Wall clock time and date at job start Wed Apr 1 2020 03:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46858 * 2 1 4 4 N 1.46496 * 109.47316 * 120.00369 * 2 1 3 5 5 C 1.34779 * 119.99932 * 275.00325 * 4 2 1 6 6 O 1.21279 * 119.99843 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99926 * 179.97438 * 5 4 2 8 8 H 1.09000 * 110.83516 * 56.27711 * 7 5 4 9 9 C 1.54703 * 110.97380 * 292.53221 * 7 5 4 10 10 O 1.43764 * 102.79385 * 216.48063 * 9 7 5 11 11 C 1.36124 * 109.28319 * 27.57756 * 10 9 7 12 12 C 1.39288 * 129.88342 * 161.63512 * 11 10 9 13 13 C 1.37925 * 120.24668 * 179.62593 * 12 11 10 14 14 C 1.38288 * 120.35401 * 359.82666 * 13 12 11 15 15 C 1.38351 * 119.76061 * 0.20717 * 14 13 12 16 16 C 1.37737 * 119.97857 * 0.02562 * 15 14 13 17 17 C 1.52996 * 109.46822 * 240.00224 * 2 1 3 18 18 C 1.53048 * 109.46009 * 180.02562 * 17 2 1 19 19 C 1.53194 * 109.31328 * 178.60410 * 18 17 2 20 20 N 1.46922 * 108.76796 * 54.65735 * 19 18 17 21 21 C 1.36933 * 120.63434 * 126.40588 * 20 19 18 22 22 H 1.08006 * 119.99828 * 332.60417 * 21 20 19 23 23 C 1.38809 * 120.00126 * 152.60174 * 21 20 19 24 24 N 1.31615 * 119.99923 * 159.36310 * 23 21 20 25 25 Si 1.86800 * 120.00056 * 339.36509 * 23 21 20 26 26 H 1.48500 * 109.47251 * 92.90847 * 25 23 21 27 27 H 1.48498 * 109.46873 * 212.90973 * 25 23 21 28 28 H 1.48493 * 109.47337 * 332.90788 * 25 23 21 29 29 C 1.46931 * 118.73649 * 306.38106 * 20 19 18 30 30 C 1.53037 * 109.46230 * 59.97406 * 17 2 1 31 31 H 1.09003 * 109.46858 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46977 * 299.99203 * 1 2 3 33 33 H 1.08999 * 109.47296 * 59.99919 * 1 2 3 34 34 H 0.96998 * 120.00178 * 94.99922 * 4 2 1 35 35 H 1.09001 * 110.75283 * 334.81144 * 9 7 5 36 36 H 1.09005 * 110.74527 * 97.97477 * 9 7 5 37 37 H 1.08002 * 119.87794 * 359.42859 * 12 11 10 38 38 H 1.08007 * 119.82689 * 179.90916 * 13 12 11 39 39 H 1.07994 * 120.11913 * 180.19524 * 14 13 12 40 40 H 1.08003 * 120.01170 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.46605 * 299.99948 * 17 2 1 42 42 H 1.09000 * 109.49411 * 298.56811 * 18 17 2 43 43 H 1.08999 * 109.49508 * 58.66001 * 18 17 2 44 44 H 1.09002 * 109.59345 * 294.86240 * 19 18 17 45 45 H 1.09003 * 109.58467 * 174.43601 * 19 18 17 46 46 H 0.97001 * 120.00182 * 180.02562 * 24 23 21 47 47 H 1.09005 * 109.58696 * 293.82491 * 29 20 19 48 48 H 1.08992 * 109.58505 * 173.39431 * 29 20 19 49 49 H 1.09005 * 109.49698 * 301.33254 * 30 17 2 50 50 H 1.09000 * 109.50342 * 61.43065 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8590 1.1585 2.4115 7 6 2.6489 -0.7290 3.5876 8 1 3.6203 -1.1871 3.4017 9 6 1.6254 -1.7815 4.0754 10 8 1.7395 -1.6974 5.5060 11 6 2.1442 -0.4445 5.8518 12 6 2.0680 0.2121 7.0779 13 6 2.5531 1.4966 7.2094 14 6 3.1223 2.1428 6.1274 15 6 3.2011 1.4979 4.9060 16 6 2.7130 0.2170 4.7712 17 6 2.0400 -0.7212 -1.2493 18 6 3.5705 -0.7216 -1.2487 19 6 4.0773 -1.4747 -2.4828 20 7 3.4748 -0.8768 -3.6820 21 6 4.2607 -0.4512 -4.7195 22 1 5.2760 -0.1337 -4.5329 23 6 3.7524 -0.4281 -6.0110 24 7 4.3156 0.3318 -6.9262 25 14 2.2691 -1.4752 -6.4499 26 1 1.0301 -0.6744 -6.2801 27 1 2.3796 -1.9229 -7.8615 28 1 2.2184 -2.6608 -5.5572 29 6 2.0129 -0.7445 -3.7470 30 6 1.5292 0.0001 -2.4986 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 0.6180 -1.5192 3.7523 36 1 1.8961 -2.7763 3.7215 37 1 1.6246 -0.2852 7.9279 38 1 2.4892 1.9999 8.1629 39 1 3.5037 3.1474 6.2355 40 1 3.6445 1.9990 4.0581 41 1 1.6766 -1.7488 -1.2492 42 1 3.9345 0.3054 -1.2741 43 1 3.9338 -1.2147 -0.3471 44 1 3.7904 -2.5240 -2.4140 45 1 5.1628 -1.3936 -2.5400 46 1 3.9602 0.3483 -7.8287 47 1 1.5576 -1.7344 -3.7814 48 1 1.7363 -0.1816 -4.6384 49 1 0.4394 0.0207 -2.4868 50 1 1.9127 1.0203 -2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997447509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:55 Heat of formation + Delta-G solvation = -41.206676 kcal Electronic energy + Delta-G solvation = -30423.127013 eV Core-core repulsion = 26415.230767 eV Total energy + Delta-G solvation = -4007.896246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.46276 -40.78421 -39.48525 -38.36333 -36.91949 -34.60899 -33.96826 -32.94813 -31.96564 -31.10777 -30.78608 -29.92907 -27.16304 -25.46557 -24.44196 -24.23841 -23.57308 -22.99800 -21.89644 -21.43916 -20.74669 -18.87002 -18.50757 -18.37158 -17.75880 -17.34208 -16.85917 -16.60818 -16.32612 -15.92803 -15.91475 -15.35948 -15.25659 -15.11198 -14.74230 -14.62445 -14.43051 -14.34526 -14.29423 -14.12662 -13.76363 -13.67874 -13.52583 -13.43735 -13.02462 -12.74006 -12.62891 -12.58006 -12.42228 -12.19445 -12.01627 -11.91711 -11.78596 -11.64013 -11.51750 -11.30456 -11.18180 -10.91245 -10.65021 -10.09629 -9.87324 -9.17242 -8.90925 -8.16120 -5.47389 0.28970 0.40712 1.30621 1.41667 1.51182 1.51716 2.05028 2.24877 2.42467 2.79652 3.06537 3.16270 3.38020 3.51180 3.64926 3.77662 3.88945 3.90695 3.96453 4.07826 4.21399 4.35676 4.38596 4.43921 4.46185 4.48065 4.50461 4.52238 4.58227 4.58890 4.68416 4.71302 4.81911 4.86651 4.98867 5.01224 5.04833 5.09914 5.11956 5.20751 5.28745 5.33428 5.36907 5.44664 5.47141 5.55678 5.61891 5.62621 5.87817 6.13005 6.17106 6.53608 6.94233 7.21270 7.64917 8.04309 9.04066 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025465 B = 0.002221 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.295452 B =12603.085411 C =12853.133459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.059 0.941 4 N -0.704 5.704 5 C 0.525 3.475 6 O -0.569 6.569 7 C -0.097 4.097 8 H 0.144 0.856 9 C 0.067 3.933 10 O -0.311 6.311 11 C 0.087 3.913 12 C -0.151 4.151 13 C -0.080 4.080 14 C -0.157 4.157 15 C -0.063 4.063 16 C -0.174 4.174 17 C -0.074 4.074 18 C -0.117 4.117 19 C 0.142 3.858 20 N -0.622 5.622 21 C -0.248 4.248 22 H 0.046 0.954 23 C -0.042 4.042 24 N -0.961 5.961 25 Si 0.952 3.048 26 H -0.274 1.274 27 H -0.314 1.314 28 H -0.255 1.255 29 C 0.120 3.880 30 C -0.121 4.121 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.417 0.583 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.047 0.953 46 H 0.261 0.739 47 H 0.041 0.959 48 H 0.044 0.956 49 H 0.087 0.913 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 -5.668 29.359 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.077 0.923 4 N -0.357 5.357 5 C 0.311 3.689 6 O -0.447 6.447 7 C -0.118 4.118 8 H 0.161 0.839 9 C -0.008 4.008 10 O -0.225 6.225 11 C 0.042 3.958 12 C -0.169 4.169 13 C -0.098 4.098 14 C -0.175 4.175 15 C -0.081 4.081 16 C -0.175 4.175 17 C -0.093 4.093 18 C -0.156 4.156 19 C 0.018 3.982 20 N -0.347 5.347 21 C -0.378 4.378 22 H 0.063 0.937 23 C -0.236 4.236 24 N -0.607 5.607 25 Si 0.781 3.219 26 H -0.201 1.201 27 H -0.243 1.243 28 H -0.179 1.179 29 C -0.005 4.005 30 C -0.161 4.161 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.163 0.837 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.106 0.894 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.376 -5.005 29.377 30.955 hybrid contribution 0.012 -0.146 -1.425 1.433 sum -8.363 -5.151 27.952 29.627 Atomic orbital electron populations 1.22161 0.94295 1.03187 1.01980 1.20835 0.94472 0.96168 0.83417 0.92274 1.45931 1.66488 1.14716 1.08519 1.20363 0.77134 0.86832 0.84539 1.90718 1.51008 1.17681 1.85302 1.21623 1.03299 0.95838 0.91083 0.83863 1.24020 0.98448 1.01177 0.77176 1.86808 1.84147 1.26768 1.24814 1.19805 0.95529 0.84883 0.95608 1.20588 1.05289 0.95464 0.95592 1.21263 0.95391 0.93183 0.99964 1.21380 1.02380 1.01434 0.92325 1.20484 0.97080 0.92652 0.97913 1.20453 1.05462 0.96857 0.94745 1.21226 0.95347 1.00397 0.92325 1.21922 0.95363 1.00087 0.98199 1.21126 0.96551 0.95153 0.85375 1.44509 1.01827 1.71263 1.17129 1.18851 0.96923 1.35513 0.86495 0.93663 1.25980 1.01812 1.00159 0.95633 1.69987 1.45642 1.40804 1.04294 0.85821 0.79735 0.80668 0.75666 1.20098 1.24311 1.17924 1.21418 0.83757 0.97864 0.97479 1.21989 1.00874 0.98869 0.94321 0.90413 0.93695 0.91045 0.74586 0.90276 0.82831 0.83736 0.82100 0.83678 0.86785 0.88609 0.94506 0.89293 0.93799 0.93405 0.93059 0.94157 0.93769 0.89419 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.13 71.98 0.66 -2.39 16 2 C 0.16 3.36 2.16 44.99 0.10 3.45 16 3 H 0.06 1.67 7.58 -2.39 -0.02 1.66 16 4 N -0.70 -11.59 4.36 -442.53 -1.93 -13.52 16 5 C 0.53 10.94 7.03 87.66 0.62 11.56 16 6 O -0.57 -17.17 14.82 -3.03 -0.04 -17.22 16 7 C -0.10 -1.56 3.52 -11.40 -0.04 -1.60 16 8 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 9 C 0.07 0.82 7.54 72.56 0.55 1.36 16 10 O -0.31 -5.72 11.10 -94.96 -1.05 -6.78 16 11 C 0.09 1.76 7.04 22.68 0.16 1.92 16 12 C -0.15 -2.56 10.06 22.45 0.23 -2.33 16 13 C -0.08 -1.18 10.02 22.21 0.22 -0.96 16 14 C -0.16 -2.74 10.07 22.31 0.22 -2.52 16 15 C -0.06 -1.39 9.07 22.18 0.20 -1.19 16 16 C -0.17 -3.70 5.39 -19.52 -0.11 -3.81 16 17 C -0.07 -1.75 1.79 -10.77 -0.02 -1.77 16 18 C -0.12 -3.19 5.22 30.68 0.16 -3.03 16 19 C 0.14 5.03 6.52 86.36 0.56 5.60 16 20 N -0.62 -28.29 2.77 -699.07 -1.94 -30.22 16 21 C -0.25 -14.09 10.03 84.03 0.84 -13.25 16 22 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 23 C -0.04 -2.44 5.23 84.86 0.44 -2.00 16 24 N -0.96 -61.06 13.97 21.65 0.30 -60.76 16 25 Si 0.95 46.06 24.34 68.60 1.67 47.73 16 26 H -0.27 -12.49 6.62 99.48 0.66 -11.83 16 27 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 28 H -0.26 -11.50 6.63 99.48 0.66 -10.84 16 29 C 0.12 4.75 4.20 86.36 0.36 5.12 16 30 C -0.12 -3.70 5.04 30.67 0.15 -3.55 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.39 6.40 -2.39 -0.02 1.38 16 34 H 0.42 4.00 8.39 -92.71 -0.78 3.22 16 35 H 0.08 1.00 7.91 -2.39 -0.02 0.99 16 36 H 0.15 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 38 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.11 2.70 7.79 -2.91 -0.02 2.68 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.80 7.41 -2.39 -0.02 1.78 16 44 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 46 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 47 H 0.04 1.49 7.08 -2.38 -0.02 1.47 16 48 H 0.04 2.01 4.50 -2.39 -0.01 2.00 16 49 H 0.09 2.19 6.36 -2.38 -0.02 2.18 16 50 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -77.91 387.80 2.40 -75.52 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.07 Total: 14.62 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.31 Total: -9.38 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.56 Total: -104.50 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -1.10 Total: -23.99 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -77.91 2.40 -75.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997447509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.313 kcal (2) G-P(sol) polarization free energy of solvation -77.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds