Wall clock time and date at job start Wed Apr 1 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 6 6 N 1.46499 * 109.35763 * 305.61149 * 4 2 1 7 7 C 1.34777 * 119.99779 * 155.15806 * 6 4 2 8 8 O 1.21549 * 120.00235 * 0.02562 * 7 6 4 9 9 C 1.47850 * 119.99674 * 180.02562 * 7 6 4 10 10 C 1.39602 * 120.22772 * 359.72915 * 9 7 6 11 11 C 1.37753 * 119.74018 * 179.80634 * 10 9 7 12 12 C 1.38798 * 120.51311 * 0.60873 * 11 10 9 13 13 C 1.38075 * 119.99918 * 359.53782 * 12 11 10 14 14 C 1.38328 * 120.02583 * 0.16725 * 13 12 11 15 15 C 1.50780 * 121.33951 * 180.35108 * 13 12 11 16 16 C 1.52963 * 109.77088 * 342.97850 * 15 13 12 17 17 O 1.43212 * 108.45858 * 49.25343 * 16 15 13 18 18 C 1.42720 * 113.12871 * 289.23595 * 17 16 15 19 19 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 20 20 C 1.53043 * 109.54140 * 61.23858 * 19 4 2 21 21 C 1.53193 * 109.30963 * 298.63474 * 20 19 4 22 22 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 23 23 C 1.36942 * 120.62997 * 353.41990 * 22 2 1 24 24 H 1.07996 * 119.99319 * 29.57864 * 23 22 2 25 25 C 1.38810 * 120.00133 * 209.57896 * 23 22 2 26 26 N 1.31624 * 120.00100 * 15.53431 * 25 23 22 27 27 Si 1.86799 * 120.00094 * 195.53167 * 25 23 22 28 28 H 1.48493 * 109.47263 * 180.02562 * 27 25 23 29 29 H 1.48502 * 109.46894 * 300.00408 * 27 25 23 30 30 H 1.48500 * 109.47199 * 59.99956 * 27 25 23 31 31 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 32 32 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 33 33 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 34 34 H 0.97006 * 120.00201 * 335.16506 * 6 4 2 35 35 H 1.07990 * 120.12625 * 0.07366 * 10 9 7 36 36 H 1.08004 * 119.73963 * 180.28915 * 11 10 9 37 37 H 1.07996 * 119.91750 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.41973 * 103.07509 * 15 13 12 39 39 H 1.09001 * 109.41760 * 222.95403 * 15 13 12 40 40 H 1.08995 * 109.63451 * 168.93743 * 16 15 13 41 41 H 1.08991 * 109.64041 * 289.34861 * 16 15 13 42 42 H 1.08997 * 109.33529 * 172.08398 * 18 17 16 43 43 H 1.08998 * 109.32853 * 291.58219 * 18 17 16 44 44 H 1.09001 * 109.46284 * 301.21051 * 19 4 2 45 45 H 1.09005 * 109.44845 * 181.25310 * 19 4 2 46 46 H 1.08996 * 109.49796 * 178.68040 * 20 19 4 47 47 H 1.09000 * 109.52406 * 58.60257 * 20 19 4 48 48 H 1.08998 * 109.58588 * 294.84653 * 21 20 19 49 49 H 1.08997 * 109.70252 * 174.49039 * 21 20 19 50 50 H 0.96997 * 120.00116 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1349 6 7 1.4438 -2.0589 -1.3103 7 6 1.3202 -2.6849 -2.4974 8 8 1.7039 -2.1407 -3.5143 9 6 0.7177 -4.0335 -2.5628 10 6 0.2805 -4.6652 -1.3972 11 6 -0.2829 -5.9201 -1.4701 12 6 -0.4079 -6.5665 -2.6920 13 6 0.0256 -5.9479 -3.8478 14 6 0.5875 -4.6853 -3.7882 15 6 -0.1027 -6.6189 -5.1920 16 6 -0.3430 -8.1175 -5.0013 17 8 -1.3999 -8.2899 -4.0504 18 6 -1.0184 -7.9442 -2.7193 19 6 3.5638 -0.8460 -1.1726 20 6 3.9524 -1.6685 0.0581 21 6 3.4644 -0.9518 1.3211 22 7 2.0225 -0.6995 1.1944 23 6 1.1536 -1.1135 2.1685 24 1 0.1387 -1.3770 1.9102 25 6 1.5774 -1.1945 3.4879 26 7 2.6899 -0.5973 3.8596 27 14 0.5688 -2.1509 4.7358 28 1 1.2312 -2.0843 6.0632 29 1 -0.7903 -1.5601 4.8311 30 1 0.4633 -3.5682 4.3053 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3634 -1.0276 -0.0064 34 1 1.1377 -2.4933 -0.4987 35 1 0.3797 -4.1702 -0.4425 36 1 -0.6254 -6.4068 -0.5689 37 1 0.9264 -4.2032 -4.6932 38 1 -0.9410 -6.1837 -5.7359 39 1 0.8152 -6.4695 -5.7606 40 1 -0.6291 -8.5665 -5.9524 41 1 0.5670 -8.5903 -4.6320 42 1 -1.8979 -7.9621 -2.0757 43 1 -0.2911 -8.6686 -2.3528 44 1 4.0058 0.1477 -1.0996 45 1 3.9312 -1.3415 -2.0713 46 1 5.0363 -1.7760 0.0965 47 1 3.4910 -2.6543 -0.0021 48 1 3.9928 -0.0049 1.4310 49 1 3.6506 -1.5776 2.1938 50 1 2.9862 -0.6542 4.7815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993591690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:55 Heat of formation + Delta-G solvation = -56.371879 kcal Electronic energy + Delta-G solvation = -31128.904364 eV Core-core repulsion = 27120.350505 eV Total energy + Delta-G solvation = -4008.553859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68321 -40.81340 -39.29063 -38.14992 -35.66844 -34.32781 -33.92307 -33.47982 -32.78758 -31.05045 -30.41373 -28.05490 -27.05091 -26.72825 -24.92854 -24.14295 -23.28339 -22.69179 -22.32353 -20.81045 -20.26816 -18.79905 -18.28472 -17.72899 -17.25615 -17.08061 -16.66216 -16.50405 -16.26409 -15.79321 -15.70745 -15.65127 -15.10429 -15.08255 -14.85478 -14.58225 -14.54177 -14.31885 -14.23079 -13.95188 -13.56176 -13.28281 -13.22513 -12.96232 -12.88907 -12.70656 -12.49190 -12.44755 -12.36089 -12.20186 -12.05642 -11.94735 -11.70038 -11.67016 -11.39203 -11.08189 -11.02098 -10.66930 -10.48422 -10.04539 -9.83636 -9.63561 -8.60903 -7.81385 -5.28398 -0.24096 0.29736 1.51770 1.52663 1.58613 1.79703 2.23044 2.54607 2.76124 2.93725 3.35016 3.55328 3.57896 3.60565 3.78887 3.82389 3.99756 4.04512 4.06113 4.17581 4.20039 4.27772 4.37160 4.40309 4.46463 4.53816 4.55236 4.64531 4.72351 4.75969 4.82680 4.85259 4.92784 4.94299 4.97021 5.01792 5.07097 5.10514 5.20279 5.26355 5.30116 5.33544 5.43498 5.44066 5.53532 5.60895 5.74201 5.79068 5.84198 6.12462 6.44457 6.61542 7.19074 7.22446 7.89334 8.43382 9.25391 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012618 B = 0.003253 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.510508 B = 8605.474946 C =10046.669915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.032 0.968 4 C 0.142 3.858 5 H 0.080 0.920 6 N -0.691 5.691 7 C 0.553 3.447 8 O -0.583 6.583 9 C -0.145 4.145 10 C -0.091 4.091 11 C -0.116 4.116 12 C -0.099 4.099 13 C -0.092 4.092 14 C -0.069 4.069 15 C -0.114 4.114 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.098 3.902 19 C -0.115 4.115 20 C -0.126 4.126 21 C 0.180 3.820 22 N -0.595 5.595 23 C -0.251 4.251 24 H 0.080 0.920 25 C -0.047 4.047 26 N -0.935 5.935 27 Si 0.958 3.042 28 H -0.304 1.304 29 H -0.278 1.278 30 H -0.273 1.273 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.065 0.935 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.050 0.950 48 H -0.005 1.005 49 H 0.056 0.944 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 -14.508 -14.974 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.050 0.950 4 C 0.036 3.964 5 H 0.098 0.902 6 N -0.341 5.341 7 C 0.341 3.659 8 O -0.465 6.465 9 C -0.148 4.148 10 C -0.110 4.110 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.092 4.092 14 C -0.088 4.088 15 C -0.151 4.151 16 C -0.020 4.020 17 O -0.310 6.310 18 C 0.022 3.978 19 C -0.154 4.154 20 C -0.165 4.165 21 C 0.054 3.946 22 N -0.319 5.319 23 C -0.381 4.381 24 H 0.097 0.903 25 C -0.242 4.242 26 N -0.581 5.581 27 Si 0.787 3.213 28 H -0.230 1.230 29 H -0.204 1.204 30 H -0.199 1.199 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.149 0.851 36 H 0.174 0.826 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.083 0.917 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.014 0.986 49 H 0.074 0.926 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.521 -14.144 -15.539 21.725 hybrid contribution 0.223 0.301 1.647 1.689 sum -5.298 -13.843 -13.891 20.314 Atomic orbital electron populations 1.21705 0.94264 1.01659 1.00917 1.20746 0.94508 0.93522 0.86178 0.95011 1.21307 0.92945 0.83368 0.98818 0.90189 1.45895 1.60816 1.18372 1.09005 1.18591 0.78186 0.85811 0.83273 1.90689 1.52312 1.68067 1.35420 1.19925 1.04675 0.94616 0.95589 1.21436 0.96449 0.95803 0.97314 1.21213 0.99406 0.94374 0.98344 1.20777 0.97966 0.98217 0.93044 1.19731 0.98913 0.94213 0.96357 1.21205 0.96569 0.94054 0.96930 1.21204 1.04190 0.96703 0.92984 1.22810 0.91044 0.94083 0.94077 1.88062 1.38382 1.87012 1.17560 1.21660 1.01296 0.89971 0.84907 1.21721 0.95432 1.00621 0.97610 1.21949 0.99765 0.98915 0.95855 1.20568 0.83370 0.95800 0.94842 1.44305 1.02984 1.65364 1.19291 1.19440 0.95515 1.36676 0.86450 0.90276 1.25783 0.98892 1.00760 0.98794 1.70176 1.25782 1.45575 1.16611 0.85480 0.78236 0.79432 0.78117 1.23036 1.20404 1.19876 0.93199 0.91880 0.92623 0.75407 0.85085 0.82604 0.85263 0.89326 0.88227 0.86132 0.91669 0.85881 0.89625 0.91259 0.92747 0.91951 0.93100 0.98648 0.92599 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 7.72 71.98 0.56 -3.90 16 2 C 0.16 6.06 3.18 44.83 0.14 6.20 16 3 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.14 4.96 2.32 44.93 0.10 5.07 16 5 H 0.08 2.80 7.58 -2.39 -0.02 2.78 16 6 N -0.69 -22.97 3.40 -445.73 -1.51 -24.48 16 7 C 0.55 18.66 7.74 86.79 0.67 19.33 16 8 O -0.58 -22.71 16.01 -3.87 -0.06 -22.78 16 9 C -0.15 -4.16 5.87 -20.12 -0.12 -4.28 16 10 C -0.09 -2.28 9.54 22.48 0.21 -2.07 16 11 C -0.12 -2.32 9.65 22.29 0.21 -2.10 16 12 C -0.10 -1.92 5.81 -19.76 -0.11 -2.04 16 13 C -0.09 -1.94 5.77 -19.86 -0.11 -2.06 16 14 C -0.07 -1.77 9.22 22.57 0.21 -1.56 16 15 C -0.11 -1.72 6.00 29.86 0.18 -1.54 16 16 C 0.06 0.70 6.84 71.97 0.49 1.20 16 17 O -0.39 -6.64 10.80 -148.98 -1.61 -8.25 16 18 C 0.10 1.42 6.66 71.24 0.47 1.89 16 19 C -0.12 -4.00 5.58 30.62 0.17 -3.83 16 20 C -0.13 -4.69 5.93 30.67 0.18 -4.51 16 21 C 0.18 8.24 5.29 86.36 0.46 8.70 16 22 N -0.60 -27.01 2.65 -676.05 -1.79 -28.80 16 23 C -0.25 -12.29 8.57 84.03 0.72 -11.57 16 24 H 0.08 3.67 6.23 -2.91 -0.02 3.65 16 25 C -0.05 -2.43 4.94 84.86 0.42 -2.01 16 26 N -0.94 -52.91 11.23 21.65 0.24 -52.66 16 27 Si 0.96 42.08 29.58 68.60 2.03 44.11 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 30 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 31 H 0.05 1.88 7.62 -2.39 -0.02 1.86 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.89 6.36 -2.39 -0.02 1.88 16 34 H 0.41 13.66 5.79 -92.70 -0.54 13.12 16 35 H 0.13 3.28 6.42 -2.92 -0.02 3.26 16 36 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.13 3.39 7.64 -2.91 -0.02 3.37 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.06 0.72 8.07 -2.39 -0.02 0.70 16 42 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 47 H 0.05 1.92 7.53 -2.39 -0.02 1.90 16 48 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 49 H 0.06 2.90 6.14 -2.39 -0.01 2.89 16 50 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -63.89 386.94 2.57 -61.32 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.41 Total: 30.63 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 4.86 Total: 0.92 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.06 Total: -105.94 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.67 Total: -31.03 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -63.89 2.57 -61.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993591690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.946 kcal (2) G-P(sol) polarization free energy of solvation -63.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds