Wall clock time and date at job start Wed Apr 1 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 110.83509 * 2 1 4 4 C 1.54703 * 110.94762 * 123.72194 * 2 1 3 5 5 O 1.43742 * 102.82070 * 143.52472 * 4 2 1 6 6 C 1.35995 * 109.31810 * 332.22944 * 5 4 2 7 7 C 1.39582 * 129.72290 * 198.51413 * 6 5 4 8 8 C 1.37466 * 120.43265 * 180.57565 * 7 6 5 9 9 C 1.39750 * 120.20469 * 0.09062 * 8 7 6 10 10 C 1.47600 * 120.26992 * 179.87463 * 9 8 7 11 11 O 1.21579 * 120.00240 * 7.26343 * 10 9 8 12 12 N 1.34775 * 120.00201 * 187.26603 * 10 9 8 13 13 C 1.47021 * 125.64760 * 354.40606 * 12 10 9 14 14 C 1.54324 * 107.27363 * 181.02422 * 13 12 10 15 15 H 1.09001 * 110.71915 * 263.83004 * 14 13 12 16 16 N 1.46498 * 110.72301 * 140.55862 * 14 13 12 17 17 C 1.36936 * 120.00165 * 86.45436 * 16 14 13 18 18 H 1.08001 * 120.00214 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00074 * 180.02562 * 17 16 14 20 20 N 1.31623 * 120.00056 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99947 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47317 * 59.99624 * 21 19 17 23 23 H 1.48508 * 109.46969 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47197 * 299.99342 * 21 19 17 25 25 C 1.55156 * 102.94245 * 22.19460 * 14 13 12 26 26 C 1.52998 * 111.00577 * 82.57154 * 25 14 13 27 27 C 1.53000 * 111.00648 * 206.39032 * 25 14 13 28 28 C 1.47427 * 125.64998 * 174.10276 * 12 10 9 29 29 C 1.39815 * 119.46399 * 0.14322 * 9 8 7 30 30 C 1.37303 * 119.85711 * 359.38267 * 29 9 8 31 31 H 1.08995 * 109.47335 * 297.72552 * 1 2 3 32 32 H 1.09000 * 109.47308 * 57.72727 * 1 2 3 33 33 H 1.08999 * 109.47105 * 177.73091 * 1 2 3 34 34 H 1.09005 * 110.74244 * 25.19498 * 4 2 1 35 35 H 1.09002 * 110.90102 * 261.93424 * 4 2 1 36 36 H 1.08002 * 119.78442 * 0.59549 * 7 6 5 37 37 H 1.08005 * 119.89950 * 180.11207 * 8 7 6 38 38 H 1.08998 * 109.88521 * 300.43919 * 13 12 10 39 39 H 1.09002 * 109.88134 * 61.45580 * 13 12 10 40 40 H 0.97002 * 120.00219 * 266.45717 * 16 14 13 41 41 H 0.96999 * 120.00183 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.47153 * 59.99912 * 26 25 14 43 43 H 1.08999 * 109.47348 * 180.02562 * 26 25 14 44 44 H 1.09004 * 109.47306 * 300.00550 * 26 25 14 45 45 H 1.08994 * 109.47604 * 59.99305 * 27 25 14 46 46 H 1.08999 * 109.47326 * 180.02562 * 27 25 14 47 47 H 1.09004 * 109.46799 * 299.99780 * 27 25 14 48 48 H 1.09001 * 110.36518 * 274.74310 * 28 12 10 49 49 H 1.08993 * 110.36822 * 37.07100 * 28 12 10 50 50 H 1.07997 * 120.07068 * 179.65989 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9177 1.0188 0.0000 4 6 2.0830 -0.8021 1.2017 5 8 3.2496 -1.4368 0.6518 6 6 3.0761 -1.6162 -0.6851 7 6 3.7448 -2.4690 -1.5649 8 6 3.4180 -2.4875 -2.9000 9 6 2.4125 -1.6494 -3.3894 10 6 2.0624 -1.6661 -4.8232 11 8 2.5533 -2.5001 -5.5592 12 7 1.1985 -0.7569 -5.3166 13 6 0.4463 0.2278 -4.5254 14 6 -0.4294 1.0329 -5.5086 15 1 0.0633 1.9633 -5.7909 16 7 -1.7487 1.2984 -4.9297 17 6 -1.9389 2.3964 -4.1338 18 1 -1.1161 3.0665 -3.9325 19 6 -3.1889 2.6477 -3.5849 20 7 -4.1915 1.8309 -3.8299 21 14 -3.4481 4.1451 -2.4987 22 1 -3.1413 5.3759 -3.2708 23 1 -4.8606 4.1869 -2.0421 24 1 -2.5486 4.0631 -1.3199 25 6 -0.5466 0.0817 -6.7287 26 6 -1.6476 -0.9580 -6.5098 27 6 -0.7891 0.8699 -8.0174 28 6 0.8561 -0.5809 -6.7397 29 6 1.7447 -0.7908 -2.5109 30 6 2.0722 -0.7873 -1.1775 31 1 -0.3634 0.4781 0.9096 32 1 -0.3634 0.5487 -0.8689 33 1 -0.3633 -1.0268 -0.0407 34 1 1.3596 -1.5463 1.5349 35 1 2.3555 -0.1368 2.0210 36 1 4.5238 -3.1187 -1.1941 37 1 3.9397 -3.1521 -3.5728 38 1 -0.1859 -0.2843 -3.8001 39 1 1.1372 0.8945 -4.0095 40 1 -2.4876 0.6965 -5.1102 41 1 -5.0651 2.0066 -3.4466 42 1 -2.6025 -0.4517 -6.3684 43 1 -1.7080 -1.6119 -7.3797 44 1 -1.4164 -1.5512 -5.6250 45 1 0.0421 1.5544 -8.1865 46 1 -0.8678 0.1789 -8.8567 47 1 -1.7150 1.4380 -7.9270 48 1 1.5819 0.0704 -7.2268 49 1 0.8148 -1.5471 -7.2423 50 1 0.9699 -0.1351 -2.8796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996170984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:24 Heat of formation + Delta-G solvation = -4.588357 kcal Electronic energy + Delta-G solvation = -31548.018033 eV Core-core repulsion = 27541.709676 eV Total energy + Delta-G solvation = -4006.308357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.38667 -40.17570 -38.18985 -36.87140 -34.34661 -34.09722 -33.33756 -30.99489 -30.42937 -29.84432 -27.77976 -27.03248 -26.79260 -26.14940 -24.44209 -23.46372 -22.67352 -21.38021 -20.89440 -19.35756 -18.70314 -17.63938 -17.31889 -16.95818 -16.57576 -16.04049 -15.74023 -15.31242 -14.75484 -14.44865 -14.24023 -14.11594 -13.93256 -13.65347 -13.54695 -13.34516 -13.20009 -12.80160 -12.73953 -12.54923 -12.39320 -12.30852 -12.10714 -12.06338 -11.71029 -11.54731 -11.25888 -11.15945 -11.10629 -10.96056 -10.86522 -10.69568 -10.58402 -10.31878 -10.25322 -9.92672 -9.78834 -9.67634 -9.02405 -8.98185 -8.43322 -8.15709 -7.15448 -5.92031 -3.22740 0.88053 1.29557 2.89078 3.14467 3.21281 3.32957 3.39099 3.40007 3.84665 4.24545 4.39003 4.45354 4.63128 4.73586 4.85008 4.96417 5.00733 5.09115 5.16197 5.23231 5.27216 5.37250 5.42925 5.46164 5.52478 5.55550 5.65798 5.71570 5.72841 5.80994 5.91264 5.96872 5.98288 5.99798 6.05817 6.09970 6.13136 6.24404 6.26325 6.30972 6.33339 6.35875 6.40201 6.46022 6.56823 6.60372 6.71536 6.83528 7.03897 7.56013 7.76314 8.25850 8.36698 9.38301 9.92208 10.27537 11.29721 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.004819 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.209208 B = 5809.457009 C = 8758.171358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.098 0.902 4 C 0.053 3.947 5 O -0.305 6.305 6 C 0.126 3.874 7 C -0.153 4.153 8 C -0.027 4.027 9 C -0.161 4.161 10 C 0.576 3.424 11 O -0.554 6.554 12 N -0.605 5.605 13 C 0.063 3.937 14 C 0.178 3.822 15 H 0.067 0.933 16 N -0.711 5.711 17 C -0.250 4.250 18 H 0.071 0.929 19 C -0.004 4.004 20 N -0.928 5.928 21 Si 0.905 3.095 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.086 4.086 26 C -0.132 4.132 27 C -0.129 4.129 28 C 0.118 3.882 29 C -0.067 4.067 30 C -0.176 4.176 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.390 0.610 41 H 0.258 0.742 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 -5.136 3.462 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.116 0.884 4 C -0.021 4.021 5 O -0.218 6.218 6 C 0.080 3.920 7 C -0.172 4.172 8 C -0.046 4.046 9 C -0.164 4.164 10 C 0.367 3.633 11 O -0.434 6.434 12 N -0.337 5.337 13 C -0.062 4.062 14 C 0.066 3.934 15 H 0.085 0.915 16 N -0.353 5.353 17 C -0.381 4.381 18 H 0.089 0.911 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.735 3.265 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.087 4.087 26 C -0.190 4.190 27 C -0.187 4.187 28 C -0.005 4.005 29 C -0.084 4.084 30 C -0.176 4.176 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.228 0.772 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 11.599 -5.510 3.367 13.275 hybrid contribution -0.501 0.763 0.850 1.247 sum 11.098 -4.747 4.217 12.786 Atomic orbital electron populations 1.21761 0.92039 1.02840 1.03555 1.21410 0.98001 0.99518 0.90827 0.88384 1.24019 0.85806 0.95825 0.96498 1.86763 1.39589 1.76956 1.18515 1.19918 0.94539 0.93588 0.83928 1.20131 1.03941 1.01101 0.91984 1.20923 0.94148 0.95641 0.93908 1.19704 1.01350 1.02040 0.93294 1.17770 0.78318 0.80137 0.87093 1.90731 1.54716 1.37685 1.60251 1.48308 1.42314 1.34122 1.08993 1.23759 0.94784 0.90904 0.96789 1.21277 0.88084 0.94585 0.89465 0.91478 1.42540 1.05405 1.29672 1.57680 1.19188 0.95160 1.01586 1.22193 0.91107 1.24726 0.95878 0.98705 1.00826 1.69639 1.01303 1.38076 1.48482 0.86323 0.76929 0.82732 0.80491 1.21175 1.21676 1.21157 1.22017 0.93632 0.96264 0.96801 1.21648 0.98766 0.97609 1.00958 1.21646 1.02523 0.99343 0.95157 1.22376 0.95472 1.00787 0.81862 1.22180 0.98485 0.96635 0.91149 1.20729 1.01043 1.00549 0.95323 0.91871 0.90434 0.92197 0.90253 0.87541 0.85024 0.84044 0.89912 0.91492 0.77221 0.93250 0.90867 0.93221 0.92762 0.92794 0.93041 0.91311 0.91524 0.90614 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.16 37.15 0.34 -1.39 16 2 C -0.08 -0.92 3.73 -90.40 -0.34 -1.26 16 3 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 4 C 0.05 0.53 7.55 38.05 0.29 0.82 16 5 O -0.30 -3.89 11.09 -19.72 -0.22 -4.11 16 6 C 0.13 1.71 7.05 -38.73 -0.27 1.44 16 7 C -0.15 -1.94 10.05 -39.36 -0.40 -2.33 16 8 C -0.03 -0.38 9.57 -39.30 -0.38 -0.75 16 9 C -0.16 -2.48 5.88 -104.92 -0.62 -3.10 16 10 C 0.58 9.86 7.80 -12.44 -0.10 9.76 16 11 O -0.55 -10.69 16.60 5.30 0.09 -10.60 16 12 N -0.61 -9.71 3.31 -175.24 -0.58 -10.29 16 13 C 0.06 1.03 4.30 -3.06 -0.01 1.02 16 14 C 0.18 3.13 2.85 -66.10 -0.19 2.94 16 15 H 0.07 1.19 8.02 -51.93 -0.42 0.77 16 16 N -0.71 -15.50 5.08 -51.65 -0.26 -15.76 16 17 C -0.25 -6.14 9.98 -15.06 -0.15 -6.29 16 18 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 20 N -0.93 -25.68 13.06 55.49 0.72 -24.95 16 21 Si 0.90 20.61 29.55 -169.99 -5.02 15.59 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.09 -1.30 0.87 -152.24 -0.13 -1.43 16 26 C -0.13 -2.09 7.94 37.16 0.30 -1.79 16 27 C -0.13 -1.75 8.68 37.16 0.32 -1.43 16 28 C 0.12 1.74 5.88 -2.41 -0.01 1.73 16 29 C -0.07 -0.99 8.48 -39.33 -0.33 -1.33 16 30 C -0.18 -2.42 5.68 -104.13 -0.59 -3.01 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 35 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.14 1.81 7.67 -52.48 -0.40 1.41 16 38 H 0.08 1.46 6.62 -51.93 -0.34 1.12 16 39 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 40 H 0.39 9.11 5.26 -40.82 -0.21 8.90 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.91 7.91 -51.93 -0.41 0.50 16 45 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 49 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 50 H 0.17 2.62 2.76 -57.24 -0.16 2.46 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -29.09 393.48 -9.34 -38.44 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -7.63 Total: 12.38 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.37 Total: -6.63 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.12 Total: -51.00 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.13 Total: -14.71 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.09 -9.34 -38.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996170984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.849 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds