Wall clock time and date at job start Wed Apr 1 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.70248 * 2 1 4 4 C 1.53626 * 109.66379 * 120.58482 * 2 1 3 5 5 H 1.09007 * 109.63306 * 54.56159 * 4 2 1 6 6 N 1.46496 * 109.43207 * 294.42232 * 4 2 1 7 7 C 1.34783 * 119.99846 * 155.28652 * 6 4 2 8 8 O 1.21284 * 120.00138 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99737 * 179.97438 * 7 6 4 10 10 C 1.50706 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.38258 * 119.97796 * 90.00363 * 10 9 7 12 12 C 1.38295 * 120.04163 * 180.02562 * 11 10 9 13 13 C 1.37973 * 119.91975 * 0.02562 * 12 11 10 14 14 C 1.38597 * 120.03662 * 0.02562 * 13 12 11 15 15 C 1.37968 * 120.04268 * 359.72652 * 14 13 12 16 16 C 1.51084 * 107.27483 * 179.97438 * 14 13 12 17 17 O 1.43948 * 105.95037 * 17.69447 * 16 14 13 18 18 C 1.43937 * 104.94913 * 331.55079 * 17 16 14 19 19 C 1.53036 * 109.24126 * 174.54776 * 4 2 1 20 20 C 1.53039 * 109.54094 * 298.51196 * 19 4 2 21 21 C 1.53194 * 109.30955 * 61.36698 * 20 19 4 22 22 N 1.46919 * 108.77599 * 305.36645 * 21 20 19 23 23 C 1.36944 * 120.63155 * 233.58594 * 22 21 20 24 24 H 1.07998 * 120.00218 * 149.69824 * 23 22 21 25 25 C 1.38808 * 119.99739 * 329.70445 * 23 22 21 26 26 N 1.31622 * 120.00405 * 145.04924 * 25 23 22 27 27 Si 1.86803 * 119.99880 * 325.04490 * 25 23 22 28 28 H 1.48498 * 109.47163 * 270.00264 * 27 25 23 29 29 H 1.48504 * 109.47083 * 30.00442 * 27 25 23 30 30 H 1.48499 * 109.47281 * 150.00395 * 27 25 23 31 31 H 1.08999 * 109.47021 * 180.35450 * 1 2 3 32 32 H 1.08994 * 109.47311 * 300.35935 * 1 2 3 33 33 H 1.09005 * 109.46654 * 60.35998 * 1 2 3 34 34 H 0.96996 * 120.00261 * 335.28405 * 6 4 2 35 35 H 1.09001 * 109.47976 * 300.00297 * 9 7 6 36 36 H 1.09004 * 109.47251 * 60.00657 * 9 7 6 37 37 H 1.08001 * 119.97950 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.04116 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.04471 * 180.28044 * 15 14 13 40 40 H 1.08995 * 110.15427 * 136.81091 * 16 14 13 41 41 H 1.08998 * 110.15322 * 258.50150 * 16 14 13 42 42 H 1.08999 * 110.15566 * 269.32413 * 18 17 16 43 43 H 1.09004 * 110.15474 * 147.57177 * 18 17 16 44 44 H 1.09004 * 109.45792 * 178.49110 * 19 4 2 45 45 H 1.08998 * 109.45941 * 58.54123 * 19 4 2 46 46 H 1.09001 * 109.49798 * 301.41625 * 20 19 4 47 47 H 1.08996 * 109.49750 * 181.31714 * 20 19 4 48 48 H 1.08997 * 109.58568 * 185.57741 * 21 20 19 49 49 H 1.08999 * 109.70466 * 65.22353 * 21 20 19 50 50 H 0.96997 * 119.99367 * 355.09258 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7361 1.2454 5 1 1.6096 -1.7336 1.2892 6 7 1.6731 0.0155 2.4460 7 6 1.5565 -0.6192 3.6293 8 8 1.7616 -1.8125 3.7002 9 6 1.1724 0.1540 4.8644 10 6 1.1122 -0.7816 6.0443 11 6 2.2412 -0.9986 6.8123 12 6 2.1875 -1.8573 7.8950 13 6 1.0060 -2.4976 8.2076 14 6 -0.1255 -2.2809 7.4371 15 6 -0.0732 -1.4203 6.3600 16 6 -1.2377 -3.1150 8.0286 17 8 -0.8117 -3.4547 9.3610 18 6 0.6262 -3.4720 9.2980 19 6 3.5711 -0.8497 1.1677 20 6 3.9615 -1.6628 -0.0686 21 6 3.4657 -0.9421 -1.3262 22 7 2.0227 -0.6996 -1.1944 23 6 1.1538 -1.1128 -2.1689 24 1 0.1432 -1.3911 -1.9087 25 6 1.5720 -1.1740 -3.4910 26 7 1.1164 -2.1220 -4.2823 27 14 2.7814 0.0893 -4.1475 28 1 2.0355 1.2499 -4.6969 29 1 3.6666 0.5462 -3.0461 30 1 3.6037 -0.5239 -5.2213 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8933 34 1 1.5095 0.9699 2.3894 35 1 1.9150 0.9292 5.0535 36 1 0.1959 0.6149 4.7156 37 1 3.1658 -0.4979 6.5660 38 1 3.0695 -2.0272 8.4947 39 1 -0.9561 -1.2478 5.7623 40 1 -2.1613 -2.5376 8.0655 41 1 -1.3838 -4.0193 7.4379 42 1 0.9792 -4.4723 9.0474 43 1 1.0478 -3.1522 10.2510 44 1 3.9442 -1.3478 2.0627 45 1 4.0065 0.1472 1.0992 46 1 3.5061 -2.6515 -0.0125 47 1 5.0460 -1.7631 -0.1105 48 1 3.6532 -1.5639 -2.2016 49 1 3.9875 0.0087 -1.4348 50 1 0.5448 -2.8192 -3.9244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994304555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:21 Heat of formation + Delta-G solvation = -28.515475 kcal Electronic energy + Delta-G solvation = -30150.710319 eV Core-core repulsion = 26143.364405 eV Total energy + Delta-G solvation = -4007.345914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98816 -39.87228 -38.18752 -37.38671 -34.41312 -33.13282 -32.73350 -31.78231 -31.74048 -30.12863 -28.93715 -27.49586 -26.26029 -24.73240 -24.40394 -22.49658 -22.00188 -21.18527 -20.77216 -20.18284 -19.47426 -17.23747 -16.95127 -16.82957 -16.64409 -16.46159 -16.07317 -15.43908 -14.93682 -14.63680 -14.62163 -14.50971 -14.05357 -13.78356 -13.65229 -13.52119 -13.37273 -13.23955 -12.87031 -12.77838 -12.54090 -12.30158 -12.20510 -11.94590 -11.68781 -11.60663 -11.49584 -11.22683 -11.12115 -10.70771 -10.52528 -10.45573 -10.37040 -10.31392 -9.95708 -9.67429 -9.56042 -9.21076 -9.08216 -8.79731 -8.69792 -8.27954 -7.00637 -6.36342 -3.29897 0.93896 1.10115 2.72637 3.15464 3.49512 3.54837 3.56543 3.60963 3.69519 3.89320 4.32124 4.44959 4.63878 4.64167 4.84274 4.88197 4.95226 5.04397 5.06021 5.07288 5.16469 5.22719 5.24541 5.25135 5.35012 5.40312 5.45465 5.57543 5.62857 5.74223 5.78999 5.89070 6.01683 6.02620 6.03865 6.18093 6.26022 6.27203 6.30579 6.39676 6.41152 6.48939 6.53388 6.62758 6.66237 6.82268 6.83182 6.92254 7.06339 7.65243 8.08139 8.35479 8.44765 9.01469 9.62096 10.21991 11.02831 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.002188 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.757901 B =12793.878630 C =13133.292324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.166 3.834 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.086 0.914 6 N -0.721 5.721 7 C 0.511 3.489 8 O -0.533 6.533 9 C -0.104 4.104 10 C -0.054 4.054 11 C -0.099 4.099 12 C -0.092 4.092 13 C -0.137 4.137 14 C -0.131 4.131 15 C -0.078 4.078 16 C 0.091 3.909 17 O -0.363 6.363 18 C 0.092 3.908 19 C -0.117 4.117 20 C -0.136 4.136 21 C 0.140 3.860 22 N -0.590 5.590 23 C -0.361 4.361 24 H 0.069 0.931 25 C 0.006 3.994 26 N -0.899 5.899 27 Si 1.016 2.984 28 H -0.298 1.298 29 H -0.269 1.269 30 H -0.295 1.295 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.031 0.969 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.962 5.256 24.954 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 H 0.047 0.953 4 C 0.026 3.974 5 H 0.104 0.896 6 N -0.371 5.371 7 C 0.296 3.704 8 O -0.409 6.409 9 C -0.144 4.144 10 C -0.055 4.055 11 C -0.117 4.117 12 C -0.110 4.110 13 C -0.137 4.137 14 C -0.132 4.132 15 C -0.096 4.096 16 C 0.015 3.985 17 O -0.282 6.282 18 C 0.016 3.984 19 C -0.155 4.155 20 C -0.175 4.175 21 C 0.015 3.985 22 N -0.315 5.315 23 C -0.488 4.488 24 H 0.087 0.913 25 C -0.199 4.199 26 N -0.535 5.535 27 Si 0.845 3.155 28 H -0.226 1.226 29 H -0.195 1.195 30 H -0.221 1.221 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.049 0.951 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.706 4.805 23.784 24.325 hybrid contribution -0.632 0.067 0.994 1.180 sum 1.074 4.872 24.778 25.275 Atomic orbital electron populations 1.21771 0.95277 1.01784 1.00194 1.20708 0.93640 0.93285 0.86534 0.95341 1.21827 0.94838 0.97067 0.83705 0.89554 1.46133 1.70413 1.12233 1.08348 1.20395 0.77486 0.88138 0.84340 1.90738 1.49530 1.15038 1.85624 1.20707 1.04692 0.97819 0.91209 1.19238 0.93418 0.97623 0.95180 1.20954 0.97778 0.98361 0.94647 1.20305 0.96466 0.96533 0.97662 1.21002 0.94857 0.99140 0.98699 1.20936 0.96509 0.98624 0.97098 1.20196 0.97985 0.95609 0.95798 1.21748 0.96034 0.97554 0.83168 1.89067 1.19384 1.91330 1.28392 1.21733 0.81655 0.97386 0.97667 1.21750 0.95634 0.99930 0.98215 1.22067 0.99405 0.99986 0.96092 1.21436 0.84602 0.96933 0.95554 1.44356 1.02376 1.65487 1.19249 1.20025 0.97127 1.44318 0.87355 0.91307 1.26150 1.01228 1.00108 0.92386 1.70890 1.32557 1.10258 1.39809 0.84628 0.77004 0.77614 0.76244 1.22617 1.19524 1.22127 0.92730 0.94297 0.91676 0.77031 0.87861 0.87860 0.85551 0.85703 0.85779 0.88497 0.90369 0.90530 0.88606 0.92863 0.92692 0.91944 0.92644 0.91479 0.95147 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.84 37.16 0.29 -2.09 16 2 C 0.17 3.09 3.05 -67.37 -0.21 2.89 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.21 2.01 -67.59 -0.14 2.08 16 5 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 6 N -0.72 -9.26 4.60 -53.47 -0.25 -9.50 16 7 C 0.51 6.80 7.79 -10.98 -0.09 6.71 16 8 O -0.53 -9.56 15.70 5.55 0.09 -9.48 16 9 C -0.10 -0.94 5.83 -29.03 -0.17 -1.10 16 10 C -0.05 -0.58 4.38 -104.59 -0.46 -1.04 16 11 C -0.10 -1.01 9.70 -39.55 -0.38 -1.39 16 12 C -0.09 -0.89 10.04 -39.66 -0.40 -1.29 16 13 C -0.14 -1.42 6.32 -104.40 -0.66 -2.08 16 14 C -0.13 -1.43 6.32 -104.40 -0.66 -2.09 16 15 C -0.08 -0.85 9.70 -39.66 -0.38 -1.23 16 16 C 0.09 0.86 7.63 36.19 0.28 1.14 16 17 O -0.36 -3.85 11.72 -35.23 -0.41 -4.26 16 18 C 0.09 0.81 7.63 36.19 0.28 1.09 16 19 C -0.12 -1.92 5.46 -26.69 -0.15 -2.07 16 20 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 21 C 0.14 2.97 4.38 -3.71 -0.02 2.95 16 22 N -0.59 -13.46 2.67 -164.53 -0.44 -13.90 16 23 C -0.36 -9.60 8.67 -15.06 -0.13 -9.73 16 24 H 0.07 1.95 6.45 -52.49 -0.34 1.62 16 25 C 0.01 0.16 4.83 -17.43 -0.08 0.07 16 26 N -0.90 -26.98 13.70 55.49 0.76 -26.22 16 27 Si 1.02 24.58 27.08 -169.99 -4.60 19.97 16 28 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.27 -5.94 4.73 56.52 0.27 -5.68 16 30 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 31 H 0.05 1.08 7.44 -51.93 -0.39 0.70 16 32 H 0.04 0.55 7.82 -51.93 -0.41 0.15 16 33 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 34 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 35 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 1.55 6.00 -51.93 -0.31 1.24 16 49 H 0.03 0.63 6.54 -51.93 -0.34 0.29 16 50 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -33.34 392.50 -10.30 -43.64 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.12 Total: 3.64 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.24 Total: -9.81 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.08 Total: -49.62 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.33 Total: -13.74 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -4.60 Total: 19.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.34 -10.30 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994304555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.120 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds