Wall clock time and date at job start Wed Apr 1 2020 02:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.70497 * 2 1 4 4 C 1.52760 * 109.51198 * 239.87778 * 2 1 3 5 5 H 1.09000 * 109.56020 * 65.67169 * 4 2 1 6 6 N 1.46499 * 109.38409 * 305.63668 * 4 2 1 7 7 C 1.34783 * 119.99698 * 155.14298 * 6 4 2 8 8 O 1.21278 * 120.00499 * 359.97438 * 7 6 4 9 9 C 1.50706 * 119.99554 * 179.97438 * 7 6 4 10 10 C 1.50701 * 109.46756 * 179.97438 * 9 7 6 11 11 C 1.38260 * 119.98002 * 90.00085 * 10 9 7 12 12 C 1.38296 * 120.04212 * 179.97438 * 11 10 9 13 13 C 1.37969 * 119.92143 * 359.97438 * 12 11 10 14 14 C 1.38602 * 120.03544 * 0.02562 * 13 12 11 15 15 C 1.37970 * 120.04093 * 359.74128 * 14 13 12 16 16 C 1.51082 * 107.27243 * 179.97438 * 14 13 12 17 17 O 1.43944 * 105.95303 * 342.31334 * 16 14 13 18 18 C 1.43934 * 104.95235 * 28.44600 * 17 16 14 19 19 C 1.53039 * 109.38415 * 185.71022 * 4 2 1 20 20 C 1.53039 * 109.53891 * 61.24307 * 19 4 2 21 21 C 1.53200 * 109.30850 * 298.63362 * 20 19 4 22 22 N 1.46927 * 109.58114 * 120.35204 * 2 1 3 23 23 C 1.36935 * 120.63424 * 353.41687 * 22 2 1 24 24 H 1.08004 * 120.00016 * 29.32474 * 23 22 2 25 25 C 1.38813 * 120.00307 * 209.32339 * 23 22 2 26 26 N 1.31624 * 119.99795 * 24.22941 * 25 23 22 27 27 Si 1.86792 * 120.00178 * 204.22761 * 25 23 22 28 28 H 1.48500 * 109.47397 * 89.99851 * 27 25 23 29 29 H 1.48504 * 109.47424 * 329.99967 * 27 25 23 30 30 H 1.48503 * 109.47127 * 209.99987 * 27 25 23 31 31 H 1.09001 * 109.47482 * 299.65279 * 1 2 3 32 32 H 1.09005 * 109.46588 * 59.64416 * 1 2 3 33 33 H 1.08996 * 109.47397 * 179.64405 * 1 2 3 34 34 H 0.96996 * 120.00366 * 335.14253 * 6 4 2 35 35 H 1.08999 * 109.47392 * 299.99888 * 9 7 6 36 36 H 1.09000 * 109.47009 * 60.00170 * 9 7 6 37 37 H 1.08001 * 119.98057 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.04100 * 180.02562 * 12 11 10 39 39 H 1.08002 * 120.03802 * 180.28124 * 15 14 13 40 40 H 1.08999 * 110.15474 * 223.19380 * 16 14 13 41 41 H 1.08998 * 110.21388 * 101.46496 * 16 14 13 42 42 H 1.09009 * 110.15620 * 212.43512 * 18 17 16 43 43 H 1.08997 * 110.15801 * 90.67822 * 18 17 16 44 44 H 1.08995 * 109.45977 * 301.21945 * 19 4 2 45 45 H 1.09000 * 109.45751 * 181.26032 * 19 4 2 46 46 H 1.08998 * 109.49821 * 178.68732 * 20 19 4 47 47 H 1.08995 * 109.50357 * 58.58168 * 20 19 4 48 48 H 1.08998 * 109.58708 * 294.84642 * 21 20 19 49 49 H 1.08998 * 109.58301 * 174.42201 * 21 20 19 50 50 H 0.97002 * 119.99613 * 4.06243 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2454 5 1 1.7633 -0.1566 -2.1349 6 7 1.4437 -2.0590 -1.3108 7 6 1.3202 -2.6845 -2.4983 8 8 1.7024 -2.1408 -3.5128 9 6 0.7070 -4.0595 -2.5655 10 6 0.6855 -4.5305 -3.9969 11 6 1.7587 -5.2364 -4.5081 12 6 1.7400 -5.6697 -5.8214 13 6 0.6489 -5.3971 -6.6206 14 6 -0.4270 -4.6893 -6.1080 15 6 -0.4104 -4.2613 -4.7965 16 6 -1.4453 -4.5564 -7.2161 17 8 -0.7372 -4.8301 -8.4391 18 6 0.3269 -5.7222 -8.0604 19 6 3.5639 -0.8463 -1.1725 20 6 3.9522 -1.6688 0.0583 21 6 3.4643 -0.9519 1.3212 22 7 2.0224 -0.6995 1.1946 23 6 1.1535 -1.1134 2.1686 24 1 0.1372 -1.3729 1.9110 25 6 1.5787 -1.1994 3.4872 26 7 2.5946 -0.4712 3.8999 27 14 0.7092 -2.3483 4.6759 28 1 1.3597 -3.6828 4.6397 29 1 -0.7164 -2.4818 4.2822 30 1 0.7931 -1.7939 6.0510 31 1 -0.3634 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 -0.3634 -1.0276 -0.0064 34 1 1.1376 -2.4938 -0.4996 35 1 1.2977 -4.7505 -1.9641 36 1 -0.3120 -4.0222 -2.1803 37 1 2.6121 -5.4497 -3.8816 38 1 2.5782 -6.2215 -6.2206 39 1 -1.2507 -3.7138 -4.3958 40 1 -1.8500 -3.5444 -7.2348 41 1 -2.2491 -5.2794 -7.0776 42 1 1.2014 -5.5516 -8.6885 43 1 -0.0022 -6.7576 -8.1471 44 1 4.0058 0.1473 -1.0994 45 1 3.9313 -1.3419 -2.0711 46 1 5.0362 -1.7762 0.0968 47 1 3.4904 -2.6542 -0.0020 48 1 3.9928 -0.0050 1.4312 49 1 3.6501 -1.5798 2.1926 50 1 3.0084 0.1684 3.2994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994304524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:12 Heat of formation + Delta-G solvation = -33.913860 kcal Electronic energy + Delta-G solvation = -30648.064887 eV Core-core repulsion = 26640.484882 eV Total energy + Delta-G solvation = -4007.580006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.91796 -39.84502 -38.18270 -37.27134 -34.18055 -33.01731 -32.50702 -31.78066 -31.68219 -29.65447 -28.75373 -27.37507 -26.27369 -24.98026 -24.40519 -22.22456 -21.93654 -21.28109 -21.00593 -20.05772 -18.80460 -17.08638 -16.99991 -16.83082 -16.62349 -16.34207 -15.77645 -15.17364 -14.96475 -14.61947 -14.44282 -14.24949 -13.91888 -13.75533 -13.63737 -13.42905 -13.32443 -13.06718 -12.89183 -12.77657 -12.68172 -12.07817 -12.05404 -11.81880 -11.54077 -11.51336 -11.28862 -11.05500 -11.04446 -10.84994 -10.67821 -10.31794 -10.28317 -10.14993 -10.09933 -9.84087 -9.61034 -9.19844 -9.00462 -8.61743 -8.61381 -8.41295 -6.93929 -6.13140 -3.32617 1.02422 1.17719 2.90476 3.30716 3.43878 3.44745 3.61263 3.65426 3.75432 3.96825 4.38178 4.49978 4.58834 4.72209 4.98274 5.04996 5.09228 5.09894 5.13628 5.18227 5.25845 5.27537 5.31196 5.41125 5.44414 5.47142 5.52857 5.59799 5.72032 5.79663 5.87398 5.99173 6.07297 6.10270 6.12049 6.17640 6.30112 6.35842 6.37851 6.45786 6.46522 6.51039 6.60830 6.74226 6.76954 6.88653 6.96242 7.04315 7.15668 7.93559 7.95700 8.50967 8.56692 9.03538 9.77577 10.22418 11.15340 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.002471 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.997847 B =11328.899786 C =11658.016887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.161 3.839 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.076 0.924 6 N -0.702 5.702 7 C 0.510 3.490 8 O -0.547 6.547 9 C -0.106 4.106 10 C -0.049 4.049 11 C -0.099 4.099 12 C -0.091 4.091 13 C -0.139 4.139 14 C -0.133 4.133 15 C -0.078 4.078 16 C 0.092 3.908 17 O -0.363 6.363 18 C 0.093 3.907 19 C -0.121 4.121 20 C -0.134 4.134 21 C 0.151 3.849 22 N -0.593 5.593 23 C -0.353 4.353 24 H 0.062 0.938 25 C -0.022 4.022 26 N -0.915 5.915 27 Si 1.067 2.933 28 H -0.294 1.294 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.409 0.591 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.016 0.984 49 H 0.077 0.923 50 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -10.308 -17.153 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 H 0.053 0.947 4 C 0.029 3.971 5 H 0.094 0.906 6 N -0.353 5.353 7 C 0.295 3.705 8 O -0.425 6.425 9 C -0.146 4.146 10 C -0.049 4.049 11 C -0.117 4.117 12 C -0.109 4.109 13 C -0.139 4.139 14 C -0.133 4.133 15 C -0.096 4.096 16 C 0.016 3.984 17 O -0.282 6.282 18 C 0.016 3.984 19 C -0.160 4.160 20 C -0.173 4.173 21 C 0.025 3.975 22 N -0.318 5.318 23 C -0.482 4.482 24 H 0.080 0.920 25 C -0.225 4.225 26 N -0.554 5.554 27 Si 0.897 3.103 28 H -0.221 1.221 29 H -0.219 1.219 30 H -0.217 1.217 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.034 0.966 49 H 0.096 0.904 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.053 -10.396 -16.492 19.912 hybrid contribution 0.039 0.397 -0.860 0.948 sum -4.015 -9.999 -17.352 20.426 Atomic orbital electron populations 1.21747 0.95387 1.01465 1.00345 1.20620 0.93632 0.93661 0.86718 0.94687 1.21413 0.92699 0.83343 0.99627 0.90634 1.46021 1.61516 1.18740 1.09036 1.20366 0.79199 0.87088 0.83805 1.90690 1.50053 1.67168 1.34578 1.20708 1.03756 0.95577 0.94571 1.19267 0.94032 0.96954 0.94676 1.20980 0.97776 0.97808 0.95174 1.20300 0.96917 1.00401 0.93330 1.20981 0.95824 1.00357 0.96762 1.20922 0.96745 1.00214 0.95403 1.20189 0.98487 0.99044 0.91930 1.21729 0.93033 1.02344 0.81297 1.89072 1.44066 1.66569 1.28451 1.21717 0.91145 0.94027 0.91470 1.21765 0.95707 1.00341 0.98158 1.22011 0.99000 0.99575 0.96708 1.20969 0.84280 0.96774 0.95479 1.44223 1.02634 1.65284 1.19655 1.19950 0.96066 1.43929 0.88258 0.92019 1.25850 1.00201 1.00631 0.95793 1.70750 1.25706 1.21286 1.37695 0.83469 0.74833 0.75921 0.76038 1.22098 1.21888 1.21693 0.91828 0.94314 0.92712 0.75453 0.87802 0.87909 0.85522 0.85764 0.85830 0.88521 0.90582 0.88647 0.90681 0.92019 0.92895 0.93295 0.92494 0.96578 0.90418 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.72 37.16 0.29 -2.06 16 2 C 0.16 3.08 3.18 -67.82 -0.22 2.86 16 3 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.14 2.33 2.32 -68.03 -0.16 2.18 16 5 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 6 N -0.70 -11.01 3.45 -53.90 -0.19 -11.19 16 7 C 0.51 7.72 7.79 -10.98 -0.09 7.64 16 8 O -0.55 -10.16 15.70 5.56 0.09 -10.08 16 9 C -0.11 -1.21 5.83 -29.03 -0.17 -1.38 16 10 C -0.05 -0.59 4.38 -104.59 -0.46 -1.05 16 11 C -0.10 -1.14 9.70 -39.55 -0.38 -1.52 16 12 C -0.09 -0.97 10.04 -39.66 -0.40 -1.37 16 13 C -0.14 -1.53 6.32 -104.40 -0.66 -2.19 16 14 C -0.13 -1.52 6.32 -104.40 -0.66 -2.18 16 15 C -0.08 -0.92 9.70 -39.66 -0.38 -1.31 16 16 C 0.09 0.90 7.63 36.19 0.28 1.17 16 17 O -0.36 -4.08 11.72 -35.23 -0.41 -4.49 16 18 C 0.09 0.86 7.63 36.19 0.28 1.13 16 19 C -0.12 -2.07 5.58 -26.69 -0.15 -2.22 16 20 C -0.13 -2.41 5.93 -26.61 -0.16 -2.56 16 21 C 0.15 3.27 4.69 -3.71 -0.02 3.25 16 22 N -0.59 -13.12 2.50 -165.02 -0.41 -13.53 16 23 C -0.35 -8.69 8.48 -15.06 -0.13 -8.82 16 24 H 0.06 1.50 6.28 -52.48 -0.33 1.17 16 25 C -0.02 -0.57 4.69 -17.43 -0.08 -0.65 16 26 N -0.91 -25.95 12.52 55.49 0.69 -25.25 16 27 Si 1.07 23.68 29.98 -169.99 -5.10 18.58 16 28 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.95 6.37 -51.93 -0.33 0.62 16 34 H 0.41 6.53 7.74 -40.82 -0.32 6.21 16 35 H 0.10 1.01 8.09 -51.93 -0.42 0.59 16 36 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.03 7.53 -51.93 -0.39 0.64 16 48 H 0.02 0.37 7.84 -51.93 -0.41 -0.04 16 49 H 0.08 1.90 6.42 -51.93 -0.33 1.57 16 50 H 0.27 7.75 6.63 -40.82 -0.27 7.48 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -30.65 392.74 -10.55 -41.20 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -7.88 Total: 7.92 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.27 Total: -9.07 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.10 Total: -49.98 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.33 Total: -14.57 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.10 Total: 18.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.65 -10.55 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994304524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.288 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds