Wall clock time and date at job start Wed Apr 1 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 115.55591 * 2 1 4 4 C 1.53002 * 117.49613 * 145.67113 * 2 1 3 5 5 C 1.52994 * 60.00197 * 107.48905 * 4 2 1 6 6 H 1.08997 * 117.50378 * 107.49006 * 5 4 2 7 7 C 1.50707 * 117.49608 * 252.51333 * 5 4 2 8 8 O 1.21280 * 119.99855 * 68.60759 * 7 5 4 9 9 N 1.34779 * 119.99778 * 248.60242 * 7 5 4 10 10 C 1.46496 * 119.99963 * 179.97438 * 9 7 5 11 11 H 1.09004 * 112.85071 * 336.19875 * 10 9 7 12 12 C 1.53782 * 113.61234 * 107.50550 * 10 9 7 13 13 C 1.53781 * 87.07960 * 139.98310 * 12 10 9 14 14 H 1.08992 * 113.69525 * 89.12950 * 13 12 10 15 15 N 1.46901 * 113.61211 * 220.02138 * 13 12 10 16 16 C 1.46903 * 111.00015 * 252.49288 * 15 13 12 17 17 C 1.50697 * 109.47635 * 180.02562 * 16 15 13 18 18 C 1.38303 * 119.92869 * 269.73533 * 17 16 15 19 19 C 1.38105 * 120.06662 * 179.72604 * 18 17 16 20 20 C 1.38877 * 119.92916 * 0.53759 * 19 18 17 21 21 O 1.35746 * 120.06987 * 179.75233 * 20 19 18 22 22 C 1.34834 * 117.00015 * 174.44210 * 21 20 19 23 23 H 1.07998 * 119.99972 * 5.06140 * 22 21 20 24 24 C 1.38658 * 119.99863 * 185.05653 * 22 21 20 25 25 N 1.31558 * 119.99899 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99927 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47331 * 89.99626 * 26 24 22 28 28 H 1.48498 * 109.46707 * 210.00107 * 26 24 22 29 29 H 1.48503 * 109.46852 * 329.99890 * 26 24 22 30 30 C 1.38884 * 119.86155 * 359.72878 * 20 19 18 31 31 C 1.38101 * 119.93277 * 0.02562 * 30 20 19 32 32 C 1.53776 * 113.61311 * 205.00289 * 10 9 7 33 33 H 1.09005 * 109.46541 * 325.71984 * 1 2 3 34 34 H 1.08998 * 109.47177 * 85.71931 * 1 2 3 35 35 H 1.08997 * 109.47138 * 205.72680 * 1 2 3 36 36 H 1.09003 * 117.49892 * 214.97994 * 4 2 1 37 37 H 1.08999 * 117.50084 * 359.97438 * 4 2 1 38 38 H 0.97007 * 119.99892 * 0.02562 * 9 7 5 39 39 H 1.08998 * 113.61174 * 254.52831 * 12 10 9 40 40 H 1.08993 * 113.61435 * 25.43665 * 12 10 9 41 41 H 1.00897 * 111.00020 * 128.54294 * 15 13 12 42 42 H 1.09003 * 109.47264 * 300.00524 * 16 15 13 43 43 H 1.09006 * 109.46960 * 59.99788 * 16 15 13 44 44 H 1.07997 * 119.96817 * 359.97438 * 18 17 16 45 45 H 1.07999 * 120.03640 * 180.26956 * 19 18 17 46 46 H 0.97001 * 119.99562 * 179.97438 * 25 24 22 47 47 H 1.08008 * 120.03366 * 180.02562 * 30 20 19 48 48 H 1.08001 * 119.96449 * 179.97438 * 31 30 20 49 49 H 1.09002 * 113.61824 * 334.56460 * 32 10 9 50 50 H 1.09003 * 113.61726 * 105.47220 * 32 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2365 -1.1213 -0.7646 6 1 3.1715 -0.8757 -1.2680 7 6 1.3719 -2.1412 -1.4600 8 8 0.1637 -2.0538 -1.4002 9 7 1.9414 -3.1502 -2.1485 10 6 1.1010 -4.1419 -2.8241 11 1 0.1056 -4.2215 -2.3870 12 6 1.0940 -4.0026 -4.3556 13 6 1.1319 -5.5387 -4.4169 14 1 0.1452 -6.0016 -4.4168 15 7 2.0084 -6.0640 -5.4723 16 6 1.2219 -6.6289 -6.5770 17 6 2.1528 -7.1572 -7.6378 18 6 2.5657 -6.3309 -8.6671 19 6 3.4233 -6.8104 -9.6377 20 6 3.8622 -8.1270 -9.5854 21 8 4.7011 -8.6027 -10.5406 22 6 5.1797 -9.8514 -10.3683 23 1 4.8291 -10.4551 -9.5443 24 6 6.1219 -10.3604 -11.2491 25 7 6.5485 -9.6252 -12.2532 26 14 6.7844 -12.0907 -11.0108 27 1 5.9331 -13.0536 -11.7546 28 1 8.1765 -12.1625 -11.5228 29 1 6.7704 -12.4314 -9.5655 30 6 3.4413 -8.9557 -8.5534 31 6 2.5877 -8.4689 -7.5831 32 6 1.7940 -5.4993 -3.0294 33 1 -0.3632 0.8492 0.5789 34 1 -0.3633 0.0767 -1.0248 35 1 -0.3633 -0.9258 0.4461 36 1 3.1715 -0.8748 1.2686 37 1 1.6112 -1.8579 1.2692 38 1 2.9078 -3.2202 -2.1961 39 1 0.1737 -3.5725 -4.7506 40 1 1.9900 -3.5275 -4.7549 41 1 2.6524 -6.7463 -5.1012 42 1 0.6003 -7.4420 -6.2019 43 1 0.5863 -5.8533 -7.0043 44 1 2.2203 -5.3086 -8.7098 45 1 3.7488 -6.1635 -10.4389 46 1 7.2079 -9.9812 -12.8691 47 1 3.7813 -9.9800 -8.5098 48 1 2.2598 -9.1130 -6.7806 49 1 2.8814 -5.4333 -3.0662 50 1 1.4388 -6.2775 -2.3538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021796509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:28 Heat of formation + Delta-G solvation = 5.210477 kcal Electronic energy + Delta-G solvation = -28082.261624 eV Core-core repulsion = 24076.378177 eV Total energy + Delta-G solvation = -4005.883447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67093 -39.35088 -38.93740 -37.01790 -36.63252 -34.69383 -33.04105 -32.20433 -30.17158 -29.33655 -28.80621 -26.02208 -25.85463 -25.29552 -24.08027 -22.47269 -21.94890 -21.36878 -20.65186 -20.40420 -19.55361 -17.98922 -17.54689 -17.02484 -16.70690 -15.99913 -15.58169 -15.35322 -14.84567 -14.77890 -14.59099 -14.47148 -14.08822 -13.80703 -13.65027 -13.49667 -13.39712 -12.96064 -12.73462 -12.69113 -12.67217 -12.52008 -12.32594 -12.19092 -11.87788 -11.67155 -11.51584 -11.34331 -11.20026 -10.85285 -10.74114 -10.67429 -10.63918 -10.49843 -10.48801 -10.42210 -9.80797 -9.34391 -9.28273 -8.85031 -8.41335 -8.17349 -7.19182 -6.46254 -4.05219 2.17228 2.22112 2.27470 2.81043 3.11245 3.12143 3.16988 3.38003 3.95271 4.16476 4.21596 4.24488 4.29756 4.38792 4.43097 4.62924 4.67180 4.71221 4.81426 4.97540 5.09159 5.20840 5.27256 5.29574 5.33191 5.38063 5.41880 5.44562 5.50050 5.51857 5.64502 5.71180 5.72458 5.77067 5.82354 5.83045 5.91631 5.95606 6.17364 6.21106 6.31152 6.42496 6.70553 6.89637 7.01888 7.09210 7.21336 7.26095 7.33390 7.42459 7.46475 7.82691 7.94515 7.98731 8.99361 9.69770 10.71750 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.001450 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.674100 B =19301.567102 C =19495.610677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.196 4.196 6 H 0.123 0.877 7 C 0.543 3.457 8 O -0.537 6.537 9 N -0.714 5.714 10 C 0.122 3.878 11 H 0.113 0.887 12 C -0.136 4.136 13 C 0.061 3.939 14 H 0.074 0.926 15 N -0.670 5.670 16 C 0.118 3.882 17 C -0.186 4.186 18 C -0.052 4.052 19 C -0.195 4.195 20 C 0.156 3.844 21 O -0.178 6.178 22 C -0.392 4.392 23 H 0.092 0.908 24 C 0.039 3.961 25 N -0.862 5.862 26 Si 0.941 3.059 27 H -0.273 1.273 28 H -0.277 1.277 29 H -0.268 1.268 30 C -0.235 4.235 31 C -0.066 4.066 32 C -0.149 4.149 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.343 0.657 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 13.506 23.921 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 H 0.129 0.871 4 C -0.189 4.189 5 C -0.217 4.217 6 H 0.141 0.859 7 C 0.330 3.670 8 O -0.413 6.413 9 N -0.364 5.364 10 C 0.017 3.983 11 H 0.131 0.869 12 C -0.176 4.176 13 C -0.049 4.049 14 H 0.092 0.908 15 N -0.302 5.302 16 C -0.011 4.011 17 C -0.187 4.187 18 C -0.071 4.071 19 C -0.214 4.214 20 C 0.102 3.898 21 O -0.082 6.082 22 C -0.469 4.469 23 H 0.109 0.891 24 C -0.165 4.165 25 N -0.497 5.497 26 Si 0.765 3.235 27 H -0.199 1.199 28 H -0.202 1.202 29 H -0.192 1.192 30 C -0.254 4.254 31 C -0.085 4.085 32 C -0.188 4.188 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.237 0.763 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.162 0.838 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.120 0.880 49 H 0.112 0.888 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.332 14.230 23.240 28.805 hybrid contribution 0.728 -1.869 0.347 2.035 sum -8.604 12.362 23.587 27.986 Atomic orbital electron populations 1.21364 0.91423 1.01410 1.02672 1.22378 0.96660 0.93562 1.01142 0.87127 1.23083 1.03127 1.01983 0.90712 1.22318 1.02230 1.01350 0.95852 0.85914 1.19711 0.88151 0.81209 0.77922 1.90702 1.14582 1.74574 1.61491 1.45953 1.10251 1.27333 1.52913 1.22372 0.95774 0.87451 0.92743 0.86928 1.23556 1.03099 0.96290 0.94615 1.22785 0.95989 0.96113 0.90055 0.90809 1.60691 1.18674 1.41727 1.09092 1.20679 0.93517 0.96691 0.90166 1.19117 1.06057 0.94565 0.98970 1.20469 0.95550 0.97958 0.93085 1.20232 1.04662 0.93979 1.02511 1.19405 0.89992 0.92325 0.88084 1.83980 1.52975 1.31779 1.39420 1.21322 1.23022 0.88203 1.14310 0.89101 1.25287 0.95943 1.00005 0.95255 1.70041 1.29073 1.36705 1.13883 0.85718 0.78407 0.80430 0.78905 1.19886 1.20237 1.19229 1.21118 1.04904 1.01177 0.98214 1.20583 0.96222 0.94450 0.97207 1.23628 1.01406 0.96778 0.96989 0.93263 0.91320 0.91806 0.87818 0.88263 0.76347 0.91434 0.88826 0.83768 0.95393 0.91128 0.87077 0.86580 0.92021 0.85666 0.87960 0.88767 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 8.43 37.16 0.31 -0.60 16 2 C -0.12 -0.78 6.41 -90.62 -0.58 -1.37 16 3 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -0.86 9.88 -26.73 -0.26 -1.12 16 5 C -0.20 -1.31 6.19 -91.77 -0.57 -1.87 16 6 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 7 C 0.54 4.99 7.59 -10.98 -0.08 4.91 16 8 O -0.54 -6.65 12.70 5.56 0.07 -6.58 16 9 N -0.71 -5.39 5.35 -53.02 -0.28 -5.67 16 10 C 0.12 1.01 4.24 -67.12 -0.28 0.72 16 11 H 0.11 1.07 7.47 -51.93 -0.39 0.68 16 12 C -0.14 -1.26 7.68 -25.92 -0.20 -1.46 16 13 C 0.06 0.56 4.14 -66.90 -0.28 0.28 16 14 H 0.07 0.66 7.86 -51.93 -0.41 0.26 16 15 N -0.67 -7.66 6.55 -107.13 -0.70 -8.36 16 16 C 0.12 1.52 5.65 -4.98 -0.03 1.49 16 17 C -0.19 -3.07 5.40 -104.58 -0.56 -3.63 16 18 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 19 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 20 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 21 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 22 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 23 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 24 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 25 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 26 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 29 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 30 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 31 C -0.07 -1.17 9.69 -39.61 -0.38 -1.55 16 32 C -0.15 -1.11 7.40 -25.92 -0.19 -1.30 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.67 7.26 -51.93 -0.38 0.30 16 35 H 0.06 0.60 7.01 -51.93 -0.36 0.24 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.40 2.18 8.73 -40.82 -0.36 1.83 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.34 3.89 8.54 -39.29 -0.34 3.55 16 42 H 0.03 0.34 8.07 -51.93 -0.42 -0.08 16 43 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.13 2.69 5.64 -52.48 -0.30 2.40 16 48 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 49 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 411.60 15.07 6.20 6.20 Total: -1.00 -31.86 411.60 -11.13 -42.99 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.84 Total: 8.44 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -4.31 Total: -22.84 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.23 Total: -38.47 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.86 -11.13 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021796509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.196 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds