Wall clock time and date at job start Wed Apr 1 2020 03:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46582 * 2 1 4 4 N 1.46502 * 109.47205 * 240.00399 * 2 1 3 5 5 C 1.34774 * 120.00300 * 84.99313 * 4 2 1 6 6 O 1.21280 * 119.99801 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99930 * 180.02562 * 5 4 2 8 8 H 1.08998 * 110.66745 * 53.24341 * 7 5 4 9 9 C 1.54707 * 110.74777 * 289.83053 * 7 5 4 10 10 C 1.51645 * 101.90445 * 267.03156 * 9 7 5 11 11 C 1.37743 * 132.17374 * 164.26539 * 10 9 7 12 12 C 1.38341 * 119.97704 * 180.39689 * 11 10 9 13 13 C 1.38283 * 119.76779 * 0.02562 * 12 11 10 14 14 C 1.37930 * 120.35005 * 359.79563 * 13 12 11 15 15 C 1.38873 * 107.03433 * 344.30388 * 10 9 7 16 16 O 1.36129 * 111.25418 * 359.39232 * 15 10 9 17 17 C 1.52994 * 109.47463 * 119.99594 * 2 1 3 18 18 C 1.53039 * 109.45741 * 60.03055 * 17 2 1 19 19 C 1.53199 * 109.31313 * 178.60153 * 18 17 2 20 20 N 1.46919 * 108.76707 * 54.65313 * 19 18 17 21 21 C 1.36937 * 120.63172 * 126.40299 * 20 19 18 22 22 H 1.07998 * 119.99790 * 331.81824 * 21 20 19 23 23 C 1.38812 * 119.99879 * 151.80882 * 21 20 19 24 24 N 1.31611 * 120.00262 * 343.08550 * 23 21 20 25 25 Si 1.86798 * 119.99828 * 163.07805 * 23 21 20 26 26 H 1.48504 * 109.47288 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47144 * 120.00494 * 25 23 21 28 28 H 1.48501 * 109.47197 * 240.00537 * 25 23 21 29 29 C 1.46925 * 118.73929 * 306.38622 * 20 19 18 30 30 C 1.53043 * 109.46497 * 299.97403 * 17 2 1 31 31 H 1.08996 * 109.46847 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46708 * 299.99945 * 1 2 3 33 33 H 1.08997 * 109.47409 * 59.99654 * 1 2 3 34 34 H 0.96997 * 119.99295 * 264.99855 * 4 2 1 35 35 H 1.09003 * 110.94130 * 25.17891 * 9 7 5 36 36 H 1.08997 * 110.94415 * 148.87533 * 9 7 5 37 37 H 1.08004 * 120.01268 * 0.41922 * 11 10 9 38 38 H 1.08008 * 120.12046 * 180.02562 * 12 11 10 39 39 H 1.08003 * 119.82922 * 179.82824 * 13 12 11 40 40 H 1.08006 * 119.87956 * 180.02562 * 14 13 12 41 41 H 1.09003 * 109.46432 * 179.97438 * 17 2 1 42 42 H 1.09003 * 109.50107 * 298.56267 * 18 17 2 43 43 H 1.09003 * 109.50062 * 58.66164 * 18 17 2 44 44 H 1.08999 * 109.59414 * 294.86122 * 19 18 17 45 45 H 1.08996 * 109.69974 * 174.50627 * 19 18 17 46 46 H 0.96999 * 120.00780 * 179.97438 * 24 23 21 47 47 H 1.09000 * 109.58935 * 293.82044 * 29 20 19 48 48 H 1.08999 * 109.58880 * 173.39606 * 29 20 19 49 49 H 1.08996 * 109.49287 * 301.33590 * 30 17 2 50 50 H 1.09003 * 109.49210 * 61.43001 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8589 1.1586 -2.4115 7 6 2.6488 -0.7287 -3.5878 8 1 2.0594 -1.6249 -3.7818 9 6 4.1500 -1.0751 -3.4468 10 6 4.8105 0.1263 -4.0948 11 6 6.1041 0.5985 -4.0649 12 6 6.4361 1.7489 -4.7578 13 6 5.4656 2.4208 -5.4781 14 6 4.1705 1.9476 -5.5124 15 6 3.8288 0.7878 -4.8209 16 8 2.6302 0.1493 -4.7260 17 6 2.0401 -0.7211 1.2492 18 6 1.5304 -2.1642 1.2486 19 6 2.0716 -2.8931 2.4826 20 7 1.7088 -2.1258 3.6818 21 6 1.0457 -2.7249 4.7194 22 1 0.3980 -3.5683 4.5310 23 6 1.2063 -2.2484 6.0132 24 7 2.2207 -1.4617 6.3036 25 14 -0.0176 -2.7233 7.3421 26 1 -1.0582 -3.6103 6.7625 27 1 0.6901 -3.4390 8.4339 28 1 -0.6575 -1.4988 7.8863 29 6 2.0713 -0.7035 3.7469 30 6 1.5304 0.0009 2.4987 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 2.2490 -1.6317 -1.1526 35 1 4.4340 -1.1571 -2.3976 36 1 4.3909 -1.9907 -3.9868 37 1 6.8589 0.0707 -3.5010 38 1 7.4498 2.1211 -4.7363 39 1 5.7231 3.3206 -6.0172 40 1 3.4186 2.4782 -6.0778 41 1 3.1301 -0.7214 1.2488 42 1 0.4407 -2.1652 1.2741 43 1 1.8742 -2.6711 0.3470 44 1 3.1565 -2.9724 2.4138 45 1 1.6354 -3.8903 2.5410 46 1 2.3327 -1.1284 7.2076 47 1 3.1562 -0.6040 3.7813 48 1 1.6329 -0.2550 4.6384 49 1 1.8742 1.0352 2.4868 50 1 0.4407 -0.0207 2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997672714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:46 Heat of formation + Delta-G solvation = -23.234071 kcal Electronic energy + Delta-G solvation = -30430.511842 eV Core-core repulsion = 26423.394946 eV Total energy + Delta-G solvation = -4007.116895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.75451 -39.70091 -38.15943 -37.37161 -35.33079 -33.43210 -32.67047 -31.31001 -30.30794 -30.06067 -29.54756 -28.70862 -25.59568 -24.87210 -23.30373 -22.69921 -22.32637 -21.91923 -20.90145 -20.32796 -18.78272 -18.15742 -17.26851 -17.09355 -16.66778 -16.06407 -15.83789 -15.32302 -14.84853 -14.69248 -14.36509 -14.29352 -13.88646 -13.79392 -13.63607 -13.51247 -13.42027 -13.11741 -13.00249 -12.67863 -12.52699 -12.19237 -12.10359 -11.93248 -11.88945 -11.68073 -11.43920 -11.27511 -11.08893 -10.94047 -10.74660 -10.48306 -10.19680 -10.12802 -10.04246 -9.86199 -9.55113 -9.44418 -9.16209 -9.06489 -8.49517 -8.37921 -6.69223 -5.81186 -3.23843 1.01444 1.12372 2.36525 2.72276 3.16858 3.35146 3.43395 3.45133 3.49359 4.03949 4.12463 4.43272 4.47739 4.56758 4.77238 4.83314 4.94423 5.00040 5.10782 5.12853 5.19116 5.29191 5.32524 5.37151 5.37732 5.49194 5.62556 5.69277 5.73715 5.81064 5.98635 6.04654 6.07099 6.10920 6.12630 6.21482 6.23690 6.29859 6.34215 6.37283 6.50408 6.59710 6.69548 6.73437 6.78098 6.88836 6.94946 7.34659 7.40282 7.64139 7.77628 8.07839 8.43034 9.19271 9.82815 10.39413 11.27237 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.002176 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.921252 B =12862.716633 C =13162.781065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.083 0.917 4 N -0.716 5.716 5 C 0.496 3.504 6 O -0.522 6.522 7 C 0.062 3.938 8 H 0.141 0.859 9 C -0.099 4.099 10 C -0.176 4.176 11 C -0.068 4.068 12 C -0.150 4.150 13 C -0.085 4.085 14 C -0.133 4.133 15 C 0.113 3.887 16 O -0.275 6.275 17 C -0.084 4.084 18 C -0.129 4.129 19 C 0.146 3.854 20 N -0.591 5.591 21 C -0.251 4.251 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.172 3.828 30 C -0.134 4.134 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.400 0.600 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.015 0.985 45 H 0.053 0.947 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.088 0.912 49 H 0.049 0.951 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 2.386 -23.027 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.101 0.899 4 N -0.369 5.369 5 C 0.280 3.720 6 O -0.397 6.397 7 C 0.002 3.998 8 H 0.159 0.841 9 C -0.136 4.136 10 C -0.176 4.176 11 C -0.086 4.086 12 C -0.168 4.168 13 C -0.104 4.104 14 C -0.152 4.152 15 C 0.068 3.932 16 O -0.188 6.188 17 C -0.103 4.103 18 C -0.168 4.168 19 C 0.019 3.981 20 N -0.314 5.314 21 C -0.381 4.381 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.215 1.215 29 C 0.046 3.954 30 C -0.174 4.174 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.235 0.765 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.106 0.894 49 H 0.068 0.932 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.294 3.320 -23.035 23.867 hybrid contribution -0.425 -0.730 0.910 1.241 sum 4.869 2.591 -22.125 22.802 Atomic orbital electron populations 1.22225 0.95220 1.02414 1.02192 1.21159 0.94338 0.96970 0.83296 0.89885 1.46179 1.66937 1.14240 1.09593 1.20781 0.78579 0.87886 0.84767 1.90738 1.48911 1.15548 1.84531 1.23358 0.98374 0.92873 0.85158 0.84144 1.21767 0.91144 0.97482 1.03201 1.20702 0.95031 0.98063 1.03841 1.20308 0.94225 0.95918 0.98163 1.21040 0.99801 0.96445 0.99488 1.20889 0.91866 0.99382 0.98213 1.20279 0.97456 0.93945 1.03516 1.19553 0.84485 0.92716 0.96440 1.86915 1.33089 1.55597 1.43154 1.21320 1.00008 0.95764 0.93244 1.22127 1.01296 0.94969 0.98414 1.20875 0.96130 0.94304 0.86789 1.44043 1.66800 1.05078 1.15506 1.19209 1.18990 1.14352 0.85563 0.91719 1.25046 0.97095 1.00451 0.97092 1.70032 1.27875 1.37570 1.19219 0.86250 0.80973 0.77805 0.81906 1.20274 1.21754 1.21547 1.20766 0.96378 0.83710 0.94572 1.22264 1.01041 0.97998 0.96071 0.92025 0.90951 0.92995 0.76453 0.88293 0.87793 0.85639 0.85412 0.85128 0.85401 0.91432 0.91630 0.93824 0.96701 0.92892 0.93676 0.96532 0.89427 0.93184 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 8.78 37.16 0.33 -1.87 16 2 C 0.15 2.00 2.40 -67.93 -0.16 1.83 16 3 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 4 N -0.72 -8.18 4.99 -53.81 -0.27 -8.45 16 5 C 0.50 6.43 7.00 -10.99 -0.08 6.36 16 6 O -0.52 -9.14 16.12 -13.48 -0.22 -9.35 16 7 C 0.06 0.62 4.11 -26.99 -0.11 0.51 16 8 H 0.14 0.92 8.14 -51.93 -0.42 0.49 16 9 C -0.10 -0.82 6.64 -26.52 -0.18 -0.99 16 10 C -0.18 -1.88 6.26 -104.10 -0.65 -2.53 16 11 C -0.07 -0.64 10.03 -39.72 -0.40 -1.04 16 12 C -0.15 -1.29 10.07 -39.53 -0.40 -1.69 16 13 C -0.09 -0.76 10.02 -39.68 -0.40 -1.16 16 14 C -0.13 -1.45 10.06 -39.30 -0.40 -1.85 16 15 C 0.11 1.40 6.84 -38.95 -0.27 1.13 16 16 O -0.28 -3.53 10.43 -39.19 -0.41 -3.94 16 17 C -0.08 -1.28 2.14 -90.58 -0.19 -1.47 16 18 C -0.13 -1.95 4.81 -26.61 -0.13 -2.07 16 19 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 20 N -0.59 -14.21 2.99 -172.33 -0.52 -14.72 16 21 C -0.25 -6.72 9.58 -15.06 -0.14 -6.87 16 22 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 23 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 24 N -0.90 -25.83 11.20 55.49 0.62 -25.21 16 25 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 C 0.17 3.94 5.30 -3.71 -0.02 3.92 16 30 C -0.13 -2.41 4.97 -26.61 -0.13 -2.54 16 31 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 32 H 0.07 1.01 6.46 -51.93 -0.34 0.67 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.40 3.56 6.85 -40.82 -0.28 3.28 16 35 H 0.10 0.76 7.91 -51.93 -0.41 0.35 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 43 H 0.04 0.51 6.46 -51.93 -0.34 0.18 16 44 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -33.23 391.24 -11.05 -44.28 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.69 Total: 2.71 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.44 Total: -7.57 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.16 Total: -48.38 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.63 Total: -13.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.23 -11.05 -44.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997672714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.045 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds