Wall clock time and date at job start Wed Apr 1 2020 02:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.70248 * 2 1 4 4 C 1.53626 * 109.66379 * 120.58482 * 2 1 3 5 5 H 1.09007 * 109.63306 * 54.56159 * 4 2 1 6 6 N 1.46496 * 109.43207 * 294.42232 * 4 2 1 7 7 C 1.34783 * 119.99846 * 155.28652 * 6 4 2 8 8 O 1.21284 * 120.00138 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99737 * 179.97438 * 7 6 4 10 10 C 1.50706 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.38258 * 119.97796 * 90.00363 * 10 9 7 12 12 C 1.38295 * 120.04163 * 180.02562 * 11 10 9 13 13 C 1.37973 * 119.91975 * 0.02562 * 12 11 10 14 14 C 1.38597 * 120.03662 * 0.02562 * 13 12 11 15 15 C 1.37968 * 120.04268 * 359.72652 * 14 13 12 16 16 C 1.51084 * 107.27483 * 179.97438 * 14 13 12 17 17 O 1.43948 * 105.95037 * 17.69447 * 16 14 13 18 18 C 1.43937 * 104.94913 * 331.55079 * 17 16 14 19 19 C 1.53036 * 109.24126 * 174.54776 * 4 2 1 20 20 C 1.53039 * 109.54094 * 298.51196 * 19 4 2 21 21 C 1.53194 * 109.30955 * 61.36698 * 20 19 4 22 22 N 1.46919 * 108.77599 * 305.36645 * 21 20 19 23 23 C 1.36944 * 120.63155 * 233.58594 * 22 21 20 24 24 H 1.07998 * 120.00218 * 149.69824 * 23 22 21 25 25 C 1.38808 * 119.99739 * 329.70445 * 23 22 21 26 26 N 1.31622 * 120.00405 * 145.04924 * 25 23 22 27 27 Si 1.86803 * 119.99880 * 325.04490 * 25 23 22 28 28 H 1.48498 * 109.47163 * 270.00264 * 27 25 23 29 29 H 1.48504 * 109.47083 * 30.00442 * 27 25 23 30 30 H 1.48499 * 109.47281 * 150.00395 * 27 25 23 31 31 H 1.08999 * 109.47021 * 180.35450 * 1 2 3 32 32 H 1.08994 * 109.47311 * 300.35935 * 1 2 3 33 33 H 1.09005 * 109.46654 * 60.35998 * 1 2 3 34 34 H 0.96996 * 120.00261 * 335.28405 * 6 4 2 35 35 H 1.09001 * 109.47976 * 300.00297 * 9 7 6 36 36 H 1.09004 * 109.47251 * 60.00657 * 9 7 6 37 37 H 1.08001 * 119.97950 * 359.97438 * 11 10 9 38 38 H 1.08003 * 120.04116 * 179.97438 * 12 11 10 39 39 H 1.08003 * 120.04471 * 180.28044 * 15 14 13 40 40 H 1.08995 * 110.15427 * 136.81091 * 16 14 13 41 41 H 1.08998 * 110.15322 * 258.50150 * 16 14 13 42 42 H 1.08999 * 110.15566 * 269.32413 * 18 17 16 43 43 H 1.09004 * 110.15474 * 147.57177 * 18 17 16 44 44 H 1.09004 * 109.45792 * 178.49110 * 19 4 2 45 45 H 1.08998 * 109.45941 * 58.54123 * 19 4 2 46 46 H 1.09001 * 109.49798 * 301.41625 * 20 19 4 47 47 H 1.08996 * 109.49750 * 181.31714 * 20 19 4 48 48 H 1.08997 * 109.58568 * 185.57741 * 21 20 19 49 49 H 1.08999 * 109.70466 * 65.22353 * 21 20 19 50 50 H 0.96997 * 119.99367 * 355.09258 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7361 1.2454 5 1 1.6096 -1.7336 1.2892 6 7 1.6731 0.0155 2.4460 7 6 1.5565 -0.6192 3.6293 8 8 1.7616 -1.8125 3.7002 9 6 1.1724 0.1540 4.8644 10 6 1.1122 -0.7816 6.0443 11 6 2.2412 -0.9986 6.8123 12 6 2.1875 -1.8573 7.8950 13 6 1.0060 -2.4976 8.2076 14 6 -0.1255 -2.2809 7.4371 15 6 -0.0732 -1.4203 6.3600 16 6 -1.2377 -3.1150 8.0286 17 8 -0.8117 -3.4547 9.3610 18 6 0.6262 -3.4720 9.2980 19 6 3.5711 -0.8497 1.1677 20 6 3.9615 -1.6628 -0.0686 21 6 3.4657 -0.9421 -1.3262 22 7 2.0227 -0.6996 -1.1944 23 6 1.1538 -1.1128 -2.1689 24 1 0.1432 -1.3911 -1.9087 25 6 1.5720 -1.1740 -3.4910 26 7 1.1164 -2.1220 -4.2823 27 14 2.7814 0.0893 -4.1475 28 1 2.0355 1.2499 -4.6969 29 1 3.6666 0.5462 -3.0461 30 1 3.6037 -0.5239 -5.2213 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8933 34 1 1.5095 0.9699 2.3894 35 1 1.9150 0.9292 5.0535 36 1 0.1959 0.6149 4.7156 37 1 3.1658 -0.4979 6.5660 38 1 3.0695 -2.0272 8.4947 39 1 -0.9561 -1.2478 5.7623 40 1 -2.1613 -2.5376 8.0655 41 1 -1.3838 -4.0193 7.4379 42 1 0.9792 -4.4723 9.0474 43 1 1.0478 -3.1522 10.2510 44 1 3.9442 -1.3478 2.0627 45 1 4.0065 0.1472 1.0992 46 1 3.5061 -2.6515 -0.0125 47 1 5.0460 -1.7631 -0.1105 48 1 3.6532 -1.5639 -2.2016 49 1 3.9875 0.0087 -1.4348 50 1 0.5448 -2.8192 -3.9244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994304555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:20 Heat of formation + Delta-G solvation = -50.269319 kcal Electronic energy + Delta-G solvation = -30151.653637 eV Core-core repulsion = 26143.364405 eV Total energy + Delta-G solvation = -4008.289232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74050 -41.00942 -39.47717 -38.33449 -35.90574 -34.48397 -33.83244 -33.47240 -32.48430 -31.58952 -29.80551 -28.38059 -27.65636 -26.43815 -25.29692 -23.95080 -22.71647 -22.35056 -22.10484 -21.39606 -20.91765 -19.02798 -18.04868 -17.65973 -17.46671 -17.36935 -17.00593 -16.54082 -16.32912 -16.08066 -15.88461 -15.45864 -15.27230 -15.12083 -14.97760 -14.74241 -14.66052 -14.17540 -14.09055 -13.75719 -13.58234 -13.48433 -13.35975 -13.03804 -12.96173 -12.92887 -12.74224 -12.52107 -12.32685 -12.14612 -11.97223 -11.84156 -11.81596 -11.58642 -11.34257 -11.13022 -11.10631 -10.84466 -10.38485 -9.98468 -9.82494 -9.43948 -8.96938 -8.51217 -5.41374 0.18583 0.35910 1.55488 1.59695 1.71657 1.78530 2.17422 2.64912 2.72176 2.91414 3.01413 3.18204 3.45156 3.62484 3.72189 3.84101 3.95728 3.96049 4.08469 4.13467 4.25387 4.26891 4.35872 4.38445 4.41786 4.44585 4.51970 4.53754 4.58089 4.63111 4.68413 4.72929 4.76885 4.86104 4.93197 4.96441 5.05180 5.08400 5.09178 5.20074 5.24654 5.29065 5.31382 5.37754 5.43951 5.53845 5.62869 5.67648 5.95228 5.95743 6.31722 6.66301 6.95052 7.36578 7.67147 8.17786 8.83940 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.002188 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.757901 B =12793.878630 C =13133.292324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.163 3.837 3 H 0.059 0.941 4 C 0.146 3.854 5 H 0.042 0.958 6 N -0.708 5.708 7 C 0.511 3.489 8 O -0.585 6.585 9 C -0.092 4.092 10 C -0.069 4.069 11 C -0.109 4.109 12 C -0.099 4.099 13 C -0.151 4.151 14 C -0.151 4.151 15 C -0.095 4.095 16 C 0.089 3.911 17 O -0.380 6.380 18 C 0.089 3.911 19 C -0.108 4.108 20 C -0.130 4.130 21 C 0.135 3.865 22 N -0.607 5.607 23 C -0.339 4.339 24 H 0.036 0.964 25 C -0.052 4.052 26 N -0.941 5.941 27 Si 1.063 2.937 28 H -0.297 1.297 29 H -0.231 1.231 30 H -0.305 1.305 31 H 0.021 0.979 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.417 0.583 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.033 0.967 47 H 0.084 0.916 48 H 0.041 0.959 49 H 0.052 0.948 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 8.408 27.374 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 H 0.077 0.923 4 C 0.039 3.961 5 H 0.060 0.940 6 N -0.360 5.360 7 C 0.299 3.701 8 O -0.464 6.464 9 C -0.131 4.131 10 C -0.070 4.070 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.151 4.151 14 C -0.151 4.151 15 C -0.113 4.113 16 C 0.013 3.987 17 O -0.299 6.299 18 C 0.014 3.986 19 C -0.147 4.147 20 C -0.170 4.170 21 C 0.010 3.990 22 N -0.333 5.333 23 C -0.468 4.468 24 H 0.053 0.947 25 C -0.249 4.249 26 N -0.581 5.581 27 Si 0.889 3.111 28 H -0.224 1.224 29 H -0.155 1.155 30 H -0.233 1.233 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.254 0.746 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.149 0.851 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.133 0.867 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.052 0.948 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.563 8.018 26.263 27.690 hybrid contribution -1.277 -0.989 0.368 1.656 sum 2.286 7.029 26.631 27.637 Atomic orbital electron populations 1.21693 0.95204 1.00019 1.01331 1.20923 0.93824 0.94292 0.85318 0.92315 1.21307 0.95078 0.95142 0.84597 0.93977 1.45893 1.70113 1.12981 1.07007 1.21154 0.76011 0.87680 0.85250 1.90731 1.51708 1.17590 1.86379 1.20736 1.07124 0.97417 0.87872 1.19512 0.93455 0.98130 0.95899 1.21290 0.98379 0.98436 0.94626 1.20644 0.97053 0.96116 0.97889 1.21311 0.95132 0.99539 0.99119 1.21206 0.97282 0.99117 0.97542 1.20444 0.98748 0.95972 0.96108 1.21833 0.96355 0.97698 0.82777 1.89036 1.20435 1.91457 1.28946 1.21885 0.80919 0.97533 0.98299 1.21683 0.95003 1.00930 0.97076 1.21972 1.00914 0.98436 0.95638 1.21518 0.83774 0.97638 0.96055 1.44464 1.02729 1.66468 1.19603 1.19852 0.96352 1.42225 0.88347 0.94671 1.27250 1.03330 1.01097 0.93255 1.71019 1.34973 1.11614 1.40500 0.84016 0.75572 0.75083 0.76446 1.22442 1.15457 1.23271 0.96019 0.90041 0.93504 0.74618 0.84388 0.85205 0.83755 0.83489 0.85080 0.87122 0.90258 0.89868 0.86693 0.92763 0.89988 0.94763 0.89749 0.94037 0.93055 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 7.84 71.98 0.56 -3.81 16 2 C 0.16 5.71 3.05 45.12 0.14 5.85 16 3 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.15 4.64 2.01 45.21 0.09 4.73 16 5 H 0.04 1.74 7.58 -2.38 -0.02 1.72 16 6 N -0.71 -15.74 4.60 -441.47 -2.03 -17.77 16 7 C 0.51 12.23 7.79 87.65 0.68 12.91 16 8 O -0.58 -20.48 15.70 -3.04 -0.05 -20.53 16 9 C -0.09 -1.30 5.83 29.10 0.17 -1.13 16 10 C -0.07 -1.33 4.38 -19.84 -0.09 -1.42 16 11 C -0.11 -1.97 9.70 22.29 0.22 -1.75 16 12 C -0.10 -1.75 10.04 22.22 0.22 -1.53 16 13 C -0.15 -2.98 6.32 -19.72 -0.12 -3.10 16 14 C -0.15 -3.19 6.32 -19.72 -0.12 -3.32 16 15 C -0.09 -1.96 9.70 22.22 0.22 -1.74 16 16 C 0.09 1.65 7.63 71.36 0.54 2.20 16 17 O -0.38 -7.82 11.72 -148.98 -1.75 -9.57 16 18 C 0.09 1.49 7.63 71.36 0.54 2.04 16 19 C -0.11 -3.23 5.46 30.62 0.17 -3.07 16 20 C -0.13 -4.49 6.08 30.67 0.19 -4.30 16 21 C 0.13 5.46 4.38 86.36 0.38 5.84 16 22 N -0.61 -27.25 2.67 -674.44 -1.80 -29.04 16 23 C -0.34 -18.50 8.67 84.03 0.73 -17.78 16 24 H 0.04 2.13 6.45 -2.91 -0.02 2.11 16 25 C -0.05 -2.97 4.83 84.86 0.41 -2.56 16 26 N -0.94 -59.10 13.70 21.65 0.30 -58.81 16 27 Si 1.06 49.71 27.08 68.60 1.86 51.57 16 28 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 29 H -0.23 -9.20 4.73 99.48 0.47 -8.73 16 30 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 31 H 0.02 0.87 7.44 -2.39 -0.02 0.85 16 32 H 0.08 2.10 7.82 -2.39 -0.02 2.09 16 33 H 0.05 1.79 7.63 -2.38 -0.02 1.78 16 34 H 0.42 6.03 8.60 -92.71 -0.80 5.23 16 35 H 0.14 1.03 8.08 -2.39 -0.02 1.01 16 36 H 0.13 1.18 8.09 -2.38 -0.02 1.16 16 37 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.04 1.88 6.00 -2.39 -0.01 1.87 16 49 H 0.05 1.89 6.54 -2.39 -0.02 1.88 16 50 H 0.25 15.94 8.73 -92.71 -0.81 15.13 16 Total: -1.00 -77.49 392.50 1.33 -76.17 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -0.13 Total: 19.92 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.92 Total: -11.95 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -3.53 Total: -105.62 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.79 Total: -30.09 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 1.86 Total: 51.57 kcal Total: -77.49 1.33 -76.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994304555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.898 kcal (2) G-P(sol) polarization free energy of solvation -77.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds