Wall clock time and date at job start Wed Apr 1 2020 03:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 110.86568 * 2 1 4 4 C 1.54698 * 110.94782 * 236.25131 * 2 1 3 5 5 O 1.43739 * 102.82335 * 267.22651 * 4 2 1 6 6 C 1.36003 * 109.31163 * 332.22043 * 5 4 2 7 7 C 1.39588 * 129.72355 * 198.51054 * 6 5 4 8 8 C 1.37468 * 120.43289 * 180.60028 * 7 6 5 9 9 C 1.39746 * 120.20286 * 0.09740 * 8 7 6 10 10 C 1.47607 * 120.26991 * 179.85060 * 9 8 7 11 11 O 1.21578 * 120.00131 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99294 * 359.97438 * 10 9 8 13 13 C 1.46503 * 119.99508 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46973 * 179.97438 * 13 12 10 15 15 C 1.53039 * 109.45064 * 64.93781 * 14 13 12 16 16 C 1.53189 * 109.31545 * 181.37793 * 15 14 13 17 17 N 1.46927 * 108.77733 * 305.36270 * 16 15 14 18 18 C 1.36936 * 120.63241 * 233.58639 * 17 16 15 19 19 H 1.08007 * 119.99801 * 151.83235 * 18 17 16 20 20 C 1.38813 * 120.00005 * 331.83410 * 18 17 16 21 21 N 1.31615 * 119.99942 * 343.07472 * 20 18 17 22 22 Si 1.86799 * 119.99873 * 163.07730 * 20 18 17 23 23 H 1.48507 * 109.47204 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47370 * 119.99983 * 22 20 18 25 25 H 1.48501 * 109.46966 * 239.99949 * 22 20 18 26 26 C 1.46931 * 118.73334 * 53.60640 * 17 16 15 27 27 C 1.53041 * 109.46051 * 184.99600 * 14 13 12 28 28 C 1.39812 * 119.46787 * 0.11904 * 9 8 7 29 29 C 1.37312 * 119.85678 * 359.40603 * 28 9 8 30 30 H 1.09004 * 109.46878 * 182.28991 * 1 2 3 31 31 H 1.09000 * 109.47483 * 302.29448 * 1 2 3 32 32 H 1.09009 * 109.47014 * 62.29761 * 1 2 3 33 33 H 1.09001 * 110.74283 * 148.89156 * 4 2 1 34 34 H 1.09005 * 110.74249 * 25.55974 * 4 2 1 35 35 H 1.08004 * 119.78233 * 0.62743 * 7 6 5 36 36 H 1.08006 * 119.89705 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00430 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47288 * 59.99777 * 13 12 10 39 39 H 1.09007 * 109.46983 * 299.99785 * 13 12 10 40 40 H 1.08995 * 109.46585 * 304.97100 * 14 13 12 41 41 H 1.08999 * 109.50013 * 61.42551 * 15 14 13 42 42 H 1.09003 * 109.49846 * 301.33075 * 15 14 13 43 43 H 1.09004 * 109.58810 * 185.57510 * 16 15 14 44 44 H 1.09003 * 109.58627 * 65.15012 * 16 15 14 45 45 H 0.96999 * 119.99981 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.58647 * 66.18352 * 26 17 16 47 47 H 1.09004 * 109.58046 * 186.46145 * 26 17 16 48 48 H 1.08997 * 109.49821 * 58.67834 * 27 14 13 49 49 H 1.09002 * 109.52643 * 298.59530 * 27 14 13 50 50 H 1.07996 * 120.07367 * 179.66090 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9182 1.0186 0.0000 4 6 2.0830 -0.8026 -1.2013 5 8 2.2604 -2.1187 -0.6511 6 6 2.4895 -2.0201 0.6858 7 6 3.0478 -2.9485 1.5661 8 6 3.1807 -2.6496 2.9013 9 6 2.7549 -1.4117 3.3903 10 6 2.8938 -1.0905 4.8243 11 8 2.5223 -0.0118 5.2444 12 7 3.4326 -1.9931 5.6678 13 6 3.5700 -1.6746 7.0912 14 6 4.2049 -2.8604 7.8202 15 6 5.6330 -3.0668 7.3102 16 6 6.2538 -4.2758 8.0171 17 7 6.1546 -4.0767 9.4694 18 6 7.2669 -4.1651 10.2633 19 1 7.3173 -3.6065 11.1864 20 6 8.3296 -4.9725 9.8817 21 7 8.1566 -5.8958 8.9599 22 14 10.0051 -4.7486 10.6767 23 1 9.9366 -3.6515 11.6753 24 1 10.4050 -6.0091 11.3521 25 1 11.0058 -4.4065 9.6342 26 6 4.8392 -3.7815 10.0538 27 6 4.2344 -2.5780 9.3240 28 6 2.1912 -0.4820 2.5114 29 6 2.0721 -0.7868 1.1779 30 1 -0.3633 -1.0269 0.0411 31 1 -0.3634 0.5490 0.8687 32 1 -0.3633 0.4778 -0.9099 33 1 3.0361 -0.3917 -1.5342 34 1 1.3622 -0.8199 -2.0188 35 1 3.3781 -3.9078 1.1956 36 1 3.6143 -3.3743 3.5746 37 1 3.7287 -2.8539 5.3327 38 1 2.5863 -1.4725 7.5149 39 1 4.2032 -0.7949 7.2072 40 1 3.6184 -3.7594 7.6310 41 1 6.2268 -2.1775 7.5213 42 1 5.6132 -3.2447 6.2349 43 1 7.3017 -4.3677 7.7316 44 1 5.7152 -5.1804 7.7347 45 1 8.8993 -6.4598 8.6930 46 1 4.1854 -4.6458 9.9375 47 1 4.9536 -3.5497 11.1127 48 1 3.2191 -2.4081 9.6822 49 1 4.8411 -1.6932 9.5167 50 1 1.8539 0.4756 2.8798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001748816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:46 Heat of formation + Delta-G solvation = -32.189443 kcal Electronic energy + Delta-G solvation = -29505.868458 eV Core-core repulsion = 25498.363229 eV Total energy + Delta-G solvation = -4007.505229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67368 -39.89174 -37.96545 -37.18021 -35.00637 -34.40691 -32.94121 -31.03030 -30.63376 -30.03588 -29.81140 -27.21296 -26.84129 -24.48872 -23.34869 -23.21660 -22.21884 -21.41689 -21.05298 -20.36534 -19.12618 -17.89057 -17.58007 -16.96618 -16.73782 -16.42808 -15.77182 -15.23898 -14.86325 -14.79713 -14.35692 -14.07270 -14.00464 -13.85783 -13.63626 -13.51628 -13.45477 -13.28630 -13.10470 -12.90350 -12.72088 -12.38325 -12.32515 -12.15139 -11.84923 -11.53950 -11.39826 -11.22629 -11.01459 -10.97755 -10.73309 -10.52587 -10.24330 -10.22635 -10.01758 -9.89163 -9.56684 -9.44183 -9.31541 -9.02524 -8.50507 -8.47700 -6.67162 -5.79676 -3.21793 0.57455 0.97322 2.63104 2.86501 3.16489 3.36558 3.44769 3.47003 3.58404 3.86799 4.10104 4.43968 4.45259 4.49420 4.63248 4.74632 4.83365 4.92125 5.00318 5.09300 5.13207 5.22095 5.24093 5.25215 5.35906 5.42402 5.46714 5.57460 5.65044 5.70754 5.81018 5.87831 5.92240 5.97034 5.99255 6.08609 6.11989 6.15394 6.28658 6.41572 6.52639 6.57046 6.67061 6.73714 6.75880 6.81541 6.98439 7.35349 7.51922 7.63739 7.79657 8.20118 8.44948 9.21260 9.84745 10.41418 11.28853 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019629 B = 0.001993 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.133664 B =14048.718189 C =14958.984532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 H 0.099 0.901 4 C 0.053 3.947 5 O -0.300 6.300 6 C 0.131 3.869 7 C -0.145 4.145 8 C -0.047 4.047 9 C -0.162 4.162 10 C 0.560 3.440 11 O -0.545 6.545 12 N -0.719 5.719 13 C 0.124 3.876 14 C -0.091 4.091 15 C -0.135 4.135 16 C 0.171 3.829 17 N -0.593 5.593 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.146 3.854 27 C -0.124 4.124 28 C -0.007 4.007 29 C -0.182 4.182 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 9.498 -19.932 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.099 4.099 3 H 0.117 0.883 4 C -0.022 4.022 5 O -0.213 6.213 6 C 0.085 3.915 7 C -0.163 4.163 8 C -0.066 4.066 9 C -0.166 4.166 10 C 0.348 3.652 11 O -0.424 6.424 12 N -0.370 5.370 13 C 0.001 3.999 14 C -0.110 4.110 15 C -0.175 4.175 16 C 0.045 3.955 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.019 3.981 27 C -0.164 4.164 28 C -0.026 4.026 29 C -0.183 4.183 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.759 9.951 -19.793 26.620 hybrid contribution 1.068 -0.281 0.145 1.114 sum -13.691 9.669 -19.649 25.826 Atomic orbital electron populations 1.21774 0.92727 1.02752 1.02571 1.21388 0.97299 1.00090 0.91107 0.88250 1.23982 1.01740 0.80100 0.96361 1.86803 1.86080 1.30110 1.18358 1.19853 0.93167 0.94453 0.84005 1.20189 1.03828 1.00354 0.91968 1.21085 0.95560 0.95354 0.94571 1.19808 1.07020 0.95967 0.93775 1.18050 0.77593 0.84134 0.85444 1.90763 1.49970 1.23400 1.78286 1.45991 1.62724 1.18953 1.09353 1.21587 1.00669 0.98878 0.78761 1.21317 0.97372 0.96345 0.95969 1.22262 0.94784 1.02203 0.98209 1.20768 1.00933 0.91144 0.82672 1.44060 1.02473 1.82673 1.02330 1.19233 0.93589 1.20594 1.04562 0.91681 1.25043 0.99597 0.95665 0.99462 1.70035 1.30436 1.20269 1.34065 0.86241 0.84491 0.77469 0.78694 1.20254 1.21757 1.21584 1.20888 0.87822 0.93439 0.95919 1.21978 0.99725 1.00864 0.93845 1.20314 0.93295 0.98918 0.90093 1.20650 1.05642 0.96901 0.95134 0.92087 0.91619 0.91708 0.90168 0.87321 0.84569 0.84412 0.76363 0.91798 0.91465 0.91277 0.92451 0.93655 0.89514 0.96519 0.93732 0.96531 0.92729 0.92918 0.92037 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.24 37.15 0.34 -0.48 16 2 C -0.08 -0.54 3.73 -90.40 -0.34 -0.88 16 3 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.05 0.32 7.54 38.05 0.29 0.61 16 5 O -0.30 -2.85 11.09 -19.75 -0.22 -3.07 16 6 C 0.13 1.33 7.05 -38.73 -0.27 1.05 16 7 C -0.14 -1.38 10.05 -39.36 -0.40 -1.77 16 8 C -0.05 -0.46 9.51 -39.30 -0.37 -0.83 16 9 C -0.16 -1.90 5.88 -104.92 -0.62 -2.51 16 10 C 0.56 7.83 7.77 -12.44 -0.10 7.74 16 11 O -0.55 -9.40 16.36 5.30 0.09 -9.31 16 12 N -0.72 -9.19 5.22 -61.32 -0.32 -9.51 16 13 C 0.12 1.75 5.06 -4.04 -0.02 1.73 16 14 C -0.09 -1.41 2.19 -90.58 -0.20 -1.60 16 15 C -0.14 -2.40 5.25 -26.61 -0.14 -2.54 16 16 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 17 N -0.59 -14.51 2.99 -172.31 -0.52 -15.03 16 18 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 19 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 20 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 21 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16 22 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 27 C -0.12 -2.06 5.36 -26.61 -0.14 -2.20 16 28 C -0.01 -0.08 9.58 -39.33 -0.38 -0.46 16 29 C -0.18 -1.75 5.61 -104.13 -0.58 -2.34 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.26 8.14 -51.92 -0.42 -0.17 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.11 0.42 7.92 -51.93 -0.41 0.01 16 35 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.14 1.07 6.40 -52.48 -0.34 0.74 16 37 H 0.40 4.35 5.68 -40.82 -0.23 4.11 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.70 7.15 -51.93 -0.37 0.33 16 43 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.14 1.50 7.66 -52.49 -0.40 1.09 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -32.39 396.82 -10.54 -42.93 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.95 Total: 1.39 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -3.20 Total: -4.67 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.21 Total: -49.81 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.13 Total: -12.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.39 -10.54 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001748816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.742 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds