Wall clock time and date at job start Wed Apr 1 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.70497 * 2 1 4 4 C 1.52760 * 109.51198 * 239.87778 * 2 1 3 5 5 H 1.09000 * 109.56020 * 65.67169 * 4 2 1 6 6 N 1.46499 * 109.38409 * 305.63668 * 4 2 1 7 7 C 1.34783 * 119.99698 * 155.14298 * 6 4 2 8 8 O 1.21278 * 120.00499 * 359.97438 * 7 6 4 9 9 C 1.50706 * 119.99554 * 179.97438 * 7 6 4 10 10 C 1.50701 * 109.46756 * 179.97438 * 9 7 6 11 11 C 1.38260 * 119.98002 * 90.00085 * 10 9 7 12 12 C 1.38296 * 120.04212 * 179.97438 * 11 10 9 13 13 C 1.37969 * 119.92143 * 359.97438 * 12 11 10 14 14 C 1.38602 * 120.03544 * 0.02562 * 13 12 11 15 15 C 1.37970 * 120.04093 * 359.74128 * 14 13 12 16 16 C 1.51082 * 107.27243 * 179.97438 * 14 13 12 17 17 O 1.43944 * 105.95303 * 342.31334 * 16 14 13 18 18 C 1.43934 * 104.95235 * 28.44600 * 17 16 14 19 19 C 1.53039 * 109.38415 * 185.71022 * 4 2 1 20 20 C 1.53039 * 109.53891 * 61.24307 * 19 4 2 21 21 C 1.53200 * 109.30850 * 298.63362 * 20 19 4 22 22 N 1.46927 * 109.58114 * 120.35204 * 2 1 3 23 23 C 1.36935 * 120.63424 * 353.41687 * 22 2 1 24 24 H 1.08004 * 120.00016 * 29.32474 * 23 22 2 25 25 C 1.38813 * 120.00307 * 209.32339 * 23 22 2 26 26 N 1.31624 * 119.99795 * 24.22941 * 25 23 22 27 27 Si 1.86792 * 120.00178 * 204.22761 * 25 23 22 28 28 H 1.48500 * 109.47397 * 89.99851 * 27 25 23 29 29 H 1.48504 * 109.47424 * 329.99967 * 27 25 23 30 30 H 1.48503 * 109.47127 * 209.99987 * 27 25 23 31 31 H 1.09001 * 109.47482 * 299.65279 * 1 2 3 32 32 H 1.09005 * 109.46588 * 59.64416 * 1 2 3 33 33 H 1.08996 * 109.47397 * 179.64405 * 1 2 3 34 34 H 0.96996 * 120.00366 * 335.14253 * 6 4 2 35 35 H 1.08999 * 109.47392 * 299.99888 * 9 7 6 36 36 H 1.09000 * 109.47009 * 60.00170 * 9 7 6 37 37 H 1.08001 * 119.98057 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.04100 * 180.02562 * 12 11 10 39 39 H 1.08002 * 120.03802 * 180.28124 * 15 14 13 40 40 H 1.08999 * 110.15474 * 223.19380 * 16 14 13 41 41 H 1.08998 * 110.21388 * 101.46496 * 16 14 13 42 42 H 1.09009 * 110.15620 * 212.43512 * 18 17 16 43 43 H 1.08997 * 110.15801 * 90.67822 * 18 17 16 44 44 H 1.08995 * 109.45977 * 301.21945 * 19 4 2 45 45 H 1.09000 * 109.45751 * 181.26032 * 19 4 2 46 46 H 1.08998 * 109.49821 * 178.68732 * 20 19 4 47 47 H 1.08995 * 109.50357 * 58.58168 * 20 19 4 48 48 H 1.08998 * 109.58708 * 294.84642 * 21 20 19 49 49 H 1.08998 * 109.58301 * 174.42201 * 21 20 19 50 50 H 0.97002 * 119.99613 * 4.06243 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2454 5 1 1.7633 -0.1566 -2.1349 6 7 1.4437 -2.0590 -1.3108 7 6 1.3202 -2.6845 -2.4983 8 8 1.7024 -2.1408 -3.5128 9 6 0.7070 -4.0595 -2.5655 10 6 0.6855 -4.5305 -3.9969 11 6 1.7587 -5.2364 -4.5081 12 6 1.7400 -5.6697 -5.8214 13 6 0.6489 -5.3971 -6.6206 14 6 -0.4270 -4.6893 -6.1080 15 6 -0.4104 -4.2613 -4.7965 16 6 -1.4453 -4.5564 -7.2161 17 8 -0.7372 -4.8301 -8.4391 18 6 0.3269 -5.7222 -8.0604 19 6 3.5639 -0.8463 -1.1725 20 6 3.9522 -1.6688 0.0583 21 6 3.4643 -0.9519 1.3212 22 7 2.0224 -0.6995 1.1946 23 6 1.1535 -1.1134 2.1686 24 1 0.1372 -1.3729 1.9110 25 6 1.5787 -1.1994 3.4872 26 7 2.5946 -0.4712 3.8999 27 14 0.7092 -2.3483 4.6759 28 1 1.3597 -3.6828 4.6397 29 1 -0.7164 -2.4818 4.2822 30 1 0.7931 -1.7939 6.0510 31 1 -0.3634 0.5084 0.8931 32 1 -0.3633 0.5194 -0.8868 33 1 -0.3634 -1.0276 -0.0064 34 1 1.1376 -2.4938 -0.4996 35 1 1.2977 -4.7505 -1.9641 36 1 -0.3120 -4.0222 -2.1803 37 1 2.6121 -5.4497 -3.8816 38 1 2.5782 -6.2215 -6.2206 39 1 -1.2507 -3.7138 -4.3958 40 1 -1.8500 -3.5444 -7.2348 41 1 -2.2491 -5.2794 -7.0776 42 1 1.2014 -5.5516 -8.6885 43 1 -0.0022 -6.7576 -8.1471 44 1 4.0058 0.1473 -1.0994 45 1 3.9313 -1.3419 -2.0711 46 1 5.0362 -1.7762 0.0968 47 1 3.4904 -2.6542 -0.0020 48 1 3.9928 -0.0050 1.4312 49 1 3.6501 -1.5798 2.1926 50 1 3.0084 0.1684 3.2994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994304524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:11 Heat of formation + Delta-G solvation = -50.563053 kcal Electronic energy + Delta-G solvation = -30648.786851 eV Core-core repulsion = 26640.484882 eV Total energy + Delta-G solvation = -4008.301969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73996 -41.11516 -39.47200 -38.29270 -35.81517 -34.17787 -33.82152 -33.32484 -32.47408 -31.14938 -29.73428 -28.31447 -27.72219 -26.74922 -25.25417 -23.74332 -22.69806 -22.62122 -22.36136 -21.18724 -20.32280 -18.87796 -18.17290 -17.63561 -17.38845 -17.20022 -16.93898 -16.47786 -16.27667 -15.86688 -15.82814 -15.41206 -15.25781 -15.11544 -14.99702 -14.66393 -14.49101 -14.24232 -14.05692 -13.77878 -13.49562 -13.42384 -13.23193 -12.94301 -12.85899 -12.75328 -12.71676 -12.52581 -12.36156 -12.23412 -11.87421 -11.84132 -11.82345 -11.70879 -11.51100 -11.10424 -10.95790 -10.82529 -10.40039 -9.92424 -9.81634 -9.42496 -8.83631 -8.13672 -5.31533 0.19583 0.36504 1.64697 1.70893 1.73152 1.86358 2.27377 2.70587 2.76291 2.94089 3.19503 3.31189 3.47569 3.64112 3.73786 3.89004 3.96536 3.98989 4.07754 4.12696 4.25368 4.27053 4.37699 4.41281 4.44162 4.47567 4.52004 4.57129 4.59421 4.61424 4.63886 4.74542 4.85860 4.87232 4.90845 4.95646 5.03758 5.09125 5.11389 5.24379 5.29889 5.30075 5.32010 5.39201 5.42927 5.55551 5.66483 5.70199 5.95353 6.00296 6.48777 6.70457 7.11874 7.35010 7.86343 8.31871 9.12203 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.002471 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.997847 B =11328.899786 C =11658.016887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.158 3.842 3 H 0.024 0.976 4 C 0.146 3.854 5 H 0.075 0.925 6 N -0.699 5.699 7 C 0.513 3.487 8 O -0.581 6.581 9 C -0.098 4.098 10 C -0.065 4.065 11 C -0.113 4.113 12 C -0.098 4.098 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.092 4.092 16 C 0.091 3.909 17 O -0.383 6.383 18 C 0.091 3.909 19 C -0.115 4.115 20 C -0.119 4.119 21 C 0.158 3.842 22 N -0.602 5.602 23 C -0.336 4.336 24 H 0.069 0.931 25 C -0.078 4.078 26 N -0.952 5.952 27 Si 1.113 2.887 28 H -0.286 1.286 29 H -0.269 1.269 30 H -0.306 1.306 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.410 0.590 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.059 0.941 48 H -0.002 1.002 49 H 0.046 0.954 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -12.116 -18.649 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 H 0.042 0.958 4 C 0.039 3.961 5 H 0.093 0.907 6 N -0.350 5.350 7 C 0.301 3.699 8 O -0.462 6.462 9 C -0.137 4.137 10 C -0.065 4.065 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.110 4.110 16 C 0.015 3.985 17 O -0.302 6.302 18 C 0.015 3.985 19 C -0.154 4.154 20 C -0.158 4.158 21 C 0.032 3.968 22 N -0.328 5.328 23 C -0.466 4.466 24 H 0.087 0.913 25 C -0.275 4.275 26 N -0.594 5.594 27 Si 0.940 3.060 28 H -0.212 1.212 29 H -0.194 1.194 30 H -0.234 1.234 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.016 0.984 49 H 0.065 0.935 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.100 -12.220 -18.023 22.365 hybrid contribution 0.358 1.010 -0.494 1.180 sum -4.742 -11.210 -18.518 22.160 Atomic orbital electron populations 1.21659 0.94119 1.01876 1.00440 1.20736 0.94679 0.93090 0.86339 0.95839 1.21137 0.92723 0.84157 0.98092 0.90708 1.45974 1.61522 1.18096 1.09456 1.20947 0.78226 0.88038 0.82711 1.90679 1.51549 1.68324 1.35615 1.20712 1.04922 0.93205 0.94884 1.19419 0.94469 0.97590 0.95056 1.21242 0.98053 0.97932 0.95833 1.20602 0.97540 1.00263 0.93132 1.21311 0.95835 1.00176 0.97693 1.21213 0.97552 1.00337 0.95735 1.20397 0.98953 0.99373 0.92293 1.21852 0.93003 1.03286 0.80348 1.89042 1.44752 1.67201 1.29249 1.21889 0.91248 0.94722 0.90620 1.21707 0.95706 1.00306 0.97631 1.21839 0.99868 0.99146 0.94963 1.20795 0.84205 0.95695 0.96099 1.44388 1.02582 1.65800 1.19985 1.20211 0.96462 1.41465 0.88432 0.91299 1.27038 1.00675 1.01772 0.97988 1.70876 1.27889 1.23004 1.37679 0.82842 0.75278 0.74447 0.73482 1.21243 1.19390 1.23377 0.93882 0.92022 0.92096 0.75368 0.85874 0.85785 0.84500 0.83544 0.84940 0.88046 0.88703 0.87492 0.88702 0.91870 0.92431 0.91765 0.92203 0.98358 0.93536 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.21 7.72 71.98 0.56 -3.65 16 2 C 0.16 5.93 3.18 44.83 0.14 6.07 16 3 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.15 4.80 2.32 44.92 0.10 4.91 16 5 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 6 N -0.70 -20.51 3.45 -442.84 -1.53 -22.03 16 7 C 0.51 14.45 7.79 87.66 0.68 15.13 16 8 O -0.58 -20.70 15.70 -3.02 -0.05 -20.75 16 9 C -0.10 -1.97 5.83 29.10 0.17 -1.80 16 10 C -0.06 -1.44 4.38 -19.84 -0.09 -1.53 16 11 C -0.11 -2.37 9.70 22.29 0.22 -2.16 16 12 C -0.10 -1.88 10.04 22.22 0.22 -1.66 16 13 C -0.15 -3.04 6.32 -19.72 -0.12 -3.17 16 14 C -0.15 -3.17 6.32 -19.72 -0.12 -3.30 16 15 C -0.09 -2.02 9.70 22.22 0.22 -1.81 16 16 C 0.09 1.63 7.63 71.36 0.54 2.18 16 17 O -0.38 -8.03 11.72 -148.98 -1.75 -9.78 16 18 C 0.09 1.51 7.63 71.36 0.54 2.05 16 19 C -0.11 -3.77 5.58 30.62 0.17 -3.60 16 20 C -0.12 -4.16 5.93 30.67 0.18 -3.98 16 21 C 0.16 6.93 4.69 86.36 0.40 7.33 16 22 N -0.60 -26.59 2.50 -676.01 -1.69 -28.28 16 23 C -0.34 -16.39 8.48 84.03 0.71 -15.68 16 24 H 0.07 3.24 6.28 -2.91 -0.02 3.22 16 25 C -0.08 -4.13 4.69 84.86 0.40 -3.73 16 26 N -0.95 -55.48 12.52 21.65 0.27 -55.21 16 27 Si 1.11 47.62 29.98 68.60 2.06 49.67 16 28 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 29 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 30 H -0.31 -13.83 7.11 99.48 0.71 -13.13 16 31 H 0.04 1.63 7.62 -2.39 -0.02 1.61 16 32 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.06 1.99 6.37 -2.39 -0.02 1.97 16 34 H 0.41 12.12 7.74 -92.71 -0.72 11.41 16 35 H 0.12 2.01 8.09 -2.39 -0.02 1.99 16 36 H 0.12 1.97 8.08 -2.39 -0.02 1.95 16 37 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.06 2.06 7.53 -2.39 -0.02 2.05 16 48 H 0.00 -0.07 7.84 -2.39 -0.02 -0.09 16 49 H 0.05 2.33 6.42 -2.39 -0.02 2.32 16 50 H 0.25 15.14 6.63 -92.71 -0.61 14.53 16 Total: -1.00 -66.59 392.74 2.63 -63.96 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.38 Total: 30.81 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 4.93 Total: -8.39 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -2.94 Total: -105.52 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -1.79 Total: -30.52 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.06 Total: 49.67 kcal Total: -66.59 2.63 -63.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994304524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.398 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds