Wall clock time and date at job start Wed Apr 1 2020 03:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47273 * 2 1 4 4 N 1.46494 * 109.46847 * 119.99894 * 2 1 3 5 5 C 1.34779 * 120.00338 * 274.72535 * 4 2 1 6 6 O 1.21586 * 119.99827 * 0.27532 * 5 4 2 7 7 C 1.47528 * 120.00349 * 180.27624 * 5 4 2 8 8 C 1.39534 * 120.05240 * 359.72257 * 7 5 4 9 9 C 1.37784 * 120.18973 * 179.84803 * 8 7 5 10 10 C 1.38649 * 119.97270 * 0.39415 * 9 8 7 11 11 C 1.37656 * 120.31691 * 359.65856 * 10 9 8 12 12 C 1.38880 * 120.88114 * 0.32350 * 11 10 9 13 13 O 1.35858 * 111.32117 * 179.29959 * 12 11 10 14 14 C 1.43770 * 109.29270 * 18.84788 * 13 12 11 15 15 C 1.51676 * 132.13366 * 180.57328 * 11 10 9 16 16 C 1.52995 * 109.47150 * 239.99836 * 2 1 3 17 17 C 1.53039 * 109.46400 * 180.02562 * 16 2 1 18 18 C 1.53191 * 109.31699 * 178.60203 * 17 16 2 19 19 N 1.46925 * 108.76451 * 54.65603 * 18 17 16 20 20 C 1.36932 * 120.63458 * 126.40737 * 19 18 17 21 21 H 1.08001 * 119.99670 * 331.82735 * 20 19 18 22 22 C 1.38807 * 120.00289 * 151.82199 * 20 19 18 23 23 N 1.31612 * 120.00074 * 343.07329 * 22 20 19 24 24 Si 1.86806 * 119.99756 * 163.07143 * 22 20 19 25 25 H 1.48501 * 109.47267 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47003 * 120.00632 * 24 22 20 27 27 H 1.48501 * 109.47009 * 240.00218 * 24 22 20 28 28 C 1.46930 * 118.73845 * 306.38473 * 19 18 17 29 29 C 1.53040 * 109.46046 * 59.97543 * 16 2 1 30 30 H 1.08999 * 109.47273 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47421 * 300.00523 * 1 2 3 32 32 H 1.09008 * 109.47076 * 59.99809 * 1 2 3 33 33 H 0.97010 * 120.00345 * 94.99641 * 4 2 1 34 34 H 1.08004 * 119.90507 * 0.09897 * 8 7 5 35 35 H 1.07994 * 120.01810 * 180.10616 * 9 8 7 36 36 H 1.07996 * 119.84241 * 179.68424 * 10 9 8 37 37 H 1.08999 * 110.75454 * 90.66251 * 14 13 12 38 38 H 1.08999 * 110.75372 * 213.84809 * 14 13 12 39 39 H 1.08997 * 110.95276 * 46.13142 * 15 11 10 40 40 H 1.09006 * 110.97577 * 282.44385 * 15 11 10 41 41 H 1.09000 * 109.46262 * 300.00316 * 16 2 1 42 42 H 1.09001 * 109.49509 * 298.56991 * 17 16 2 43 43 H 1.09003 * 109.49261 * 58.65801 * 17 16 2 44 44 H 1.09000 * 109.59666 * 294.86450 * 18 17 16 45 45 H 1.09002 * 109.70203 * 174.50744 * 18 17 16 46 46 H 0.97003 * 119.99965 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.58224 * 293.82461 * 28 19 18 48 48 H 1.08998 * 109.70485 * 173.46919 * 28 19 18 49 49 H 1.09000 * 109.50100 * 301.33405 * 29 16 2 50 50 H 1.08998 * 109.49880 * 61.43745 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1522 -0.0169 2.3558 6 8 1.8631 1.1628 2.4104 7 6 2.6497 -0.7109 3.5589 8 6 2.9764 -2.0661 3.4989 9 6 3.4442 -2.7163 4.6200 10 6 3.5836 -2.0253 5.8139 11 6 3.2632 -0.6884 5.8845 12 6 2.7900 -0.0090 4.7695 13 8 2.5218 1.2908 5.0600 14 6 3.2096 1.6593 6.2676 15 6 3.3210 0.3131 7.0221 16 6 2.0400 -0.7213 -1.2492 17 6 3.5704 -0.7217 -1.2487 18 6 4.0773 -1.4749 -2.4826 19 7 3.4748 -0.8770 -3.6818 20 6 4.2606 -0.4516 -4.7194 21 1 5.2717 -0.1221 -4.5311 22 6 3.7577 -0.4438 -6.0131 23 7 2.6779 -1.1379 -6.3036 24 14 4.6135 0.5520 -7.3419 25 1 5.7966 1.2372 -6.7623 26 1 5.0521 -0.3536 -8.4339 27 1 3.6722 1.5637 -7.8858 28 6 2.0129 -0.7448 -3.7469 29 6 1.5292 0.0000 -2.4986 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6318 1.1527 34 1 2.8661 -2.6060 2.5701 35 1 3.6979 -3.7648 4.5701 36 1 3.9456 -2.5382 6.6926 37 1 4.1985 2.0586 6.0424 38 1 2.6252 2.3791 6.8406 39 1 4.2689 0.2427 7.5556 40 1 2.4814 0.1780 7.7040 41 1 1.6766 -1.7489 -1.2490 42 1 3.9345 0.3054 -1.2741 43 1 3.9337 -1.2147 -0.3469 44 1 3.7905 -2.5242 -2.4138 45 1 5.1629 -1.3960 -2.5410 46 1 2.3262 -1.1322 -7.2076 47 1 1.5577 -1.7346 -3.7812 48 1 1.7340 -0.1832 -4.6385 49 1 0.4395 0.0206 -2.4869 50 1 1.9128 1.0201 -2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997313054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:31 Heat of formation + Delta-G solvation = -45.294972 kcal Electronic energy + Delta-G solvation = -30334.595540 eV Core-core repulsion = 26326.522012 eV Total energy + Delta-G solvation = -4008.073528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.24623 -40.89314 -39.38594 -38.24854 -36.78567 -34.57188 -33.81026 -32.81041 -31.48963 -31.25829 -30.55462 -29.85736 -27.17181 -25.55819 -24.53388 -23.79775 -23.54897 -22.95415 -21.91594 -21.41496 -20.64610 -18.85848 -18.56397 -18.18627 -17.64008 -17.14545 -16.94807 -16.64877 -16.06774 -15.90251 -15.69135 -15.31604 -15.22356 -14.88425 -14.78924 -14.51283 -14.38973 -14.15452 -13.99617 -13.93082 -13.54554 -13.42670 -13.36652 -12.92785 -12.81096 -12.73103 -12.69257 -12.63729 -12.41808 -12.18958 -12.14855 -11.99439 -11.81373 -11.79547 -11.49705 -11.25525 -11.08533 -10.83770 -10.53373 -10.17001 -9.86396 -9.17412 -8.65693 -7.87041 -5.31603 -0.16631 0.30419 1.44419 1.46868 1.56916 1.86563 2.14516 2.30523 2.50959 2.79820 3.26971 3.43527 3.56229 3.67604 3.72430 3.80059 3.95543 3.97447 4.06574 4.12665 4.21458 4.32742 4.40208 4.43157 4.49294 4.55788 4.56806 4.59856 4.74332 4.80046 4.81035 4.85691 4.90552 4.96164 4.99860 5.04040 5.11303 5.16912 5.18937 5.28152 5.32417 5.36501 5.40504 5.44382 5.52450 5.56908 5.64982 5.66579 5.80888 6.13918 6.40623 6.57489 7.16566 7.25738 7.88805 8.39383 9.19010 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.002224 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.157144 B =12589.301071 C =12758.646513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.058 0.942 4 N -0.705 5.705 5 C 0.553 3.447 6 O -0.578 6.578 7 C -0.187 4.187 8 C -0.053 4.053 9 C -0.150 4.150 10 C -0.040 4.040 11 C -0.195 4.195 12 C 0.134 3.866 13 O -0.318 6.318 14 C 0.033 3.967 15 C -0.099 4.099 16 C -0.071 4.071 17 C -0.114 4.114 18 C 0.143 3.857 19 N -0.612 5.612 20 C -0.261 4.261 21 H 0.061 0.939 22 C -0.050 4.050 23 N -0.932 5.932 24 Si 0.963 3.037 25 H -0.270 1.270 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.178 3.822 29 C -0.122 4.122 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.411 0.589 34 H 0.156 0.844 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.023 0.977 45 H 0.048 0.952 46 H 0.250 0.750 47 H 0.003 0.997 48 H 0.050 0.950 49 H 0.076 0.924 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.047 -4.277 30.149 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.077 0.923 4 N -0.357 5.357 5 C 0.342 3.658 6 O -0.459 6.459 7 C -0.191 4.191 8 C -0.072 4.072 9 C -0.167 4.167 10 C -0.058 4.058 11 C -0.196 4.196 12 C 0.086 3.914 13 O -0.231 6.231 14 C -0.041 4.041 15 C -0.136 4.136 16 C -0.090 4.090 17 C -0.153 4.153 18 C 0.017 3.983 19 N -0.336 5.336 20 C -0.391 4.391 21 H 0.079 0.921 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.194 1.194 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.052 3.948 29 C -0.161 4.161 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.173 0.827 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.041 0.959 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.021 0.979 48 H 0.069 0.931 49 H 0.095 0.905 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.350 -3.275 29.910 30.091 hybrid contribution 0.376 0.429 -1.319 1.437 sum 0.026 -2.846 28.591 28.732 Atomic orbital electron populations 1.22143 0.94449 1.02935 1.01893 1.20855 0.94454 0.96103 0.83390 0.92341 1.45856 1.66746 1.14378 1.08748 1.18524 0.77220 0.86165 0.83874 1.90781 1.52137 1.17474 1.85533 1.19403 1.12798 0.95921 0.90935 1.21401 0.94402 0.90503 1.00888 1.21428 1.01655 1.02009 0.91655 1.20961 0.94170 0.91141 0.99487 1.21215 1.06937 0.96757 0.94642 1.19907 0.93117 0.84670 0.93666 1.86959 1.66351 1.24765 1.45073 1.24255 0.98440 0.98636 0.82783 1.21866 1.06014 0.89867 0.95836 1.21183 0.95544 0.99810 0.92477 1.21896 0.95229 1.00047 0.98089 1.21042 0.96325 0.94432 0.86457 1.44335 1.02513 1.70555 1.16205 1.19498 0.97434 1.35577 0.86621 0.92111 1.25744 0.99407 1.00384 0.99024 1.70171 1.26008 1.42381 1.19305 0.85275 0.78091 0.78275 0.79226 1.19445 1.21697 1.21697 1.20579 0.82871 0.95944 0.95362 1.22073 1.00179 0.98753 0.95124 0.90838 0.93794 0.90838 0.75089 0.82658 0.81364 0.81859 0.89989 0.85629 0.86241 0.87686 0.89851 0.94242 0.90152 0.95899 0.93336 0.94107 0.97905 0.93131 0.90536 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 9.14 71.98 0.66 -3.46 16 2 C 0.16 4.54 2.16 44.99 0.10 4.63 16 3 H 0.06 2.06 7.57 -2.39 -0.02 2.04 16 4 N -0.70 -17.77 4.31 -445.73 -1.92 -19.69 16 5 C 0.55 16.90 7.73 86.69 0.67 17.57 16 6 O -0.58 -23.08 15.52 10.92 0.17 -22.91 16 7 C -0.19 -4.62 5.89 -19.93 -0.12 -4.74 16 8 C -0.05 -0.85 9.51 22.47 0.21 -0.64 16 9 C -0.15 -1.67 10.05 22.26 0.22 -1.44 16 10 C -0.04 -0.45 10.02 22.23 0.22 -0.22 16 11 C -0.19 -3.20 6.27 -19.54 -0.12 -3.32 16 12 C 0.13 3.35 6.73 23.01 0.15 3.50 16 13 O -0.32 -8.85 10.12 -77.05 -0.78 -9.63 16 14 C 0.03 0.51 8.01 72.57 0.58 1.09 16 15 C -0.10 -1.05 7.12 30.74 0.22 -0.83 16 16 C -0.07 -2.19 1.79 -10.77 -0.02 -2.21 16 17 C -0.11 -3.77 5.22 30.67 0.16 -3.61 16 18 C 0.14 5.82 6.52 86.36 0.56 6.39 16 19 N -0.61 -31.00 2.99 -699.09 -2.09 -33.10 16 20 C -0.26 -14.65 9.58 84.03 0.81 -13.85 16 21 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 22 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 23 N -0.93 -55.51 11.19 21.65 0.24 -55.27 16 24 Si 0.96 45.76 29.59 68.60 2.03 47.79 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 C 0.18 8.56 5.30 86.36 0.46 9.01 16 29 C -0.12 -4.54 5.04 30.67 0.15 -4.39 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.90 6.40 -2.38 -0.02 1.89 16 33 H 0.41 7.67 6.40 -92.70 -0.59 7.07 16 34 H 0.16 1.67 6.37 -2.91 -0.02 1.66 16 35 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 2.15 7.41 -2.39 -0.02 2.13 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 47 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.05 2.79 6.07 -2.39 -0.01 2.77 16 49 H 0.08 2.50 6.36 -2.39 -0.02 2.49 16 50 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -79.16 392.43 3.34 -75.81 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.36 Total: 15.95 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.34 Total: 1.05 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -3.77 Total: -108.06 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.61 Total: -32.54 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -79.16 3.34 -75.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997313054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.519 kcal (2) G-P(sol) polarization free energy of solvation -79.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds