Wall clock time and date at job start Wed Apr 1 2020 03:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47273 * 2 1 4 4 N 1.46494 * 109.46847 * 119.99894 * 2 1 3 5 5 C 1.34779 * 120.00338 * 274.72535 * 4 2 1 6 6 O 1.21586 * 119.99827 * 0.27532 * 5 4 2 7 7 C 1.47528 * 120.00349 * 180.27624 * 5 4 2 8 8 C 1.39534 * 120.05240 * 359.72257 * 7 5 4 9 9 C 1.37784 * 120.18973 * 179.84803 * 8 7 5 10 10 C 1.38649 * 119.97270 * 0.39415 * 9 8 7 11 11 C 1.37656 * 120.31691 * 359.65856 * 10 9 8 12 12 C 1.38880 * 120.88114 * 0.32350 * 11 10 9 13 13 O 1.35858 * 111.32117 * 179.29959 * 12 11 10 14 14 C 1.43770 * 109.29270 * 18.84788 * 13 12 11 15 15 C 1.51676 * 132.13366 * 180.57328 * 11 10 9 16 16 C 1.52995 * 109.47150 * 239.99836 * 2 1 3 17 17 C 1.53039 * 109.46400 * 180.02562 * 16 2 1 18 18 C 1.53191 * 109.31699 * 178.60203 * 17 16 2 19 19 N 1.46925 * 108.76451 * 54.65603 * 18 17 16 20 20 C 1.36932 * 120.63458 * 126.40737 * 19 18 17 21 21 H 1.08001 * 119.99670 * 331.82735 * 20 19 18 22 22 C 1.38807 * 120.00289 * 151.82199 * 20 19 18 23 23 N 1.31612 * 120.00074 * 343.07329 * 22 20 19 24 24 Si 1.86806 * 119.99756 * 163.07143 * 22 20 19 25 25 H 1.48501 * 109.47267 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47003 * 120.00632 * 24 22 20 27 27 H 1.48501 * 109.47009 * 240.00218 * 24 22 20 28 28 C 1.46930 * 118.73845 * 306.38473 * 19 18 17 29 29 C 1.53040 * 109.46046 * 59.97543 * 16 2 1 30 30 H 1.08999 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47421 * 300.00523 * 1 2 3 32 32 H 1.09008 * 109.47076 * 59.99809 * 1 2 3 33 33 H 0.97010 * 120.00345 * 94.99641 * 4 2 1 34 34 H 1.08004 * 119.90507 * 0.09897 * 8 7 5 35 35 H 1.07994 * 120.01810 * 180.10616 * 9 8 7 36 36 H 1.07996 * 119.84241 * 179.68424 * 10 9 8 37 37 H 1.08999 * 110.75454 * 90.66251 * 14 13 12 38 38 H 1.08999 * 110.75372 * 213.84809 * 14 13 12 39 39 H 1.08997 * 110.95276 * 46.13142 * 15 11 10 40 40 H 1.09006 * 110.97577 * 282.44385 * 15 11 10 41 41 H 1.09000 * 109.46262 * 300.00316 * 16 2 1 42 42 H 1.09001 * 109.49509 * 298.56991 * 17 16 2 43 43 H 1.09003 * 109.49261 * 58.65801 * 17 16 2 44 44 H 1.09000 * 109.59666 * 294.86450 * 18 17 16 45 45 H 1.09002 * 109.70203 * 174.50744 * 18 17 16 46 46 H 0.97003 * 119.99965 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.58224 * 293.82461 * 28 19 18 48 48 H 1.08998 * 109.70485 * 173.46919 * 28 19 18 49 49 H 1.09000 * 109.50100 * 301.33405 * 29 16 2 50 50 H 1.08998 * 109.49880 * 61.43745 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1522 -0.0169 2.3558 6 8 1.8631 1.1628 2.4104 7 6 2.6497 -0.7109 3.5589 8 6 2.9764 -2.0661 3.4989 9 6 3.4442 -2.7163 4.6200 10 6 3.5836 -2.0253 5.8139 11 6 3.2632 -0.6884 5.8845 12 6 2.7900 -0.0090 4.7695 13 8 2.5218 1.2908 5.0600 14 6 3.2096 1.6593 6.2676 15 6 3.3210 0.3131 7.0221 16 6 2.0400 -0.7213 -1.2492 17 6 3.5704 -0.7217 -1.2487 18 6 4.0773 -1.4749 -2.4826 19 7 3.4748 -0.8770 -3.6818 20 6 4.2606 -0.4516 -4.7194 21 1 5.2717 -0.1221 -4.5311 22 6 3.7577 -0.4438 -6.0131 23 7 2.6779 -1.1379 -6.3036 24 14 4.6135 0.5520 -7.3419 25 1 5.7966 1.2372 -6.7623 26 1 5.0521 -0.3536 -8.4339 27 1 3.6722 1.5637 -7.8858 28 6 2.0129 -0.7448 -3.7469 29 6 1.5292 0.0000 -2.4986 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6318 1.1527 34 1 2.8661 -2.6060 2.5701 35 1 3.6979 -3.7648 4.5701 36 1 3.9456 -2.5382 6.6926 37 1 4.1985 2.0586 6.0424 38 1 2.6252 2.3791 6.8406 39 1 4.2689 0.2427 7.5556 40 1 2.4814 0.1780 7.7040 41 1 1.6766 -1.7489 -1.2490 42 1 3.9345 0.3054 -1.2741 43 1 3.9337 -1.2147 -0.3469 44 1 3.7905 -2.5242 -2.4138 45 1 5.1629 -1.3960 -2.5410 46 1 2.3262 -1.1322 -7.2076 47 1 1.5577 -1.7346 -3.7812 48 1 1.7340 -0.1832 -4.6385 49 1 0.4395 0.0206 -2.4869 50 1 1.9128 1.0201 -2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997313054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:32 Heat of formation + Delta-G solvation = -25.081989 kcal Electronic energy + Delta-G solvation = -30333.719040 eV Core-core repulsion = 26326.522012 eV Total energy + Delta-G solvation = -4007.197027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.51671 -39.74307 -37.98146 -37.42771 -35.25064 -33.27392 -32.66971 -31.38574 -30.47265 -29.75071 -29.50364 -28.80056 -25.42593 -24.55414 -23.51760 -22.56743 -22.27940 -21.96961 -20.59437 -20.28327 -19.09279 -17.86133 -17.46529 -16.86983 -16.63762 -16.42211 -15.70738 -15.28684 -14.90847 -14.78797 -14.23117 -14.03707 -13.77504 -13.59413 -13.53473 -13.39478 -13.30939 -13.18435 -12.88785 -12.74529 -12.29845 -12.19546 -12.14215 -12.12240 -11.77790 -11.58403 -11.28824 -11.21032 -11.07759 -10.95627 -10.69822 -10.37861 -10.17585 -10.11029 -9.90907 -9.78472 -9.48914 -9.38372 -9.28671 -8.85488 -8.46900 -8.44185 -6.63116 -5.76098 -3.18147 0.57838 0.97170 2.75873 2.96786 3.21211 3.39030 3.47047 3.49445 3.60720 3.98778 4.17083 4.42958 4.52440 4.61494 4.64225 4.79387 4.92071 4.99627 5.05714 5.13322 5.28143 5.28980 5.32602 5.39500 5.42288 5.54714 5.58066 5.71946 5.78703 5.82268 5.91790 5.92922 6.01621 6.03966 6.14095 6.21377 6.25644 6.34103 6.37190 6.51931 6.60366 6.65947 6.77699 6.81684 6.83606 6.89506 7.03509 7.40902 7.61610 7.69502 7.82943 8.33405 8.48559 9.24906 9.88520 10.45332 11.32340 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.002224 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.157144 B =12589.301071 C =12758.646513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.717 5.717 5 C 0.556 3.444 6 O -0.527 6.527 7 C -0.155 4.155 8 C -0.052 4.052 9 C -0.156 4.156 10 C -0.046 4.046 11 C -0.190 4.190 12 C 0.169 3.831 13 O -0.276 6.276 14 C 0.045 3.955 15 C -0.108 4.108 16 C -0.083 4.083 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.592 5.592 20 C -0.249 4.249 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.903 5.903 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.172 3.828 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.015 0.985 45 H 0.051 0.949 46 H 0.252 0.748 47 H 0.017 0.983 48 H 0.087 0.913 49 H 0.054 0.946 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 -2.355 27.478 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.104 0.896 4 N -0.369 5.369 5 C 0.343 3.657 6 O -0.404 6.404 7 C -0.159 4.159 8 C -0.071 4.071 9 C -0.174 4.174 10 C -0.065 4.065 11 C -0.191 4.191 12 C 0.121 3.879 13 O -0.187 6.187 14 C -0.031 4.031 15 C -0.145 4.145 16 C -0.103 4.103 17 C -0.165 4.165 18 C 0.020 3.980 19 N -0.315 5.315 20 C -0.379 4.379 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.046 3.954 29 C -0.173 4.173 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.231 0.769 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.191 -1.315 27.210 27.268 hybrid contribution 0.585 -0.117 -0.568 0.823 sum -0.607 -1.432 26.642 26.688 Atomic orbital electron populations 1.22202 0.95581 1.01886 1.02334 1.21161 0.93692 0.97595 0.83353 0.89599 1.46040 1.67271 1.13830 1.09747 1.18027 0.78137 0.86642 0.82906 1.90817 1.49741 1.15197 1.84689 1.19351 1.10317 0.94396 0.91843 1.21134 0.94855 0.91883 0.99186 1.20975 1.03423 1.00584 0.92466 1.20470 0.95955 0.91867 0.98189 1.20811 1.07673 0.95743 0.94865 1.19477 0.91610 0.84422 0.92403 1.87024 1.65125 1.23721 1.42878 1.23949 0.98263 0.97080 0.83762 1.21812 1.04119 0.91988 0.96619 1.21332 0.96386 0.99250 0.93291 1.22043 0.94559 1.01402 0.98509 1.20886 0.96507 0.93863 0.86776 1.44057 1.02067 1.69882 1.15517 1.19223 0.97219 1.35875 0.85589 0.91776 1.25034 0.98455 0.99212 0.97046 1.70038 1.24618 1.41013 1.19141 0.86249 0.78972 0.79832 0.81893 1.20287 1.21785 1.21563 1.20762 0.83253 0.96792 0.94588 1.22267 0.98874 1.00103 0.96087 0.92705 0.92730 0.90995 0.76893 0.84609 0.84701 0.85356 0.90244 0.87324 0.88849 0.89007 0.91526 0.92341 0.93436 0.96693 0.92997 0.93746 0.96528 0.89488 0.92771 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.14 37.16 0.34 -1.88 16 2 C 0.15 2.16 2.16 -67.94 -0.15 2.01 16 3 H 0.09 1.48 7.57 -51.93 -0.39 1.08 16 4 N -0.72 -9.42 4.31 -54.86 -0.24 -9.66 16 5 C 0.56 8.39 7.73 -12.47 -0.10 8.30 16 6 O -0.53 -10.02 15.52 -10.30 -0.16 -10.18 16 7 C -0.16 -1.96 5.89 -104.72 -0.62 -2.57 16 8 C -0.05 -0.48 9.51 -39.26 -0.37 -0.85 16 9 C -0.16 -1.18 10.05 -39.60 -0.40 -1.58 16 10 C -0.05 -0.35 10.02 -39.64 -0.40 -0.75 16 11 C -0.19 -1.76 6.27 -104.12 -0.65 -2.42 16 12 C 0.17 2.12 6.73 -38.44 -0.26 1.86 16 13 O -0.28 -3.68 10.12 -34.89 -0.35 -4.04 16 14 C 0.04 0.35 8.01 38.06 0.30 0.66 16 15 C -0.11 -0.70 7.12 -26.50 -0.19 -0.89 16 16 C -0.08 -1.34 1.79 -90.58 -0.16 -1.50 16 17 C -0.13 -2.16 5.22 -26.61 -0.14 -2.30 16 18 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 19 N -0.59 -14.81 2.99 -172.32 -0.52 -15.33 16 20 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 21 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 22 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 23 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 24 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 29 C -0.13 -2.50 5.04 -26.61 -0.13 -2.63 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.97 6.40 -51.92 -0.33 0.64 16 33 H 0.40 4.18 6.40 -40.82 -0.26 3.92 16 34 H 0.14 0.96 6.37 -52.48 -0.33 0.62 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.70 7.41 -51.93 -0.38 0.31 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 49 H 0.05 0.91 6.36 -51.93 -0.33 0.58 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -34.30 392.43 -10.76 -45.06 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.81 Total: 1.63 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.19 Total: -4.61 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.13 Total: -50.64 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.51 Total: -14.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.30 -10.76 -45.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997313054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.977 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds