Wall clock time and date at job start Wed Apr 1 2020 02:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99427 * 2 1 4 4 O 1.42900 * 109.46632 * 134.99828 * 3 2 1 5 5 C 1.35715 * 116.99646 * 179.97438 * 4 3 2 6 6 C 1.39000 * 119.90993 * 180.02562 * 5 4 3 7 7 C 1.37698 * 120.08809 * 179.97438 * 6 5 4 8 8 C 1.39735 * 119.91519 * 359.97438 * 7 6 5 9 9 C 1.47599 * 120.09413 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99664 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00236 * 179.72287 * 9 8 7 12 12 C 1.46499 * 119.99965 * 180.27804 * 11 9 8 13 13 H 1.08992 * 109.49842 * 35.06190 * 12 11 9 14 14 C 1.53045 * 109.49430 * 274.99656 * 12 11 9 15 15 C 1.53038 * 109.54048 * 301.41744 * 14 12 11 16 16 C 1.53195 * 109.31044 * 298.63231 * 15 14 12 17 17 N 1.46929 * 108.77512 * 54.63795 * 16 15 14 18 18 C 1.36934 * 120.63041 * 126.38664 * 17 16 15 19 19 H 1.08003 * 119.99831 * 209.50548 * 18 17 16 20 20 C 1.38813 * 120.00032 * 29.51166 * 18 17 16 21 21 N 1.31615 * 119.99845 * 15.62312 * 20 18 17 22 22 Si 1.86801 * 119.99943 * 195.62607 * 20 18 17 23 23 H 1.48504 * 109.46842 * 94.72009 * 22 20 18 24 24 H 1.48497 * 109.47099 * 214.71856 * 22 20 18 25 25 H 1.48494 * 109.47312 * 334.72069 * 22 20 18 26 26 C 1.46923 * 118.73780 * 306.39144 * 17 16 15 27 27 H 1.09000 * 109.58787 * 293.82347 * 26 17 16 28 28 C 1.53001 * 109.59030 * 173.39749 * 26 17 16 29 29 C 1.39739 * 119.82134 * 0.27083 * 8 7 6 30 30 C 1.37706 * 119.90700 * 359.47357 * 29 8 7 31 31 H 1.08001 * 120.00704 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.99967 * 179.97438 * 1 2 3 33 33 H 1.07991 * 120.00161 * 179.97438 * 2 1 3 34 34 H 1.08999 * 109.47258 * 14.99927 * 3 2 1 35 35 H 1.08997 * 109.47399 * 254.99578 * 3 2 1 36 36 H 1.08002 * 119.95599 * 359.97438 * 6 5 4 37 37 H 1.08007 * 120.04774 * 179.97438 * 7 6 5 38 38 H 0.96998 * 119.99512 * 0.27605 * 11 9 8 39 39 H 1.09004 * 109.45450 * 61.43852 * 14 12 11 40 40 H 1.08998 * 109.45526 * 181.40203 * 14 12 11 41 41 H 1.08994 * 109.49995 * 58.58540 * 15 14 12 42 42 H 1.09004 * 109.49508 * 178.68595 * 15 14 12 43 43 H 1.08995 * 109.58633 * 174.42133 * 16 15 14 44 44 H 1.09002 * 109.59064 * 294.85211 * 16 15 14 45 45 H 0.97002 * 119.99968 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.46779 * 300.70787 * 28 26 17 47 47 H 1.08998 * 109.47018 * 60.70646 * 28 26 17 48 48 H 1.08998 * 109.47756 * 180.71089 * 28 26 17 49 49 H 1.07995 * 120.04464 * 179.70394 * 29 8 7 50 50 H 1.08000 * 119.95524 * 180.25166 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1265 1.2414 0.9527 5 6 3.9084 2.3436 1.0781 6 6 4.9604 2.3474 1.9866 7 6 5.7563 3.4635 2.1164 8 6 5.5056 4.5932 1.3330 9 6 6.3559 5.7919 1.4694 10 8 7.2758 5.7975 2.2646 11 7 6.1160 6.8784 0.7089 12 6 6.9638 8.0660 0.8399 13 1 7.9890 7.7599 1.0475 14 6 6.4484 8.9373 1.9877 15 6 4.9976 9.3397 1.7133 16 6 4.9348 10.1577 0.4196 17 7 5.5608 9.3830 -0.6606 18 6 4.8871 9.1440 -1.8286 19 1 5.0895 8.2469 -2.3948 20 6 3.9441 10.0548 -2.2848 21 7 3.9089 11.2717 -1.7847 22 14 2.7252 9.5533 -3.6085 23 1 1.4639 9.0956 -2.9720 24 1 2.4424 10.7164 -4.4873 25 1 3.3001 8.4493 -4.4182 26 6 6.9232 8.8695 -0.4637 27 1 7.6224 9.7033 -0.4008 28 6 7.3045 7.9639 -1.6365 29 6 4.4439 4.5872 0.4246 30 6 3.6558 3.4651 0.2969 31 1 -0.5401 0.9352 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9352 0.0004 34 1 1.3853 2.1161 0.2660 35 1 2.4754 1.4869 -0.9926 36 1 5.1538 1.4738 2.5914 37 1 6.5733 3.4659 2.8228 38 1 5.3820 6.8740 0.0748 39 1 6.4993 8.3760 2.9208 40 1 7.0645 9.8328 2.0687 41 1 4.3854 8.4442 1.6076 42 1 4.6238 9.9408 2.5423 43 1 3.8946 10.3625 0.1668 44 1 5.4719 11.0966 0.5544 45 1 3.2497 11.9081 -2.1032 46 1 6.5994 7.1350 -1.6997 47 1 7.2751 8.5374 -2.5629 48 1 8.3107 7.5739 -1.4823 49 1 4.2439 5.4599 -0.1792 50 1 2.8375 3.4582 -0.4079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993503237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:37 Heat of formation + Delta-G solvation = -20.815178 kcal Electronic energy + Delta-G solvation = -30610.521461 eV Core-core repulsion = 26603.509457 eV Total energy + Delta-G solvation = -4007.012004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59385 -40.83150 -39.32271 -38.07630 -35.62323 -35.02227 -34.07004 -33.44917 -32.16837 -31.61073 -30.51862 -27.98751 -27.54187 -26.82069 -24.74501 -23.89742 -23.31547 -22.37601 -21.60402 -20.86124 -20.27739 -19.44242 -18.63689 -18.26028 -17.46423 -17.09043 -16.91042 -16.36997 -16.17790 -16.03990 -15.70507 -15.49188 -15.28186 -15.09835 -14.75338 -14.60632 -14.41273 -14.28574 -14.19307 -13.95292 -13.54104 -13.48369 -13.33422 -12.94983 -12.87708 -12.70124 -12.45552 -12.31255 -12.19330 -12.17627 -12.15964 -11.89993 -11.78753 -11.66611 -11.36301 -11.03435 -10.91672 -10.48598 -10.45459 -10.12368 -9.95227 -9.27796 -8.59899 -7.80177 -5.26992 -0.12005 0.29595 1.11674 1.50188 1.52568 1.60042 1.88520 2.27379 2.33416 2.55055 2.84807 3.36046 3.59846 3.66400 3.77310 3.82721 3.93692 4.04271 4.07653 4.08580 4.16698 4.21837 4.29933 4.38439 4.40363 4.53141 4.57251 4.59382 4.67256 4.77754 4.92288 4.95900 4.96355 5.00140 5.04258 5.09705 5.13947 5.21712 5.23699 5.33819 5.37656 5.46228 5.55379 5.57043 5.61013 5.66193 5.70686 5.76041 5.81329 6.30386 6.45623 6.68637 7.20693 7.29994 7.90716 8.44746 9.26547 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009324 B = 0.003382 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.414652 B = 8276.441699 C =10474.134235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.076 3.924 4 O -0.316 6.316 5 C 0.153 3.847 6 C -0.162 4.162 7 C -0.025 4.025 8 C -0.188 4.188 9 C 0.557 3.443 10 O -0.585 6.585 11 N -0.693 5.693 12 C 0.142 3.858 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.180 3.820 17 N -0.595 5.595 18 C -0.247 4.247 19 H 0.081 0.919 20 C -0.048 4.048 21 N -0.936 5.936 22 Si 0.957 3.043 23 H -0.288 1.288 24 H -0.305 1.305 25 H -0.264 1.264 26 C 0.156 3.844 27 H 0.032 0.968 28 C -0.127 4.127 29 C -0.043 4.043 30 C -0.215 4.215 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.407 0.593 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.055 0.945 44 H -0.005 1.005 45 H 0.246 0.754 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.063 0.937 49 H 0.135 0.865 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -20.158 4.342 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.193 4.193 3 C 0.002 3.998 4 O -0.230 6.230 5 C 0.106 3.894 6 C -0.181 4.181 7 C -0.044 4.044 8 C -0.191 4.191 9 C 0.346 3.654 10 O -0.467 6.467 11 N -0.344 5.344 12 C 0.036 3.964 13 H 0.098 0.902 14 C -0.154 4.154 15 C -0.165 4.165 16 C 0.054 3.946 17 N -0.319 5.319 18 C -0.377 4.377 19 H 0.098 0.902 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.787 3.213 23 H -0.215 1.215 24 H -0.233 1.233 25 H -0.189 1.189 26 C 0.050 3.950 27 H 0.050 0.950 28 C -0.185 4.185 29 C -0.062 4.062 30 C -0.234 4.234 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.160 0.840 38 H 0.245 0.755 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.013 0.987 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.152 0.848 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.797 -20.187 4.897 20.960 hybrid contribution -1.065 0.797 -1.139 1.751 sum -3.861 -19.390 3.758 20.125 Atomic orbital electron populations 1.24133 0.95131 1.03712 0.96753 1.22681 0.96091 0.97344 1.03214 1.22133 0.87449 0.98018 0.92191 1.86043 1.42439 1.35348 1.59154 1.19358 0.90428 0.85882 0.93714 1.20551 0.95766 1.00298 1.01458 1.21110 0.97326 0.90300 0.95630 1.19861 1.00132 0.95577 1.03518 1.18465 0.83635 0.83264 0.80004 1.90698 1.33333 1.83998 1.38717 1.45868 1.34218 1.13382 1.40908 1.21355 0.93905 0.84837 0.96310 0.90178 1.21722 0.97016 0.99151 0.97512 1.21953 0.96259 0.99959 0.98341 1.20573 0.97625 0.90734 0.85671 1.44335 1.11138 1.62517 1.13951 1.19502 1.16369 1.01859 0.99974 0.90151 1.25776 1.03420 0.94677 1.00502 1.70184 1.36805 1.04359 1.46868 0.85392 0.79714 0.76972 0.79234 1.21483 1.23259 1.18857 1.20849 0.87196 0.94081 0.92897 0.95006 1.21697 1.00320 0.98885 0.97576 1.21273 0.92003 0.98123 0.94761 1.21380 1.04264 0.93442 1.04264 0.87556 0.85959 0.86016 0.90382 0.89836 0.82783 0.84028 0.75518 0.92703 0.91378 0.93027 0.92050 0.92618 0.98681 0.94495 0.92570 0.93279 0.91837 0.84770 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 14.31 67.78 0.97 -0.56 16 2 C -0.18 -2.14 9.89 25.65 0.25 -1.89 16 3 C 0.08 1.09 5.15 71.24 0.37 1.45 16 4 O -0.32 -6.16 10.11 -90.36 -0.91 -7.07 16 5 C 0.15 3.24 6.70 22.63 0.15 3.39 16 6 C -0.16 -3.45 9.97 22.32 0.22 -3.23 16 7 C -0.02 -0.61 9.58 22.50 0.22 -0.40 16 8 C -0.19 -5.24 5.88 -20.08 -0.12 -5.36 16 9 C 0.56 18.46 7.73 86.71 0.67 19.14 16 10 O -0.58 -22.46 16.00 -3.99 -0.06 -22.52 16 11 N -0.69 -22.76 3.42 -445.27 -1.52 -24.28 16 12 C 0.14 4.94 2.32 45.07 0.10 5.04 16 13 H 0.08 2.78 7.58 -2.39 -0.02 2.76 16 14 C -0.12 -4.00 5.58 30.62 0.17 -3.83 16 15 C -0.13 -4.70 5.93 30.67 0.18 -4.51 16 16 C 0.18 8.22 5.29 86.36 0.46 8.68 16 17 N -0.60 -26.85 2.64 -675.22 -1.79 -28.63 16 18 C -0.25 -12.02 8.59 84.03 0.72 -11.30 16 19 H 0.08 3.70 6.22 -2.91 -0.02 3.68 16 20 C -0.05 -2.51 4.94 84.86 0.42 -2.09 16 21 N -0.94 -52.85 11.21 21.65 0.24 -52.61 16 22 Si 0.96 41.94 29.58 68.60 2.03 43.97 16 23 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.31 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 C 0.16 5.99 3.20 44.98 0.14 6.14 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 C -0.13 -4.38 7.72 71.98 0.56 -3.83 16 29 C -0.04 -1.05 9.53 22.51 0.21 -0.84 16 30 C -0.22 -4.51 9.01 22.33 0.20 -4.31 16 31 H 0.11 0.89 7.90 -2.91 -0.02 0.86 16 32 H 0.12 0.79 8.06 -2.91 -0.02 0.77 16 33 H 0.12 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.08 0.99 7.37 -2.39 -0.02 0.97 16 35 H 0.08 1.04 7.65 -2.39 -0.02 1.02 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.14 3.45 7.64 -2.91 -0.02 3.43 16 38 H 0.41 13.40 5.79 -92.71 -0.54 12.86 16 39 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.94 7.53 -2.39 -0.02 1.92 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.89 6.12 -2.39 -0.01 2.88 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 46 H 0.06 1.89 6.37 -2.39 -0.02 1.87 16 47 H 0.05 1.83 7.66 -2.39 -0.02 1.81 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.13 3.26 6.39 -2.91 -0.02 3.25 16 50 H 0.15 2.49 6.28 -2.91 -0.02 2.47 16 Total: -1.00 -62.34 397.44 4.30 -58.04 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.41 Total: 31.40 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 5.90 Total: 1.70 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.06 Total: -105.52 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.98 Total: -29.59 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -62.34 4.30 -58.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993503237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.229 kcal (2) G-P(sol) polarization free energy of solvation -62.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds