Wall clock time and date at job start Wed Apr 1 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99557 * 2 1 4 4 O 1.42905 * 109.46522 * 135.00470 * 3 2 1 5 5 C 1.35715 * 116.99481 * 180.02562 * 4 3 2 6 6 C 1.38992 * 119.91610 * 359.72677 * 5 4 3 7 7 C 1.37697 * 120.09070 * 179.72466 * 6 5 4 8 8 C 1.39738 * 119.90891 * 0.56690 * 7 6 5 9 9 C 1.47596 * 120.08674 * 179.68172 * 8 7 6 10 10 O 1.21585 * 119.99872 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00534 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00573 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.49773 * 325.07107 * 12 11 9 14 14 C 1.53046 * 109.49090 * 85.16184 * 12 11 9 15 15 C 1.53041 * 109.53556 * 181.31746 * 14 12 11 16 16 C 1.53193 * 109.31147 * 298.63546 * 15 14 12 17 17 N 1.46935 * 108.77617 * 54.63641 * 16 15 14 18 18 C 1.36933 * 120.62865 * 126.41148 * 17 16 15 19 19 H 1.08003 * 119.99586 * 208.99125 * 18 17 16 20 20 C 1.38810 * 120.00572 * 28.99441 * 18 17 16 21 21 N 1.31622 * 119.99657 * 15.03514 * 20 18 17 22 22 Si 1.86802 * 120.00316 * 195.04061 * 20 18 17 23 23 H 1.48498 * 109.47085 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47328 * 120.00025 * 22 20 18 25 25 H 1.48504 * 109.46665 * 239.99881 * 22 20 18 26 26 C 1.46922 * 118.73552 * 306.38954 * 17 16 15 27 27 H 1.08997 * 109.58888 * 293.82199 * 26 17 16 28 28 C 1.52997 * 109.58620 * 173.39719 * 26 17 16 29 29 C 1.39732 * 119.82342 * 359.70899 * 8 7 6 30 30 C 1.37702 * 119.91088 * 359.97438 * 29 8 7 31 31 H 1.08006 * 119.99702 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00094 * 359.72151 * 1 2 3 33 33 H 1.08003 * 120.00185 * 180.02562 * 2 1 3 34 34 H 1.08993 * 109.47223 * 255.00155 * 3 2 1 35 35 H 1.08994 * 109.47223 * 15.01009 * 3 2 1 36 36 H 1.08004 * 119.95192 * 0.02562 * 6 5 4 37 37 H 1.07998 * 120.04692 * 180.27803 * 7 6 5 38 38 H 0.97002 * 119.99459 * 359.97438 * 11 9 8 39 39 H 1.08995 * 109.46132 * 301.33887 * 14 12 11 40 40 H 1.09003 * 109.45923 * 61.29995 * 14 12 11 41 41 H 1.08999 * 109.50169 * 178.68863 * 15 14 12 42 42 H 1.09001 * 109.52312 * 58.60038 * 15 14 12 43 43 H 1.08991 * 109.59347 * 294.84542 * 16 15 14 44 44 H 1.09008 * 109.58964 * 174.41860 * 16 15 14 45 45 H 0.97006 * 119.99872 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.47101 * 300.71379 * 28 26 17 47 47 H 1.09000 * 109.47321 * 60.70950 * 28 26 17 48 48 H 1.08999 * 109.47470 * 180.71315 * 28 26 17 49 49 H 1.07999 * 120.04092 * 179.97438 * 29 8 7 50 50 H 1.07999 * 119.95397 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9079 2.3438 1.0788 6 6 3.6578 3.4640 0.2949 7 6 4.4446 4.5866 0.4239 8 6 5.5032 4.5945 1.3361 9 6 6.3534 5.7932 1.4726 10 8 7.2743 5.7981 2.2664 11 7 6.1091 6.8824 0.7173 12 6 6.9526 8.0724 0.8532 13 1 7.2584 8.1847 1.8933 14 6 8.1927 7.9229 -0.0312 15 6 9.0908 9.1509 0.1350 16 6 8.3267 10.4015 -0.3111 17 7 7.0620 10.4736 0.4335 18 6 6.7263 11.6034 1.1306 19 1 6.1014 11.5305 2.0085 20 6 7.1890 12.8424 0.7091 21 7 7.6913 12.9808 -0.4996 22 14 7.0991 14.3131 1.8573 23 1 6.4969 13.8964 3.1492 24 1 8.4671 14.8397 2.0953 25 1 6.2614 15.3725 1.2399 26 6 6.1643 9.3107 0.4152 27 1 5.7802 9.1614 -0.5938 28 6 5.0008 9.5458 1.3805 29 6 5.7549 3.4643 2.1182 30 6 4.9594 2.3479 1.9878 31 1 -0.5400 -0.9354 -0.0004 32 1 -0.5400 0.9352 0.0045 33 1 1.8501 -0.9353 -0.0004 34 1 2.4754 1.4869 -0.9926 35 1 1.3855 2.1161 0.2661 36 1 2.8421 3.4556 -0.4130 37 1 4.2468 5.4582 -0.1824 38 1 5.3746 6.8783 0.0837 39 1 8.7424 7.0287 0.2623 40 1 7.8868 7.8352 -1.0738 41 1 9.9849 9.0334 -0.4773 42 1 9.3774 9.2537 1.1816 43 1 8.1189 10.3413 -1.3793 44 1 8.9245 11.2889 -0.1025 45 1 8.0150 13.8465 -0.7941 46 1 5.3894 9.7009 2.3871 47 1 4.4412 10.4272 1.0673 48 1 4.3428 8.6768 1.3750 49 1 6.5724 3.4664 2.8240 50 1 5.1531 1.4741 2.5923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993503232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:34 Heat of formation + Delta-G solvation = -6.703190 kcal Electronic energy + Delta-G solvation = -29661.861764 eV Core-core repulsion = 25655.461701 eV Total energy + Delta-G solvation = -4006.400063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.68923 -39.68535 -38.00032 -37.08892 -34.57809 -34.34541 -32.62576 -31.82419 -31.26344 -30.50495 -28.97882 -27.16839 -26.15832 -25.01695 -23.71872 -22.99063 -21.83288 -20.70151 -20.43165 -20.21656 -19.44838 -18.66102 -17.49692 -16.86585 -16.46104 -16.22790 -15.59570 -15.18071 -15.02580 -14.83788 -14.56245 -14.31521 -13.88029 -13.78215 -13.65580 -13.61239 -13.33815 -13.26651 -12.91210 -12.69424 -12.59678 -12.48257 -11.71856 -11.68836 -11.54406 -11.49805 -11.15165 -11.10740 -10.92163 -10.75672 -10.54941 -10.28348 -10.12170 -10.06410 -10.01841 -9.91101 -9.60700 -9.35680 -9.35125 -8.72799 -8.49804 -8.41485 -6.67746 -5.79474 -3.23812 0.74201 1.05826 1.51201 2.87641 2.88914 3.36421 3.38035 3.45562 3.47871 3.76652 4.23568 4.42593 4.45516 4.48796 4.57352 4.71811 4.79223 4.86941 5.00038 5.12503 5.27700 5.29640 5.35507 5.40332 5.52606 5.60836 5.67616 5.80704 5.84850 5.94526 5.97381 5.97978 6.03904 6.09630 6.16484 6.21958 6.34998 6.38604 6.41647 6.54774 6.64911 6.73320 6.76488 6.87297 6.98193 6.98847 7.07904 7.41344 7.68305 7.77046 7.81900 8.41690 8.47316 9.20112 9.82753 10.38856 11.29036 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002031 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.854610 B =13784.568681 C =14362.803673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.158 4.158 3 C 0.084 3.916 4 O -0.309 6.309 5 C 0.150 3.850 6 C -0.218 4.218 7 C -0.044 4.044 8 C -0.167 4.167 9 C 0.558 3.442 10 O -0.542 6.542 11 N -0.714 5.714 12 C 0.131 3.869 13 H 0.087 0.913 14 C -0.117 4.117 15 C -0.140 4.140 16 C 0.169 3.831 17 N -0.582 5.582 18 C -0.250 4.250 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.167 3.833 27 H 0.027 0.973 28 C -0.137 4.137 29 C -0.021 4.021 30 C -0.160 4.160 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.394 0.606 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.090 0.910 45 H 0.253 0.747 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.144 0.856 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.340 -23.807 -1.203 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.010 3.990 4 O -0.222 6.222 5 C 0.104 3.896 6 C -0.236 4.236 7 C -0.063 4.063 8 C -0.170 4.170 9 C 0.345 3.655 10 O -0.420 6.420 11 N -0.364 5.364 12 C 0.025 3.975 13 H 0.105 0.895 14 C -0.155 4.155 15 C -0.180 4.180 16 C 0.043 3.957 17 N -0.305 5.305 18 C -0.380 4.380 19 H 0.089 0.911 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.060 3.940 27 H 0.044 0.956 28 C -0.194 4.194 29 C -0.040 4.040 30 C -0.179 4.179 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.228 0.772 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.161 0.839 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.622 -23.776 -0.612 26.048 hybrid contribution -0.492 0.896 -0.127 1.030 sum -11.114 -22.880 -0.738 25.447 Atomic orbital electron populations 1.23919 0.95424 1.02720 0.98568 1.22658 0.95670 0.97723 1.01541 1.21894 0.87821 0.97062 0.92253 1.86057 1.42023 1.35693 1.58476 1.19238 0.90570 0.85678 0.94138 1.21152 1.04172 0.94194 1.04119 1.21135 0.92465 0.97391 0.95293 1.19999 0.99278 0.96035 1.01694 1.18107 0.83935 0.82780 0.80721 1.90770 1.31438 1.82745 1.37095 1.46064 1.34365 1.14564 1.41431 1.21811 0.90752 0.83779 1.01120 0.89480 1.21763 0.96375 0.98400 0.99002 1.22186 0.97761 0.96800 1.01259 1.20860 0.86654 0.94963 0.93182 1.44044 1.16592 1.11201 1.58676 1.19222 1.30078 0.83889 1.04771 0.91114 1.25075 1.01453 0.97422 0.95619 1.70033 1.45445 1.23328 1.15910 0.86230 0.77383 0.82791 0.80420 1.20229 1.21568 1.21782 1.20560 0.90219 0.87165 0.96097 0.95554 1.21822 0.97378 1.00243 0.99988 1.21109 0.96986 0.90167 0.95707 1.20401 0.96010 1.00228 1.01252 0.87348 0.88123 0.86182 0.90711 0.91151 0.84966 0.85134 0.77170 0.93139 0.92810 0.93014 0.92495 0.96329 0.89220 0.93716 0.92594 0.91778 0.94336 0.83858 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 14.31 29.01 0.42 -0.33 16 2 C -0.16 -0.88 9.89 -36.02 -0.36 -1.24 16 3 C 0.08 0.53 5.15 36.01 0.19 0.72 16 4 O -0.31 -2.83 10.11 -18.85 -0.19 -3.02 16 5 C 0.15 1.47 6.70 -39.02 -0.26 1.21 16 6 C -0.22 -1.94 9.01 -39.50 -0.36 -2.29 16 7 C -0.04 -0.44 9.53 -39.22 -0.37 -0.81 16 8 C -0.17 -2.08 5.87 -104.96 -0.62 -2.70 16 9 C 0.56 8.71 7.73 -12.44 -0.10 8.61 16 10 O -0.54 -10.46 16.00 5.29 0.08 -10.37 16 11 N -0.71 -10.58 4.52 -54.71 -0.25 -10.82 16 12 C 0.13 2.38 2.00 -67.81 -0.14 2.25 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 C -0.12 -2.12 5.46 -26.69 -0.15 -2.27 16 15 C -0.14 -2.78 6.08 -26.61 -0.16 -2.94 16 16 C 0.17 3.98 5.29 -3.71 -0.02 3.96 16 17 N -0.58 -14.09 2.99 -164.78 -0.49 -14.58 16 18 C -0.25 -6.62 8.61 -15.06 -0.13 -6.75 16 19 H 0.07 1.84 6.20 -52.48 -0.33 1.52 16 20 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 21 N -0.90 -25.69 11.14 55.49 0.62 -25.07 16 22 Si 0.90 21.50 29.58 -169.99 -5.03 16.48 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.17 3.34 3.03 -67.61 -0.21 3.14 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 C -0.14 -2.52 7.84 37.16 0.29 -2.23 16 29 C -0.02 -0.24 9.58 -39.22 -0.38 -0.62 16 30 C -0.16 -1.62 9.97 -39.50 -0.39 -2.01 16 31 H 0.11 0.35 8.06 -52.48 -0.42 -0.08 16 32 H 0.10 0.37 7.90 -52.49 -0.41 -0.04 16 33 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 34 H 0.07 0.40 7.64 -51.93 -0.40 0.00 16 35 H 0.07 0.38 7.38 -51.93 -0.38 0.00 16 36 H 0.13 0.85 6.28 -52.48 -0.33 0.52 16 37 H 0.13 1.04 6.39 -52.49 -0.34 0.71 16 38 H 0.39 4.74 6.63 -40.82 -0.27 4.47 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.09 2.37 6.06 -51.92 -0.31 2.06 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.05 1.09 7.40 -51.92 -0.38 0.71 16 47 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 48 H 0.04 0.58 7.78 -51.93 -0.40 0.18 16 49 H 0.14 1.65 7.64 -52.49 -0.40 1.25 16 50 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 400.54 15.07 6.04 6.04 Total: -1.00 -31.62 400.54 -9.73 -41.35 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.69 Total: 4.33 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.82 Total: -4.32 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.12 Total: -50.48 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.11 Total: -13.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.62 -9.73 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993503232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.652 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds