Wall clock time and date at job start Wed Apr 1 2020 03:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46858 * 2 1 4 4 N 1.46496 * 109.47316 * 120.00369 * 2 1 3 5 5 C 1.34779 * 119.99932 * 275.00325 * 4 2 1 6 6 O 1.21279 * 119.99843 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99926 * 179.97438 * 5 4 2 8 8 H 1.09000 * 110.83516 * 56.27711 * 7 5 4 9 9 C 1.54703 * 110.97380 * 292.53221 * 7 5 4 10 10 O 1.43764 * 102.79385 * 216.48063 * 9 7 5 11 11 C 1.36124 * 109.28319 * 27.57756 * 10 9 7 12 12 C 1.39288 * 129.88342 * 161.63512 * 11 10 9 13 13 C 1.37925 * 120.24668 * 179.62593 * 12 11 10 14 14 C 1.38288 * 120.35401 * 359.82666 * 13 12 11 15 15 C 1.38351 * 119.76061 * 0.20717 * 14 13 12 16 16 C 1.37737 * 119.97857 * 0.02562 * 15 14 13 17 17 C 1.52996 * 109.46822 * 240.00224 * 2 1 3 18 18 C 1.53048 * 109.46009 * 180.02562 * 17 2 1 19 19 C 1.53194 * 109.31328 * 178.60410 * 18 17 2 20 20 N 1.46922 * 108.76796 * 54.65735 * 19 18 17 21 21 C 1.36933 * 120.63434 * 126.40588 * 20 19 18 22 22 H 1.08006 * 119.99828 * 332.60417 * 21 20 19 23 23 C 1.38809 * 120.00126 * 152.60174 * 21 20 19 24 24 N 1.31615 * 119.99923 * 159.36310 * 23 21 20 25 25 Si 1.86800 * 120.00056 * 339.36509 * 23 21 20 26 26 H 1.48500 * 109.47251 * 92.90847 * 25 23 21 27 27 H 1.48498 * 109.46873 * 212.90973 * 25 23 21 28 28 H 1.48493 * 109.47337 * 332.90788 * 25 23 21 29 29 C 1.46931 * 118.73649 * 306.38106 * 20 19 18 30 30 C 1.53037 * 109.46230 * 59.97406 * 17 2 1 31 31 H 1.09003 * 109.46858 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46977 * 299.99203 * 1 2 3 33 33 H 1.08999 * 109.47296 * 59.99919 * 1 2 3 34 34 H 0.96998 * 120.00178 * 94.99922 * 4 2 1 35 35 H 1.09001 * 110.75283 * 334.81144 * 9 7 5 36 36 H 1.09005 * 110.74527 * 97.97477 * 9 7 5 37 37 H 1.08002 * 119.87794 * 359.42859 * 12 11 10 38 38 H 1.08007 * 119.82689 * 179.90916 * 13 12 11 39 39 H 1.07994 * 120.11913 * 180.19524 * 14 13 12 40 40 H 1.08003 * 120.01170 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46605 * 299.99948 * 17 2 1 42 42 H 1.09000 * 109.49411 * 298.56811 * 18 17 2 43 43 H 1.08999 * 109.49508 * 58.66001 * 18 17 2 44 44 H 1.09002 * 109.59345 * 294.86240 * 19 18 17 45 45 H 1.09003 * 109.58467 * 174.43601 * 19 18 17 46 46 H 0.97001 * 120.00182 * 180.02562 * 24 23 21 47 47 H 1.09005 * 109.58696 * 293.82491 * 29 20 19 48 48 H 1.08992 * 109.58505 * 173.39431 * 29 20 19 49 49 H 1.09005 * 109.49698 * 301.33254 * 30 17 2 50 50 H 1.09000 * 109.50342 * 61.43065 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8590 1.1585 2.4115 7 6 2.6489 -0.7290 3.5876 8 1 3.6203 -1.1871 3.4017 9 6 1.6254 -1.7815 4.0754 10 8 1.7395 -1.6974 5.5060 11 6 2.1442 -0.4445 5.8518 12 6 2.0680 0.2121 7.0779 13 6 2.5531 1.4966 7.2094 14 6 3.1223 2.1428 6.1274 15 6 3.2011 1.4979 4.9060 16 6 2.7130 0.2170 4.7712 17 6 2.0400 -0.7212 -1.2493 18 6 3.5705 -0.7216 -1.2487 19 6 4.0773 -1.4747 -2.4828 20 7 3.4748 -0.8768 -3.6820 21 6 4.2607 -0.4512 -4.7195 22 1 5.2760 -0.1337 -4.5329 23 6 3.7524 -0.4281 -6.0110 24 7 4.3156 0.3318 -6.9262 25 14 2.2691 -1.4752 -6.4499 26 1 1.0301 -0.6744 -6.2801 27 1 2.3796 -1.9229 -7.8615 28 1 2.2184 -2.6608 -5.5572 29 6 2.0129 -0.7445 -3.7470 30 6 1.5292 0.0001 -2.4986 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 0.6180 -1.5192 3.7523 36 1 1.8961 -2.7763 3.7215 37 1 1.6246 -0.2852 7.9279 38 1 2.4892 1.9999 8.1629 39 1 3.5037 3.1474 6.2355 40 1 3.6445 1.9990 4.0581 41 1 1.6766 -1.7488 -1.2492 42 1 3.9345 0.3054 -1.2741 43 1 3.9338 -1.2147 -0.3471 44 1 3.7904 -2.5240 -2.4140 45 1 5.1628 -1.3936 -2.5400 46 1 3.9602 0.3483 -7.8287 47 1 1.5576 -1.7344 -3.7814 48 1 1.7363 -0.1816 -4.6384 49 1 0.4394 0.0207 -2.4868 50 1 1.9127 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997447509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:56 Heat of formation + Delta-G solvation = -19.227746 kcal Electronic energy + Delta-G solvation = -30422.173936 eV Core-core repulsion = 26415.230767 eV Total energy + Delta-G solvation = -4006.943168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.75177 -39.81605 -38.19524 -37.69413 -35.60474 -33.39596 -32.76003 -31.51162 -30.45309 -30.34003 -29.79945 -29.04577 -25.60305 -24.61338 -23.34658 -22.74355 -22.63114 -22.13325 -20.70515 -20.50438 -19.43040 -17.84940 -17.68066 -17.03656 -16.77058 -16.21119 -15.88423 -15.68228 -15.11903 -15.07490 -14.36760 -14.20997 -14.01397 -13.80772 -13.78480 -13.61812 -13.48875 -13.36501 -13.02984 -12.99412 -12.67988 -12.54037 -12.30381 -12.03197 -11.98633 -11.87520 -11.42270 -11.30332 -11.26937 -11.09331 -10.85182 -10.53711 -10.51833 -10.15589 -10.06207 -9.88948 -9.70934 -9.43911 -9.18382 -9.13919 -8.63800 -8.46982 -6.99539 -5.96498 -3.32221 0.98682 1.13269 2.35987 2.80808 2.95717 3.29396 3.45913 3.48381 3.50642 3.85063 4.14266 4.42042 4.50810 4.54017 4.70192 4.76787 4.83463 4.92521 4.95468 5.02830 5.10592 5.13677 5.15657 5.16899 5.37140 5.37394 5.41024 5.51424 5.66368 5.72761 5.76299 5.81535 5.97122 6.02270 6.03419 6.08538 6.14481 6.15939 6.23486 6.24505 6.29456 6.35015 6.44596 6.48201 6.60904 6.63164 6.67855 6.85096 6.93862 7.31803 7.94886 8.01761 8.31349 8.92745 9.70563 10.08364 11.19570 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025465 B = 0.002221 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.295452 B =12603.085411 C =12853.133459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.089 0.911 4 N -0.718 5.718 5 C 0.523 3.477 6 O -0.525 6.525 7 C -0.103 4.103 8 H 0.122 0.878 9 C 0.066 3.934 10 O -0.300 6.300 11 C 0.105 3.895 12 C -0.143 4.143 13 C -0.083 4.083 14 C -0.151 4.151 15 C -0.040 4.040 16 C -0.153 4.153 17 C -0.085 4.085 18 C -0.127 4.127 19 C 0.149 3.851 20 N -0.606 5.606 21 C -0.259 4.259 22 H 0.085 0.915 23 C 0.022 3.978 24 N -0.908 5.908 25 Si 0.884 3.116 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.271 1.271 29 C 0.126 3.874 30 C -0.127 4.127 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.062 0.938 46 H 0.262 0.738 47 H 0.024 0.976 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -3.152 26.676 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.107 0.893 4 N -0.369 5.369 5 C 0.308 3.692 6 O -0.400 6.400 7 C -0.124 4.124 8 H 0.140 0.860 9 C -0.010 4.010 10 O -0.214 6.214 11 C 0.060 3.940 12 C -0.162 4.162 13 C -0.101 4.101 14 C -0.169 4.169 15 C -0.058 4.058 16 C -0.154 4.154 17 C -0.104 4.104 18 C -0.167 4.167 19 C 0.023 3.977 20 N -0.330 5.330 21 C -0.388 4.388 22 H 0.102 0.898 23 C -0.177 4.177 24 N -0.551 5.551 25 Si 0.714 3.286 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.197 1.197 29 C 0.001 3.999 30 C -0.167 4.167 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.091 0.909 49 H 0.077 0.923 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.353 -2.437 26.643 27.498 hybrid contribution -0.703 -1.007 -0.683 1.406 sum -7.056 -3.444 25.960 27.121 Atomic orbital electron populations 1.22216 0.95457 1.01961 1.02533 1.21154 0.93734 0.97696 0.83296 0.89327 1.46128 1.67128 1.14030 1.09649 1.19994 0.78033 0.87364 0.83808 1.90728 1.49085 1.15591 1.84601 1.21583 1.01910 0.96007 0.92920 0.85980 1.23774 0.98967 0.99837 0.78407 1.86830 1.84094 1.27082 1.23422 1.19541 0.94948 0.84480 0.95060 1.20210 1.05568 0.95007 0.95385 1.20896 0.96653 0.93486 0.99049 1.21084 1.02602 1.00628 0.92609 1.20383 0.95918 0.92046 0.97444 1.20175 1.05092 0.96499 0.93625 1.21332 0.96652 0.99267 0.93164 1.22048 0.94226 1.01832 0.98561 1.20912 0.97233 0.93745 0.85834 1.44353 1.00969 1.70567 1.17079 1.18918 0.97855 1.37055 0.84943 0.89784 1.25289 0.97995 0.98762 0.95639 1.69838 1.42883 1.38536 1.03877 0.86935 0.82847 0.82171 0.76609 1.21643 1.23198 1.19659 1.21331 0.85111 0.96999 0.96489 1.22094 0.99162 1.00463 0.94979 0.92626 0.92617 0.90929 0.76682 0.90042 0.86610 0.85450 0.85136 0.85359 0.85425 0.91315 0.91851 0.92976 0.96177 0.91973 0.92774 0.95843 0.90904 0.92314 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.13 37.16 0.34 -1.48 16 2 C 0.14 1.74 2.16 -67.93 -0.15 1.59 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 4 N -0.72 -7.02 4.36 -53.81 -0.23 -7.26 16 5 C 0.52 5.89 7.03 -10.99 -0.08 5.81 16 6 O -0.52 -7.94 14.82 5.56 0.08 -7.85 16 7 C -0.10 -0.93 3.52 -91.56 -0.32 -1.25 16 8 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.07 0.50 7.54 38.05 0.29 0.79 16 10 O -0.30 -3.08 11.10 -20.13 -0.22 -3.31 16 11 C 0.10 1.13 7.04 -38.95 -0.27 0.86 16 12 C -0.14 -1.33 10.06 -39.31 -0.40 -1.73 16 13 C -0.08 -0.68 10.02 -39.68 -0.40 -1.08 16 14 C -0.15 -1.37 10.07 -39.52 -0.40 -1.77 16 15 C -0.04 -0.43 9.07 -39.72 -0.36 -0.80 16 16 C -0.15 -1.68 5.39 -104.10 -0.56 -2.25 16 17 C -0.09 -1.15 1.79 -90.58 -0.16 -1.31 16 18 C -0.13 -1.89 5.22 -26.61 -0.14 -2.03 16 19 C 0.15 2.76 6.52 -3.71 -0.02 2.73 16 20 N -0.61 -13.94 2.77 -172.31 -0.48 -14.42 16 21 C -0.26 -7.16 10.03 -15.06 -0.15 -7.31 16 22 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 23 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 24 N -0.91 -27.73 13.97 55.49 0.78 -26.96 16 25 Si 0.88 22.12 24.34 -169.99 -4.14 17.98 16 26 H -0.29 -6.95 6.62 56.52 0.37 -6.58 16 27 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.27 -6.64 6.63 56.52 0.38 -6.26 16 29 C 0.13 2.64 4.20 -3.70 -0.02 2.62 16 30 C -0.13 -2.08 5.04 -26.61 -0.13 -2.22 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 34 H 0.40 2.87 8.39 -40.82 -0.34 2.53 16 35 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 36 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.42 7.79 -52.48 -0.41 1.01 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.63 7.41 -51.93 -0.38 0.24 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.02 0.48 7.08 -51.93 -0.37 0.12 16 48 H 0.07 1.70 4.50 -51.93 -0.23 1.47 16 49 H 0.06 0.83 6.36 -51.93 -0.33 0.50 16 50 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -33.65 387.80 -9.27 -42.92 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.88 Total: 1.33 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.02 Total: -8.28 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.06 Total: -48.63 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.14 Total: -11.16 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.65 -9.27 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997447509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.694 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds