Wall clock time and date at job start Wed Apr 1 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 115.55591 * 2 1 4 4 C 1.53002 * 117.49613 * 145.67113 * 2 1 3 5 5 C 1.52994 * 60.00197 * 107.48905 * 4 2 1 6 6 H 1.08997 * 117.50378 * 107.49006 * 5 4 2 7 7 C 1.50707 * 117.49608 * 252.51333 * 5 4 2 8 8 O 1.21280 * 119.99855 * 68.60759 * 7 5 4 9 9 N 1.34779 * 119.99778 * 248.60242 * 7 5 4 10 10 C 1.46496 * 119.99963 * 179.97438 * 9 7 5 11 11 H 1.09004 * 112.85071 * 336.19875 * 10 9 7 12 12 C 1.53782 * 113.61234 * 107.50550 * 10 9 7 13 13 C 1.53781 * 87.07960 * 139.98310 * 12 10 9 14 14 H 1.08992 * 113.69525 * 89.12950 * 13 12 10 15 15 N 1.46901 * 113.61211 * 220.02138 * 13 12 10 16 16 C 1.46903 * 111.00015 * 252.49288 * 15 13 12 17 17 C 1.50697 * 109.47635 * 180.02562 * 16 15 13 18 18 C 1.38303 * 119.92869 * 269.73533 * 17 16 15 19 19 C 1.38105 * 120.06662 * 179.72604 * 18 17 16 20 20 C 1.38877 * 119.92916 * 0.53759 * 19 18 17 21 21 O 1.35746 * 120.06987 * 179.75233 * 20 19 18 22 22 C 1.34834 * 117.00015 * 174.44210 * 21 20 19 23 23 H 1.07998 * 119.99972 * 5.06140 * 22 21 20 24 24 C 1.38658 * 119.99863 * 185.05653 * 22 21 20 25 25 N 1.31558 * 119.99899 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99927 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47331 * 89.99626 * 26 24 22 28 28 H 1.48498 * 109.46707 * 210.00107 * 26 24 22 29 29 H 1.48503 * 109.46852 * 329.99890 * 26 24 22 30 30 C 1.38884 * 119.86155 * 359.72878 * 20 19 18 31 31 C 1.38101 * 119.93277 * 0.02562 * 30 20 19 32 32 C 1.53776 * 113.61311 * 205.00289 * 10 9 7 33 33 H 1.09005 * 109.46541 * 325.71984 * 1 2 3 34 34 H 1.08998 * 109.47177 * 85.71931 * 1 2 3 35 35 H 1.08997 * 109.47138 * 205.72680 * 1 2 3 36 36 H 1.09003 * 117.49892 * 214.97994 * 4 2 1 37 37 H 1.08999 * 117.50084 * 359.97438 * 4 2 1 38 38 H 0.97007 * 119.99892 * 0.02562 * 9 7 5 39 39 H 1.08998 * 113.61174 * 254.52831 * 12 10 9 40 40 H 1.08993 * 113.61435 * 25.43665 * 12 10 9 41 41 H 1.00897 * 111.00020 * 128.54294 * 15 13 12 42 42 H 1.09003 * 109.47264 * 300.00524 * 16 15 13 43 43 H 1.09006 * 109.46960 * 59.99788 * 16 15 13 44 44 H 1.07997 * 119.96817 * 359.97438 * 18 17 16 45 45 H 1.07999 * 120.03640 * 180.26956 * 19 18 17 46 46 H 0.97001 * 119.99562 * 179.97438 * 25 24 22 47 47 H 1.08008 * 120.03366 * 180.02562 * 30 20 19 48 48 H 1.08001 * 119.96449 * 179.97438 * 31 30 20 49 49 H 1.09002 * 113.61824 * 334.56460 * 32 10 9 50 50 H 1.09003 * 113.61726 * 105.47220 * 32 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2365 -1.1213 -0.7646 6 1 3.1715 -0.8757 -1.2680 7 6 1.3719 -2.1412 -1.4600 8 8 0.1637 -2.0538 -1.4002 9 7 1.9414 -3.1502 -2.1485 10 6 1.1010 -4.1419 -2.8241 11 1 0.1056 -4.2215 -2.3870 12 6 1.0940 -4.0026 -4.3556 13 6 1.1319 -5.5387 -4.4169 14 1 0.1452 -6.0016 -4.4168 15 7 2.0084 -6.0640 -5.4723 16 6 1.2219 -6.6289 -6.5770 17 6 2.1528 -7.1572 -7.6378 18 6 2.5657 -6.3309 -8.6671 19 6 3.4233 -6.8104 -9.6377 20 6 3.8622 -8.1270 -9.5854 21 8 4.7011 -8.6027 -10.5406 22 6 5.1797 -9.8514 -10.3683 23 1 4.8291 -10.4551 -9.5443 24 6 6.1219 -10.3604 -11.2491 25 7 6.5485 -9.6252 -12.2532 26 14 6.7844 -12.0907 -11.0108 27 1 5.9331 -13.0536 -11.7546 28 1 8.1765 -12.1625 -11.5228 29 1 6.7704 -12.4314 -9.5655 30 6 3.4413 -8.9557 -8.5534 31 6 2.5877 -8.4689 -7.5831 32 6 1.7940 -5.4993 -3.0294 33 1 -0.3632 0.8492 0.5789 34 1 -0.3633 0.0767 -1.0248 35 1 -0.3633 -0.9258 0.4461 36 1 3.1715 -0.8748 1.2686 37 1 1.6112 -1.8579 1.2692 38 1 2.9078 -3.2202 -2.1961 39 1 0.1737 -3.5725 -4.7506 40 1 1.9900 -3.5275 -4.7549 41 1 2.6524 -6.7463 -5.1012 42 1 0.6003 -7.4420 -6.2019 43 1 0.5863 -5.8533 -7.0043 44 1 2.2203 -5.3086 -8.7098 45 1 3.7488 -6.1635 -10.4389 46 1 7.2079 -9.9812 -12.8691 47 1 3.7813 -9.9800 -8.5098 48 1 2.2598 -9.1130 -6.7806 49 1 2.8814 -5.4333 -3.0662 50 1 1.4388 -6.2775 -2.3538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021796509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:27 Heat of formation + Delta-G solvation = -15.223057 kcal Electronic energy + Delta-G solvation = -28083.147688 eV Core-core repulsion = 24076.378177 eV Total energy + Delta-G solvation = -4006.769512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34918 -40.78266 -39.91936 -38.48094 -37.40310 -35.68304 -34.34866 -33.74457 -31.76691 -30.67471 -29.47312 -27.55222 -26.68860 -26.34258 -25.18034 -23.60079 -23.16903 -21.98663 -21.89935 -21.25005 -20.27069 -19.82253 -18.83818 -18.15961 -17.43447 -16.79213 -16.53701 -16.41117 -16.23176 -15.97176 -15.67597 -15.54137 -15.39471 -15.28005 -15.10692 -14.54381 -14.35931 -14.06686 -13.98729 -13.66684 -13.56753 -13.35007 -13.33767 -13.15374 -13.05466 -12.97914 -12.57192 -12.38476 -12.33540 -12.23103 -12.11831 -12.08883 -11.64470 -11.50588 -11.18793 -11.15875 -11.02872 -10.78532 -10.50491 -9.96982 -9.75992 -9.31308 -8.88546 -8.46294 -6.14622 0.62340 0.69427 1.35436 1.44693 1.51763 1.53031 2.18296 2.20174 2.80678 2.86806 3.13173 3.51656 3.54041 3.56976 3.62299 3.69333 3.86696 3.92451 3.97469 4.02559 4.07443 4.13933 4.22766 4.26105 4.47156 4.48796 4.58108 4.63999 4.76111 4.80751 4.82535 4.84674 4.86874 4.90613 4.97748 5.04298 5.06026 5.10844 5.11820 5.16414 5.17895 5.22981 5.33374 5.52065 5.59538 5.64814 5.73064 5.83504 6.03918 6.17318 6.27893 6.51863 6.61154 6.98424 7.30419 7.79921 8.77009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.001450 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.674100 B =19301.567102 C =19495.610677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.129 4.129 3 H 0.131 0.869 4 C -0.138 4.138 5 C -0.200 4.200 6 H 0.146 0.854 7 C 0.535 3.465 8 O -0.576 6.576 9 N -0.705 5.705 10 C 0.123 3.877 11 H 0.099 0.901 12 C -0.136 4.136 13 C 0.063 3.937 14 H 0.081 0.919 15 N -0.677 5.677 16 C 0.122 3.878 17 C -0.157 4.157 18 C -0.048 4.048 19 C -0.207 4.207 20 C 0.113 3.887 21 O -0.235 6.235 22 C -0.414 4.414 23 H 0.102 0.898 24 C -0.023 4.023 25 N -0.921 5.921 26 Si 1.019 2.981 27 H -0.264 1.264 28 H -0.272 1.272 29 H -0.252 1.252 30 C -0.243 4.243 31 C -0.061 4.061 32 C -0.133 4.133 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.346 0.654 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.141 0.859 45 H 0.109 0.891 46 H 0.272 0.728 47 H 0.118 0.882 48 H 0.140 0.860 49 H 0.101 0.899 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 13.480 27.215 31.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 H 0.149 0.851 4 C -0.176 4.176 5 C -0.221 4.221 6 H 0.164 0.836 7 C 0.323 3.677 8 O -0.456 6.456 9 N -0.356 5.356 10 C 0.018 3.982 11 H 0.117 0.883 12 C -0.176 4.176 13 C -0.047 4.047 14 H 0.099 0.901 15 N -0.309 5.309 16 C -0.007 4.007 17 C -0.158 4.158 18 C -0.067 4.067 19 C -0.226 4.226 20 C 0.063 3.937 21 O -0.142 6.142 22 C -0.490 4.490 23 H 0.119 0.881 24 C -0.221 4.221 25 N -0.560 5.560 26 Si 0.838 3.162 27 H -0.189 1.189 28 H -0.196 1.196 29 H -0.176 1.176 30 C -0.262 4.262 31 C -0.079 4.079 32 C -0.172 4.172 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.166 0.834 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.159 0.841 45 H 0.127 0.873 46 H 0.081 0.919 47 H 0.136 0.864 48 H 0.158 0.842 49 H 0.120 0.880 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.810 14.223 26.580 31.702 hybrid contribution 0.600 -1.623 -0.459 1.790 sum -9.210 12.600 26.120 30.428 Atomic orbital electron populations 1.21266 0.93046 1.00961 1.01206 1.22478 0.95547 0.94797 1.01927 0.85142 1.23145 1.03690 1.00792 0.89928 1.22397 1.02556 1.00631 0.96538 0.83612 1.20230 0.87988 0.81691 0.77765 1.90692 1.16368 1.75568 1.62953 1.45893 1.10858 1.26699 1.52126 1.22240 0.95616 0.88323 0.92066 0.88289 1.23522 1.02306 0.96501 0.95222 1.22801 0.96139 0.95550 0.90213 0.90083 1.60593 1.19046 1.41652 1.09560 1.20659 0.92755 0.97638 0.89605 1.19627 1.03903 0.93701 0.98583 1.20832 0.94173 0.99523 0.92152 1.20461 1.05542 0.93136 1.03507 1.19950 0.90788 0.93958 0.89026 1.83942 1.55650 1.32510 1.42063 1.21827 1.23553 0.88631 1.14962 0.88056 1.26595 0.95953 1.04855 0.94657 1.70192 1.30777 1.39357 1.15626 0.84586 0.77672 0.74293 0.79649 1.18852 1.19637 1.17567 1.21236 1.05722 1.00709 0.98523 1.20951 0.94664 0.95465 0.96833 1.23534 1.01618 0.96190 0.95863 0.91934 0.93587 0.93686 0.85298 0.89348 0.74914 0.92342 0.89512 0.83438 0.93493 0.90294 0.84124 0.87252 0.91891 0.86416 0.84213 0.88015 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 8.43 71.98 0.61 -1.14 16 2 C -0.13 -1.49 6.41 -10.79 -0.07 -1.56 16 3 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.14 -1.25 9.88 30.59 0.30 -0.94 16 5 C -0.20 -2.26 6.19 -11.54 -0.07 -2.33 16 6 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 7 C 0.54 9.29 7.59 87.66 0.67 9.95 16 8 O -0.58 -14.39 12.70 -3.03 -0.04 -14.43 16 9 N -0.71 -9.36 5.35 -440.03 -2.36 -11.71 16 10 C 0.12 1.81 4.24 45.52 0.19 2.00 16 11 H 0.10 1.79 7.47 -2.39 -0.02 1.77 16 12 C -0.14 -2.23 7.68 31.12 0.24 -1.99 16 13 C 0.06 0.94 4.14 45.44 0.19 1.13 16 14 H 0.08 1.15 7.86 -2.39 -0.02 1.13 16 15 N -0.68 -12.79 6.55 -492.84 -3.23 -16.01 16 16 C 0.12 2.60 5.65 85.56 0.48 3.09 16 17 C -0.16 -4.67 5.40 -19.84 -0.11 -4.77 16 18 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 19 C -0.21 -8.91 9.99 22.39 0.22 -8.68 16 20 C 0.11 5.65 6.65 22.58 0.15 5.80 16 21 O -0.23 -14.26 9.76 -22.73 -0.22 -14.48 16 22 C -0.41 -24.12 9.49 67.92 0.64 -23.48 16 23 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 24 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 25 N -0.92 -56.74 13.67 21.61 0.30 -56.45 16 26 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 27 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 30 C -0.24 -10.37 9.17 22.39 0.21 -10.17 16 31 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 32 C -0.13 -1.54 7.40 31.12 0.23 -1.31 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.05 0.94 7.26 -2.39 -0.02 0.92 16 35 H 0.04 0.88 7.01 -2.39 -0.02 0.86 16 36 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 1.01 8.05 -2.39 -0.02 0.99 16 38 H 0.41 3.44 8.73 -92.70 -0.81 2.63 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.35 6.37 8.54 -89.70 -0.77 5.61 16 42 H 0.05 0.88 8.07 -2.39 -0.02 0.86 16 43 H 0.08 1.64 8.08 -2.38 -0.02 1.62 16 44 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 45 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 46 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 48 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 49 H 0.10 1.07 8.12 -2.39 -0.02 1.05 16 50 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -75.38 411.60 0.65 -74.73 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.61 Total: 32.11 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.78 Total: -38.43 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -5.29 Total: -84.17 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.26 Total: -28.92 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -75.38 0.65 -74.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021796509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.504 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds