Wall clock time and date at job start Wed Apr 1 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 116.99921 * 2 1 4 4 C 1.38756 * 120.05291 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.93882 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05782 * 359.74621 * 5 4 3 7 7 C 1.38245 * 120.11056 * 0.50727 * 6 5 4 8 8 C 1.50703 * 119.97301 * 179.76418 * 7 6 5 9 9 H 1.08999 * 109.47071 * 179.72159 * 8 7 6 10 10 C 1.53005 * 109.46829 * 59.72641 * 8 7 6 11 11 C 1.50700 * 109.47233 * 299.72668 * 8 7 6 12 12 O 1.21279 * 120.00063 * 9.06163 * 11 8 7 13 13 N 1.34772 * 120.00014 * 189.06493 * 11 8 7 14 14 C 1.47170 * 120.71164 * 4.02273 * 13 11 8 15 15 C 1.55889 * 107.95245 * 132.45293 * 14 13 11 16 16 H 1.09000 * 112.45322 * 181.85135 * 15 14 13 17 17 C 1.54543 * 108.44254 * 307.13158 * 15 14 13 18 18 C 1.53734 * 104.95571 * 88.28881 * 17 15 14 19 19 C 1.54550 * 104.95089 * 359.97438 * 18 17 15 20 20 H 1.08999 * 112.18544 * 146.28372 * 19 18 17 21 21 C 1.47167 * 120.71195 * 184.04519 * 13 11 8 22 22 N 1.48304 * 106.17671 * 58.78151 * 15 14 13 23 23 C 1.36939 * 128.07495 * 106.44290 * 22 15 14 24 24 H 1.07999 * 119.99610 * 164.51986 * 23 22 15 25 25 C 1.38813 * 120.00232 * 344.52591 * 23 22 15 26 26 N 1.31619 * 119.99837 * 350.21542 * 25 23 22 27 27 Si 1.86791 * 119.99977 * 170.21480 * 25 23 22 28 28 H 1.48504 * 109.46987 * 179.97438 * 27 25 23 29 29 H 1.48499 * 109.47614 * 299.99704 * 27 25 23 30 30 H 1.48497 * 109.47234 * 60.00255 * 27 25 23 31 31 C 1.38164 * 120.05906 * 359.49315 * 7 6 5 32 32 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47304 * 299.99685 * 1 2 3 34 34 H 1.08998 * 109.46875 * 60.00180 * 1 2 3 35 35 H 1.07997 * 120.02985 * 359.95588 * 4 3 2 36 36 H 1.08001 * 119.96925 * 180.02562 * 5 4 3 37 37 H 1.08002 * 119.94728 * 180.26954 * 6 5 4 38 38 H 1.09002 * 109.46646 * 293.16050 * 10 8 7 39 39 H 1.08991 * 109.47245 * 53.15768 * 10 8 7 40 40 H 1.08999 * 109.46639 * 173.16209 * 10 8 7 41 41 H 1.09001 * 109.74824 * 252.41739 * 14 13 11 42 42 H 1.08999 * 109.74901 * 13.09136 * 14 13 11 43 43 H 1.08995 * 110.36517 * 207.00501 * 17 15 14 44 44 H 1.09003 * 110.36593 * 329.21160 * 17 15 14 45 45 H 1.08996 * 110.42239 * 241.07016 * 18 17 15 46 46 H 1.09002 * 110.21019 * 118.81528 * 18 17 15 47 47 H 1.08997 * 109.75196 * 107.58732 * 21 13 11 48 48 H 1.09003 * 109.78511 * 346.87455 * 21 13 11 49 49 H 0.97001 * 119.99935 * 180.02562 * 26 25 23 50 50 H 1.07994 * 120.03311 * 180.23261 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0559 2.5171 0.0006 8 6 5.5608 2.5982 0.0010 9 1 5.9789 1.5916 0.0009 10 6 6.0309 3.3455 1.2506 11 6 6.0245 3.3349 -1.2291 12 8 5.2178 3.8945 -1.9411 13 7 7.3358 3.3719 -1.5382 14 6 8.3185 2.6258 -0.7359 15 6 9.2462 1.8457 -1.7161 16 1 9.9862 1.2386 -1.1946 17 6 8.3598 1.0146 -2.6711 18 6 8.0507 1.9567 -3.8460 19 6 8.7763 3.2767 -3.5002 20 1 9.1476 3.7873 -4.3888 21 6 7.8159 4.1595 -2.6849 22 7 9.8737 2.8656 -2.5909 23 6 11.1661 3.3179 -2.5681 24 1 11.5592 3.8717 -3.4079 25 6 11.9708 3.0646 -1.4658 26 7 11.4448 2.5631 -0.3684 27 14 13.8000 3.4353 -1.5398 28 1 14.4303 3.0786 -0.2433 29 1 14.4227 2.6403 -2.6286 30 1 14.0015 4.8823 -1.8060 31 6 3.4312 1.2848 0.0000 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 0.2128 2.3203 0.0002 36 1 1.3339 4.5114 0.0019 37 1 3.7922 4.6381 0.0112 38 1 5.7144 4.3869 1.1916 39 1 5.5950 2.8830 2.1361 40 1 7.1180 3.2992 1.3142 41 1 8.9074 3.3199 -0.1362 42 1 7.8025 1.9216 -0.0832 43 1 8.9016 0.1374 -3.0244 44 1 7.4395 0.7147 -2.1698 45 1 6.9768 2.1245 -3.9266 46 1 8.4413 1.5409 -4.7748 47 1 8.3420 5.0453 -2.3290 48 1 6.9719 4.4576 -3.3070 49 1 12.0070 2.3864 0.4021 50 1 4.0207 0.3799 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029599978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:12 Heat of formation + Delta-G solvation = -8.606817 kcal Electronic energy + Delta-G solvation = -31502.285681 eV Core-core repulsion = 27495.803071 eV Total energy + Delta-G solvation = -4006.482610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.52948 -39.82309 -38.27921 -37.09035 -34.10687 -33.43307 -32.38859 -30.80361 -30.42796 -29.27176 -28.96817 -27.42714 -26.30623 -24.52656 -23.83718 -23.44476 -22.54698 -21.38393 -19.69814 -19.48748 -18.60713 -17.63039 -17.10702 -16.26828 -16.06842 -15.85383 -15.80019 -15.39458 -15.09385 -14.67673 -14.33563 -13.99067 -13.69804 -13.55687 -13.40022 -13.12774 -12.98459 -12.73339 -12.65345 -12.42887 -12.15174 -11.90329 -11.76805 -11.74192 -11.51586 -11.39662 -11.23933 -11.07616 -11.01795 -10.88103 -10.79065 -10.67997 -10.36461 -10.08240 -9.85048 -9.61785 -9.56432 -9.27030 -8.83254 -8.69810 -8.13290 -8.02707 -6.84398 -5.88031 -3.21601 1.33062 1.53315 3.13299 3.15038 3.34610 3.40040 3.40546 3.57582 3.90726 4.40120 4.64889 4.74134 4.92507 4.93923 4.96399 5.06887 5.13022 5.23576 5.26385 5.30408 5.33946 5.44415 5.53145 5.63935 5.69538 5.72552 5.79150 5.87555 5.88048 5.92539 6.04483 6.04679 6.14397 6.23275 6.28750 6.32143 6.40423 6.50143 6.55830 6.60428 6.66485 6.70391 6.74105 6.78539 6.89392 6.98774 7.25111 7.35831 7.45436 7.64004 8.09176 8.13671 8.72772 9.03225 9.65173 10.42534 11.25587 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002757 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.441933 B =10153.247206 C =10227.366250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.211 4.211 5 C -0.086 4.086 6 C -0.113 4.113 7 C -0.022 4.022 8 C -0.072 4.072 9 H 0.102 0.898 10 C -0.141 4.141 11 C 0.514 3.486 12 O -0.556 6.556 13 N -0.589 5.589 14 C 0.102 3.898 15 C 0.168 3.832 16 H 0.119 0.881 17 C -0.134 4.134 18 C -0.123 4.123 19 C 0.134 3.866 20 H 0.076 0.924 21 C 0.104 3.896 22 N -0.585 5.585 23 C -0.224 4.224 24 H 0.075 0.925 25 C -0.003 4.003 26 N -0.915 5.915 27 Si 0.912 3.088 28 H -0.290 1.290 29 H -0.286 1.286 30 H -0.285 1.285 31 C -0.144 4.144 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.255 0.745 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.539 -2.725 3.128 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.230 4.230 5 C -0.104 4.104 6 C -0.132 4.132 7 C -0.022 4.022 8 C -0.093 4.093 9 H 0.120 0.880 10 C -0.198 4.198 11 C 0.301 3.699 12 O -0.436 6.436 13 N -0.320 5.320 14 C -0.022 4.022 15 C 0.060 3.940 16 H 0.137 0.863 17 C -0.173 4.173 18 C -0.162 4.162 19 C 0.025 3.975 20 H 0.094 0.906 21 C -0.021 4.021 22 N -0.306 5.306 23 C -0.352 4.352 24 H 0.093 0.907 25 C -0.200 4.200 26 N -0.562 5.562 27 Si 0.742 3.258 28 H -0.216 1.216 29 H -0.212 1.212 30 H -0.212 1.212 31 C -0.163 4.163 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.587 -2.597 2.900 18.013 hybrid contribution 0.690 0.331 0.025 0.766 sum -16.897 -2.266 2.925 17.297 Atomic orbital electron populations 1.23005 0.78752 1.03641 1.01201 1.86058 1.21079 1.27141 1.89078 1.18880 0.92130 0.83994 0.97584 1.21149 0.99606 0.92501 1.09721 1.20871 0.94577 0.96782 0.98192 1.20860 0.93276 0.98293 1.00727 1.19175 0.93852 0.92389 0.96802 1.20275 0.92046 1.01716 0.95291 0.87992 1.21813 1.02616 1.00192 0.95199 1.20228 0.82328 0.81139 0.86178 1.90640 1.53134 1.47649 1.52136 1.48147 1.05861 1.47785 1.30175 1.23044 0.89721 0.95440 0.93970 1.22291 0.91909 0.89643 0.90172 0.86309 1.22502 0.99042 0.98240 0.97552 1.22361 0.99011 0.96864 0.97971 1.21967 0.88687 0.93418 0.93399 0.90621 1.22304 0.97556 0.94256 0.87940 1.45173 1.06022 1.42829 1.36586 1.18966 0.85121 1.30840 1.00291 0.90700 1.24798 0.98552 1.01621 0.95022 1.69807 1.34169 1.49482 1.02707 0.86206 0.84839 0.78002 0.76718 1.21613 1.21223 1.21158 1.20253 0.91358 0.97962 1.06710 0.88464 0.92841 0.92796 0.85916 0.86033 0.85941 0.92144 0.91528 0.90597 0.89762 0.92204 0.92739 0.93194 0.92624 0.92783 0.92054 0.90783 0.93497 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.86 10.50 -19.43 -0.20 -4.06 16 3 C 0.12 1.56 6.69 -39.21 -0.26 1.30 16 4 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 5 C -0.09 -1.06 10.04 -39.61 -0.40 -1.46 16 6 C -0.11 -1.61 7.91 -39.56 -0.31 -1.92 16 7 C -0.02 -0.31 4.48 -104.65 -0.47 -0.78 16 8 C -0.07 -1.05 2.06 -92.92 -0.19 -1.24 16 9 H 0.10 1.40 6.65 -51.93 -0.35 1.05 16 10 C -0.14 -1.83 8.63 37.16 0.32 -1.51 16 11 C 0.51 9.16 6.89 -10.99 -0.08 9.08 16 12 O -0.56 -11.27 14.29 5.56 0.08 -11.19 16 13 N -0.59 -10.91 2.29 -170.29 -0.39 -11.30 16 14 C 0.10 1.95 4.49 -2.13 -0.01 1.94 16 15 C 0.17 3.56 3.21 -64.58 -0.21 3.35 16 16 H 0.12 2.86 6.38 -51.93 -0.33 2.52 16 17 C -0.13 -2.49 6.19 -25.54 -0.16 -2.65 16 18 C -0.12 -2.25 6.18 -25.54 -0.16 -2.40 16 19 C 0.13 2.66 4.27 -65.67 -0.28 2.38 16 20 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 21 C 0.10 2.01 5.94 -3.24 -0.02 1.99 16 22 N -0.59 -13.55 2.78 -151.42 -0.42 -13.97 16 23 C -0.22 -5.75 10.37 -15.06 -0.16 -5.90 16 24 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 25 C 0.00 -0.08 5.41 -17.43 -0.09 -0.17 16 26 N -0.92 -23.95 10.40 55.49 0.58 -23.38 16 27 Si 0.91 20.82 29.56 -169.99 -5.03 15.79 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 31 C -0.14 -2.01 9.61 -39.43 -0.38 -2.39 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 34 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 35 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.77 7.39 -52.49 -0.39 1.38 16 38 H 0.06 0.79 7.61 -51.93 -0.40 0.39 16 39 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 40 H 0.08 1.04 6.29 -51.93 -0.33 0.71 16 41 H 0.08 1.86 7.75 -51.93 -0.40 1.46 16 42 H 0.06 1.00 5.33 -51.93 -0.28 0.72 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.86 7.88 -51.93 -0.41 0.45 16 45 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.07 1.40 7.09 -51.93 -0.37 1.03 16 49 H 0.25 6.58 8.31 -40.82 -0.34 6.25 16 50 H 0.13 1.65 7.94 -52.49 -0.42 1.23 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -29.21 385.22 -9.49 -38.70 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.70 Total: 5.60 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.21 Total: -2.01 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.23 Total: -48.65 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.12 Total: -15.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.21 -9.49 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029599978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.096 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds