Wall clock time and date at job start Wed Apr 1 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46499 * 109.35763 * 305.61149 * 4 2 1 7 7 C 1.34777 * 119.99779 * 155.15806 * 6 4 2 8 8 O 1.21549 * 120.00235 * 0.02562 * 7 6 4 9 9 C 1.47850 * 119.99674 * 180.02562 * 7 6 4 10 10 C 1.39602 * 120.22772 * 359.72915 * 9 7 6 11 11 C 1.37753 * 119.74018 * 179.80634 * 10 9 7 12 12 C 1.38798 * 120.51311 * 0.60873 * 11 10 9 13 13 C 1.38075 * 119.99918 * 359.53782 * 12 11 10 14 14 C 1.38328 * 120.02583 * 0.16725 * 13 12 11 15 15 C 1.50780 * 121.33951 * 180.35108 * 13 12 11 16 16 C 1.52963 * 109.77088 * 342.97850 * 15 13 12 17 17 O 1.43212 * 108.45858 * 49.25343 * 16 15 13 18 18 C 1.42720 * 113.12871 * 289.23595 * 17 16 15 19 19 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 20 20 C 1.53043 * 109.54140 * 61.23858 * 19 4 2 21 21 C 1.53193 * 109.30963 * 298.63474 * 20 19 4 22 22 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 23 23 C 1.36942 * 120.62997 * 353.41990 * 22 2 1 24 24 H 1.07996 * 119.99319 * 29.57864 * 23 22 2 25 25 C 1.38810 * 120.00133 * 209.57896 * 23 22 2 26 26 N 1.31624 * 120.00100 * 15.53431 * 25 23 22 27 27 Si 1.86799 * 120.00094 * 195.53167 * 25 23 22 28 28 H 1.48493 * 109.47263 * 180.02562 * 27 25 23 29 29 H 1.48502 * 109.46894 * 300.00408 * 27 25 23 30 30 H 1.48500 * 109.47199 * 59.99956 * 27 25 23 31 31 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 32 32 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 33 33 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 34 34 H 0.97006 * 120.00201 * 335.16506 * 6 4 2 35 35 H 1.07990 * 120.12625 * 0.07366 * 10 9 7 36 36 H 1.08004 * 119.73963 * 180.28915 * 11 10 9 37 37 H 1.07996 * 119.91750 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.41973 * 103.07509 * 15 13 12 39 39 H 1.09001 * 109.41760 * 222.95403 * 15 13 12 40 40 H 1.08995 * 109.63451 * 168.93743 * 16 15 13 41 41 H 1.08991 * 109.64041 * 289.34861 * 16 15 13 42 42 H 1.08997 * 109.33529 * 172.08398 * 18 17 16 43 43 H 1.08998 * 109.32853 * 291.58219 * 18 17 16 44 44 H 1.09001 * 109.46284 * 301.21051 * 19 4 2 45 45 H 1.09005 * 109.44845 * 181.25310 * 19 4 2 46 46 H 1.08996 * 109.49796 * 178.68040 * 20 19 4 47 47 H 1.09000 * 109.52406 * 58.60257 * 20 19 4 48 48 H 1.08998 * 109.58588 * 294.84653 * 21 20 19 49 49 H 1.08997 * 109.70252 * 174.49039 * 21 20 19 50 50 H 0.96997 * 120.00116 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3103 7 6 1.3202 -2.6849 -2.4974 8 8 1.7039 -2.1407 -3.5143 9 6 0.7177 -4.0335 -2.5628 10 6 0.2805 -4.6652 -1.3972 11 6 -0.2829 -5.9201 -1.4701 12 6 -0.4079 -6.5665 -2.6920 13 6 0.0256 -5.9479 -3.8478 14 6 0.5875 -4.6853 -3.7882 15 6 -0.1027 -6.6189 -5.1920 16 6 -0.3430 -8.1175 -5.0013 17 8 -1.3999 -8.2899 -4.0504 18 6 -1.0184 -7.9442 -2.7193 19 6 3.5638 -0.8460 -1.1726 20 6 3.9524 -1.6685 0.0581 21 6 3.4644 -0.9518 1.3211 22 7 2.0225 -0.6995 1.1944 23 6 1.1536 -1.1135 2.1685 24 1 0.1387 -1.3770 1.9102 25 6 1.5774 -1.1945 3.4879 26 7 2.6899 -0.5973 3.8596 27 14 0.5688 -2.1509 4.7358 28 1 1.2312 -2.0843 6.0632 29 1 -0.7903 -1.5601 4.8311 30 1 0.4633 -3.5682 4.3053 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0064 34 1 1.1377 -2.4933 -0.4987 35 1 0.3797 -4.1702 -0.4425 36 1 -0.6254 -6.4068 -0.5689 37 1 0.9264 -4.2032 -4.6932 38 1 -0.9410 -6.1837 -5.7359 39 1 0.8152 -6.4695 -5.7606 40 1 -0.6291 -8.5665 -5.9524 41 1 0.5670 -8.5903 -4.6320 42 1 -1.8979 -7.9621 -2.0757 43 1 -0.2911 -8.6686 -2.3528 44 1 4.0058 0.1477 -1.0996 45 1 3.9312 -1.3415 -2.0713 46 1 5.0363 -1.7760 0.0965 47 1 3.4910 -2.6543 -0.0021 48 1 3.9928 -0.0049 1.4310 49 1 3.6506 -1.5776 2.1938 50 1 2.9862 -0.6542 4.7815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993591690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:56 Heat of formation + Delta-G solvation = -40.872867 kcal Electronic energy + Delta-G solvation = -31128.232276 eV Core-core repulsion = 27120.350505 eV Total energy + Delta-G solvation = -4007.881771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.65364 -39.63366 -37.96935 -37.08420 -34.05038 -33.32986 -32.56703 -32.07047 -31.46568 -29.67449 -29.36857 -26.63537 -25.86714 -25.03515 -24.17675 -22.89761 -22.02082 -21.48367 -20.76230 -19.65754 -18.76257 -17.69446 -16.95411 -16.51986 -16.29814 -15.92518 -15.53090 -15.09597 -14.89526 -14.76986 -14.48015 -14.15553 -13.89425 -13.83948 -13.54955 -13.46740 -13.14118 -13.07079 -13.00372 -12.61062 -12.49863 -12.40335 -11.88586 -11.67178 -11.30930 -11.26653 -11.25339 -11.00899 -10.96016 -10.74901 -10.65653 -10.56597 -10.15924 -10.08123 -10.05137 -9.70997 -9.58520 -9.34579 -8.94316 -8.82352 -8.56747 -8.45537 -6.71859 -5.86121 -3.31836 0.76322 1.22236 2.93713 3.31027 3.37158 3.38527 3.50363 3.57030 3.84505 4.37621 4.39451 4.40657 4.57353 4.76120 4.86983 4.97860 5.03137 5.11124 5.17762 5.26918 5.28248 5.29379 5.39022 5.52276 5.54747 5.57950 5.60332 5.71959 5.76800 5.85478 5.93259 6.08727 6.18359 6.20069 6.25655 6.28068 6.34902 6.39706 6.50062 6.64004 6.64721 6.72603 6.75023 6.77333 6.90820 6.93913 7.07351 7.33703 7.61748 7.72642 7.97424 8.37341 8.56307 9.13245 9.76204 10.33873 11.21954 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.003253 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.510508 B = 8605.474946 C =10046.669915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.134 3.866 5 H 0.077 0.923 6 N -0.693 5.693 7 C 0.551 3.449 8 O -0.553 6.553 9 C -0.123 4.123 10 C -0.084 4.084 11 C -0.117 4.117 12 C -0.103 4.103 13 C -0.087 4.087 14 C -0.060 4.060 15 C -0.114 4.114 16 C 0.058 3.942 17 O -0.376 6.376 18 C 0.100 3.900 19 C -0.121 4.121 20 C -0.140 4.140 21 C 0.171 3.829 22 N -0.586 5.586 23 C -0.259 4.259 24 H 0.069 0.931 25 C 0.008 3.992 26 N -0.899 5.899 27 Si 0.899 3.101 28 H -0.291 1.291 29 H -0.283 1.283 30 H -0.284 1.284 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.052 0.948 48 H 0.018 0.982 49 H 0.085 0.915 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.275 -12.228 -13.751 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.058 0.942 4 C 0.028 3.972 5 H 0.095 0.905 6 N -0.344 5.344 7 C 0.338 3.662 8 O -0.433 6.433 9 C -0.126 4.126 10 C -0.102 4.102 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.087 4.087 14 C -0.079 4.079 15 C -0.151 4.151 16 C -0.018 4.018 17 O -0.294 6.294 18 C 0.023 3.977 19 C -0.160 4.160 20 C -0.180 4.180 21 C 0.046 3.954 22 N -0.310 5.310 23 C -0.389 4.389 24 H 0.087 0.913 25 C -0.191 4.191 26 N -0.542 5.542 27 Si 0.729 3.271 28 H -0.217 1.217 29 H -0.209 1.209 30 H -0.210 1.210 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.036 0.964 49 H 0.104 0.896 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.111 -11.851 -14.291 19.015 hybrid contribution -0.185 -0.396 1.349 1.418 sum -4.296 -12.246 -12.941 18.328 Atomic orbital electron populations 1.21788 0.95620 1.01371 1.00571 1.20641 0.93378 0.94029 0.86789 0.94234 1.21504 0.92936 0.82880 0.99908 0.90473 1.45963 1.60833 1.18784 1.08849 1.18232 0.78887 0.85091 0.83987 1.90715 1.50875 1.67082 1.34604 1.20056 1.02779 0.95457 0.94329 1.21406 0.95880 0.94918 0.98025 1.20924 1.00365 0.95168 0.97075 1.20409 0.99178 0.97290 0.93443 1.19399 0.99814 0.94849 0.94660 1.21150 0.95948 0.93176 0.97593 1.21122 1.03426 0.96133 0.94392 1.22637 0.91002 0.94788 0.93405 1.88074 1.37300 1.87050 1.16955 1.21488 1.00265 0.91128 0.84792 1.21772 0.95408 1.00500 0.98277 1.22141 0.98976 0.99499 0.97336 1.20792 0.83203 0.97190 0.94221 1.44138 1.03153 1.64864 1.18801 1.19094 0.95076 1.38477 0.86227 0.91292 1.25102 0.97757 0.99322 0.96966 1.70014 1.23869 1.43437 1.16891 0.86429 0.79686 0.80146 0.80816 1.21689 1.20875 1.21011 0.91682 0.94153 0.92907 0.75421 0.84794 0.85152 0.84699 0.89541 0.89498 0.88246 0.92508 0.87439 0.91433 0.91828 0.93095 0.93425 0.92926 0.96352 0.89635 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.72 37.16 0.29 -2.15 16 2 C 0.16 3.10 3.18 -67.83 -0.22 2.88 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.38 2.32 -68.03 -0.16 2.23 16 5 H 0.08 1.39 7.58 -51.93 -0.39 0.99 16 6 N -0.69 -11.74 3.40 -54.85 -0.19 -11.93 16 7 C 0.55 9.40 7.74 -12.33 -0.10 9.31 16 8 O -0.55 -10.81 16.01 5.32 0.09 -10.73 16 9 C -0.12 -1.80 5.87 -105.02 -0.62 -2.42 16 10 C -0.08 -1.10 9.54 -39.25 -0.37 -1.47 16 11 C -0.12 -1.32 9.65 -39.55 -0.38 -1.70 16 12 C -0.10 -1.12 5.81 -104.47 -0.61 -1.73 16 13 C -0.09 -1.00 5.77 -104.61 -0.60 -1.60 16 14 C -0.06 -0.79 9.22 -39.11 -0.36 -1.15 16 15 C -0.11 -0.99 6.00 -27.86 -0.17 -1.15 16 16 C 0.06 0.45 6.84 37.14 0.25 0.71 16 17 O -0.38 -3.76 10.80 -35.23 -0.38 -4.14 16 18 C 0.10 0.89 6.66 36.01 0.24 1.13 16 19 C -0.12 -2.14 5.58 -26.69 -0.15 -2.29 16 20 C -0.14 -2.64 5.93 -26.61 -0.16 -2.79 16 21 C 0.17 3.85 5.29 -3.71 -0.02 3.83 16 22 N -0.59 -13.20 2.65 -165.03 -0.44 -13.64 16 23 C -0.26 -6.36 8.57 -15.06 -0.13 -6.49 16 24 H 0.07 1.63 6.23 -52.49 -0.33 1.31 16 25 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 26 N -0.90 -24.73 11.23 55.49 0.62 -24.10 16 27 Si 0.90 20.38 29.58 -169.99 -5.03 15.35 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 31 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.93 6.36 -51.93 -0.33 0.60 16 34 H 0.41 6.95 5.79 -40.82 -0.24 6.72 16 35 H 0.13 1.74 6.42 -52.49 -0.34 1.40 16 36 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.14 1.77 7.64 -52.49 -0.40 1.37 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 42 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 1.00 7.53 -51.93 -0.39 0.61 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 2.16 6.14 -51.93 -0.32 1.84 16 50 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -29.50 386.94 -10.59 -40.09 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.76 Total: 8.02 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.34 Total: -4.76 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.00 Total: -49.67 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.30 Total: -14.87 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.50 -10.59 -40.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993591690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.781 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds