Wall clock time and date at job start Wed Apr 1 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99557 * 2 1 4 4 O 1.42905 * 109.46522 * 135.00470 * 3 2 1 5 5 C 1.35715 * 116.99481 * 180.02562 * 4 3 2 6 6 C 1.38992 * 119.91610 * 359.72677 * 5 4 3 7 7 C 1.37697 * 120.09070 * 179.72466 * 6 5 4 8 8 C 1.39738 * 119.90891 * 0.56690 * 7 6 5 9 9 C 1.47596 * 120.08674 * 179.68172 * 8 7 6 10 10 O 1.21585 * 119.99872 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00534 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00573 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.49773 * 325.07107 * 12 11 9 14 14 C 1.53046 * 109.49090 * 85.16184 * 12 11 9 15 15 C 1.53041 * 109.53556 * 181.31746 * 14 12 11 16 16 C 1.53193 * 109.31147 * 298.63546 * 15 14 12 17 17 N 1.46935 * 108.77617 * 54.63641 * 16 15 14 18 18 C 1.36933 * 120.62865 * 126.41148 * 17 16 15 19 19 H 1.08003 * 119.99586 * 208.99125 * 18 17 16 20 20 C 1.38810 * 120.00572 * 28.99441 * 18 17 16 21 21 N 1.31622 * 119.99657 * 15.03514 * 20 18 17 22 22 Si 1.86802 * 120.00316 * 195.04061 * 20 18 17 23 23 H 1.48498 * 109.47085 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47328 * 120.00025 * 22 20 18 25 25 H 1.48504 * 109.46665 * 239.99881 * 22 20 18 26 26 C 1.46922 * 118.73552 * 306.38954 * 17 16 15 27 27 H 1.08997 * 109.58888 * 293.82199 * 26 17 16 28 28 C 1.52997 * 109.58620 * 173.39719 * 26 17 16 29 29 C 1.39732 * 119.82342 * 359.70899 * 8 7 6 30 30 C 1.37702 * 119.91088 * 359.97438 * 29 8 7 31 31 H 1.08006 * 119.99702 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.00094 * 359.72151 * 1 2 3 33 33 H 1.08003 * 120.00185 * 180.02562 * 2 1 3 34 34 H 1.08993 * 109.47223 * 255.00155 * 3 2 1 35 35 H 1.08994 * 109.47223 * 15.01009 * 3 2 1 36 36 H 1.08004 * 119.95192 * 0.02562 * 6 5 4 37 37 H 1.07998 * 120.04692 * 180.27803 * 7 6 5 38 38 H 0.97002 * 119.99459 * 359.97438 * 11 9 8 39 39 H 1.08995 * 109.46132 * 301.33887 * 14 12 11 40 40 H 1.09003 * 109.45923 * 61.29995 * 14 12 11 41 41 H 1.08999 * 109.50169 * 178.68863 * 15 14 12 42 42 H 1.09001 * 109.52312 * 58.60038 * 15 14 12 43 43 H 1.08991 * 109.59347 * 294.84542 * 16 15 14 44 44 H 1.09008 * 109.58964 * 174.41860 * 16 15 14 45 45 H 0.97006 * 119.99872 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.47101 * 300.71379 * 28 26 17 47 47 H 1.09000 * 109.47321 * 60.70950 * 28 26 17 48 48 H 1.08999 * 109.47470 * 180.71315 * 28 26 17 49 49 H 1.07999 * 120.04092 * 179.97438 * 29 8 7 50 50 H 1.07999 * 119.95397 * 180.02562 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9079 2.3438 1.0788 6 6 3.6578 3.4640 0.2949 7 6 4.4446 4.5866 0.4239 8 6 5.5032 4.5945 1.3361 9 6 6.3534 5.7932 1.4726 10 8 7.2743 5.7981 2.2664 11 7 6.1091 6.8824 0.7173 12 6 6.9526 8.0724 0.8532 13 1 7.2584 8.1847 1.8933 14 6 8.1927 7.9229 -0.0312 15 6 9.0908 9.1509 0.1350 16 6 8.3267 10.4015 -0.3111 17 7 7.0620 10.4736 0.4335 18 6 6.7263 11.6034 1.1306 19 1 6.1014 11.5305 2.0085 20 6 7.1890 12.8424 0.7091 21 7 7.6913 12.9808 -0.4996 22 14 7.0991 14.3131 1.8573 23 1 6.4969 13.8964 3.1492 24 1 8.4671 14.8397 2.0953 25 1 6.2614 15.3725 1.2399 26 6 6.1643 9.3107 0.4152 27 1 5.7802 9.1614 -0.5938 28 6 5.0008 9.5458 1.3805 29 6 5.7549 3.4643 2.1182 30 6 4.9594 2.3479 1.9878 31 1 -0.5400 -0.9354 -0.0004 32 1 -0.5400 0.9352 0.0045 33 1 1.8501 -0.9353 -0.0004 34 1 2.4754 1.4869 -0.9926 35 1 1.3855 2.1161 0.2661 36 1 2.8421 3.4556 -0.4130 37 1 4.2468 5.4582 -0.1824 38 1 5.3746 6.8783 0.0837 39 1 8.7424 7.0287 0.2623 40 1 7.8868 7.8352 -1.0738 41 1 9.9849 9.0334 -0.4773 42 1 9.3774 9.2537 1.1816 43 1 8.1189 10.3413 -1.3793 44 1 8.9245 11.2889 -0.1025 45 1 8.0150 13.8465 -0.7941 46 1 5.3894 9.7009 2.3871 47 1 4.4412 10.4272 1.0673 48 1 4.3428 8.6768 1.3750 49 1 6.5724 3.4664 2.8240 50 1 5.1531 1.4741 2.5923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993503232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:33 Heat of formation + Delta-G solvation = -24.543988 kcal Electronic energy + Delta-G solvation = -29662.635399 eV Core-core repulsion = 25655.461701 eV Total energy + Delta-G solvation = -4007.173698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57714 -40.78044 -39.36041 -38.11319 -35.93274 -35.00603 -34.28884 -33.45457 -32.19697 -31.59078 -30.41995 -27.99176 -27.51154 -26.84573 -24.81437 -23.89899 -23.15642 -22.32554 -21.44375 -21.08020 -20.80286 -19.42260 -18.62948 -18.22182 -17.59078 -17.16005 -16.91719 -16.46391 -16.08875 -16.02155 -15.62532 -15.56128 -15.38819 -15.20067 -14.84212 -14.56896 -14.47912 -14.27578 -14.24368 -13.93645 -13.49809 -13.34173 -13.32927 -13.22442 -12.83227 -12.71154 -12.50750 -12.36060 -12.18211 -12.15881 -11.99127 -11.82466 -11.76868 -11.75027 -11.61925 -11.19633 -10.92513 -10.52612 -10.43427 -10.11482 -10.04775 -9.28140 -8.64642 -7.84647 -5.30419 -0.12683 0.30697 1.13567 1.46010 1.49239 1.58252 1.85675 2.13208 2.31679 2.54551 2.84048 3.30919 3.60479 3.67211 3.75887 3.83214 3.93224 3.95896 4.05762 4.10380 4.17215 4.21964 4.31472 4.37171 4.39567 4.52656 4.54923 4.59348 4.62763 4.77468 4.89408 4.92826 4.94092 4.97847 5.04275 5.08866 5.14144 5.20341 5.22966 5.29035 5.37079 5.45631 5.49601 5.57518 5.62057 5.63669 5.71466 5.71714 5.78323 6.32937 6.42837 6.59992 7.17205 7.26594 7.87658 8.38905 9.22274 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002031 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.854610 B =13784.568681 C =14362.803673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.177 4.177 3 C 0.077 3.923 4 O -0.320 6.320 5 C 0.152 3.848 6 C -0.212 4.212 7 C -0.037 4.037 8 C -0.188 4.188 9 C 0.559 3.441 10 O -0.586 6.586 11 N -0.702 5.702 12 C 0.147 3.853 13 H 0.057 0.943 14 C -0.109 4.109 15 C -0.130 4.130 16 C 0.175 3.825 17 N -0.600 5.600 18 C -0.251 4.251 19 H 0.072 0.928 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.960 3.040 23 H -0.269 1.269 24 H -0.294 1.294 25 H -0.292 1.292 26 C 0.165 3.835 27 H 0.037 0.963 28 C -0.128 4.128 29 C -0.029 4.029 30 C -0.166 4.166 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.411 0.589 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.005 0.995 44 H 0.056 0.944 45 H 0.248 0.752 46 H 0.039 0.961 47 H 0.050 0.950 48 H 0.075 0.925 49 H 0.134 0.866 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.690 -25.710 -1.834 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C 0.003 3.997 4 O -0.233 6.233 5 C 0.106 3.894 6 C -0.231 4.231 7 C -0.055 4.055 8 C -0.191 4.191 9 C 0.348 3.652 10 O -0.468 6.468 11 N -0.354 5.354 12 C 0.040 3.960 13 H 0.075 0.925 14 C -0.148 4.148 15 C -0.170 4.170 16 C 0.050 3.950 17 N -0.324 5.324 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.058 3.942 27 H 0.054 0.946 28 C -0.186 4.186 29 C -0.048 4.048 30 C -0.184 4.184 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.248 0.752 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.152 0.848 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.019 -25.717 -1.253 28.852 hybrid contribution 0.122 1.324 0.053 1.331 sum -12.897 -24.393 -1.201 27.619 Atomic orbital electron populations 1.24128 0.95118 1.03730 0.96717 1.22690 0.96129 0.97480 1.03252 1.22151 0.87378 0.97920 0.92233 1.86058 1.42547 1.35461 1.59276 1.19386 0.90205 0.86174 0.93662 1.21444 1.04430 0.93184 1.04023 1.21341 0.91287 0.98539 0.94375 1.19787 1.00469 0.94917 1.03950 1.18572 0.83561 0.83416 0.79637 1.90747 1.33528 1.83553 1.38967 1.45801 1.34391 1.13348 1.41830 1.21323 0.91018 0.84411 0.99218 0.92500 1.21686 0.96002 0.97362 0.99741 1.22028 0.98453 0.95869 1.00612 1.20651 0.86689 0.95242 0.92423 1.44271 1.17671 1.11901 1.58523 1.19483 1.29091 0.84747 1.04772 0.91015 1.25746 1.02071 0.99801 0.96866 1.70167 1.46942 1.23471 1.17376 0.85305 0.76857 0.79853 0.79038 1.19335 1.22066 1.21878 1.20722 0.90254 0.86244 0.96984 0.94584 1.21736 0.97095 1.01332 0.98404 1.21092 0.97261 0.90687 0.95800 1.20509 0.96067 1.00115 1.01723 0.86270 0.87242 0.86413 0.89511 0.89922 0.82009 0.82924 0.75176 0.92817 0.91413 0.90957 0.93830 0.97655 0.92581 0.94250 0.94223 0.93065 0.90659 0.84830 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 14.31 67.78 0.97 -0.03 16 2 C -0.18 -1.58 9.89 25.65 0.25 -1.33 16 3 C 0.08 0.75 5.15 71.24 0.37 1.12 16 4 O -0.32 -5.08 10.11 -90.36 -0.91 -5.99 16 5 C 0.15 2.60 6.70 22.63 0.15 2.75 16 6 C -0.21 -3.03 9.01 22.32 0.20 -2.83 16 7 C -0.04 -0.62 9.53 22.50 0.21 -0.40 16 8 C -0.19 -4.42 5.87 -20.08 -0.12 -4.54 16 9 C 0.56 16.98 7.73 86.71 0.67 17.65 16 10 O -0.59 -22.89 16.00 -3.98 -0.06 -22.95 16 11 N -0.70 -19.58 4.52 -445.28 -2.01 -21.59 16 12 C 0.15 5.24 2.00 45.07 0.09 5.33 16 13 H 0.06 2.42 7.58 -2.39 -0.02 2.40 16 14 C -0.11 -3.86 5.46 30.62 0.17 -3.69 16 15 C -0.13 -5.16 6.08 30.67 0.19 -4.97 16 16 C 0.18 8.44 5.29 86.36 0.46 8.90 16 17 N -0.60 -29.31 2.99 -675.24 -2.02 -31.33 16 18 C -0.25 -13.42 8.61 84.03 0.72 -12.70 16 19 H 0.07 3.76 6.20 -2.91 -0.02 3.74 16 20 C -0.05 -2.74 4.96 84.86 0.42 -2.32 16 21 N -0.93 -54.39 11.14 21.65 0.24 -54.15 16 22 Si 0.96 44.91 29.58 68.60 2.03 46.93 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 C 0.16 6.43 3.03 44.97 0.14 6.57 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 C -0.13 -4.57 7.84 71.98 0.56 -4.01 16 29 C -0.03 -0.66 9.58 22.50 0.22 -0.45 16 30 C -0.17 -3.11 9.97 22.32 0.22 -2.89 16 31 H 0.12 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.11 0.48 7.90 -2.91 -0.02 0.45 16 33 H 0.12 1.06 8.06 -2.91 -0.02 1.03 16 34 H 0.09 0.63 7.64 -2.39 -0.02 0.61 16 35 H 0.08 0.60 7.38 -2.39 -0.02 0.58 16 36 H 0.16 1.32 6.28 -2.91 -0.02 1.30 16 37 H 0.15 1.80 6.39 -2.91 -0.02 1.78 16 38 H 0.41 8.62 6.63 -92.71 -0.61 8.01 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.06 3.07 6.06 -2.38 -0.01 3.06 16 45 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 46 H 0.04 1.52 7.40 -2.38 -0.02 1.51 16 47 H 0.05 1.95 7.66 -2.39 -0.02 1.93 16 48 H 0.07 2.09 7.78 -2.39 -0.02 2.07 16 49 H 0.13 3.18 7.64 -2.91 -0.02 3.16 16 50 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -70.08 400.54 3.48 -66.61 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.33 Total: 20.31 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.89 Total: 2.16 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -3.79 Total: -107.07 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.98 Total: -28.95 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.08 3.48 -66.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993503232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.062 kcal (2) G-P(sol) polarization free energy of solvation -70.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds