Wall clock time and date at job start Wed Apr 1 2020 03:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 116.99921 * 2 1 4 4 C 1.38756 * 120.05291 * 0.02562 * 3 2 1 5 5 C 1.38125 * 119.93882 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05782 * 359.74621 * 5 4 3 7 7 C 1.38245 * 120.11056 * 0.50727 * 6 5 4 8 8 C 1.50703 * 119.97301 * 179.76418 * 7 6 5 9 9 H 1.08999 * 109.47071 * 179.72159 * 8 7 6 10 10 C 1.53005 * 109.46829 * 59.72641 * 8 7 6 11 11 C 1.50700 * 109.47233 * 299.72668 * 8 7 6 12 12 O 1.21279 * 120.00063 * 9.06163 * 11 8 7 13 13 N 1.34772 * 120.00014 * 189.06493 * 11 8 7 14 14 C 1.47170 * 120.71164 * 4.02273 * 13 11 8 15 15 C 1.55889 * 107.95245 * 132.45293 * 14 13 11 16 16 H 1.09000 * 112.45322 * 181.85135 * 15 14 13 17 17 C 1.54543 * 108.44254 * 307.13158 * 15 14 13 18 18 C 1.53734 * 104.95571 * 88.28881 * 17 15 14 19 19 C 1.54550 * 104.95089 * 359.97438 * 18 17 15 20 20 H 1.08999 * 112.18544 * 146.28372 * 19 18 17 21 21 C 1.47167 * 120.71195 * 184.04519 * 13 11 8 22 22 N 1.48304 * 106.17671 * 58.78151 * 15 14 13 23 23 C 1.36939 * 128.07495 * 106.44290 * 22 15 14 24 24 H 1.07999 * 119.99610 * 164.51986 * 23 22 15 25 25 C 1.38813 * 120.00232 * 344.52591 * 23 22 15 26 26 N 1.31619 * 119.99837 * 350.21542 * 25 23 22 27 27 Si 1.86791 * 119.99977 * 170.21480 * 25 23 22 28 28 H 1.48504 * 109.46987 * 179.97438 * 27 25 23 29 29 H 1.48499 * 109.47614 * 299.99704 * 27 25 23 30 30 H 1.48497 * 109.47234 * 60.00255 * 27 25 23 31 31 C 1.38164 * 120.05906 * 359.49315 * 7 6 5 32 32 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47304 * 299.99685 * 1 2 3 34 34 H 1.08998 * 109.46875 * 60.00180 * 1 2 3 35 35 H 1.07997 * 120.02985 * 359.95588 * 4 3 2 36 36 H 1.08001 * 119.96925 * 180.02562 * 5 4 3 37 37 H 1.08002 * 119.94728 * 180.26954 * 6 5 4 38 38 H 1.09002 * 109.46646 * 293.16050 * 10 8 7 39 39 H 1.08991 * 109.47245 * 53.15768 * 10 8 7 40 40 H 1.08999 * 109.46639 * 173.16209 * 10 8 7 41 41 H 1.09001 * 109.74824 * 252.41739 * 14 13 11 42 42 H 1.08999 * 109.74901 * 13.09136 * 14 13 11 43 43 H 1.08995 * 110.36517 * 207.00501 * 17 15 14 44 44 H 1.09003 * 110.36593 * 329.21160 * 17 15 14 45 45 H 1.08996 * 110.42239 * 241.07016 * 18 17 15 46 46 H 1.09002 * 110.21019 * 118.81528 * 18 17 15 47 47 H 1.08997 * 109.75196 * 107.58732 * 21 13 11 48 48 H 1.09003 * 109.78511 * 346.87455 * 21 13 11 49 49 H 0.97001 * 119.99935 * 180.02562 * 26 25 23 50 50 H 1.07994 * 120.03311 * 180.23261 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0559 2.5171 0.0006 8 6 5.5608 2.5982 0.0010 9 1 5.9789 1.5916 0.0009 10 6 6.0309 3.3455 1.2506 11 6 6.0245 3.3349 -1.2291 12 8 5.2178 3.8945 -1.9411 13 7 7.3358 3.3719 -1.5382 14 6 8.3185 2.6258 -0.7359 15 6 9.2462 1.8457 -1.7161 16 1 9.9862 1.2386 -1.1946 17 6 8.3598 1.0146 -2.6711 18 6 8.0507 1.9567 -3.8460 19 6 8.7763 3.2767 -3.5002 20 1 9.1476 3.7873 -4.3888 21 6 7.8159 4.1595 -2.6849 22 7 9.8737 2.8656 -2.5909 23 6 11.1661 3.3179 -2.5681 24 1 11.5592 3.8717 -3.4079 25 6 11.9708 3.0646 -1.4658 26 7 11.4448 2.5631 -0.3684 27 14 13.8000 3.4353 -1.5398 28 1 14.4303 3.0786 -0.2433 29 1 14.4227 2.6403 -2.6286 30 1 14.0015 4.8823 -1.8060 31 6 3.4312 1.2848 0.0000 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 0.2128 2.3203 0.0002 36 1 1.3339 4.5114 0.0019 37 1 3.7922 4.6381 0.0112 38 1 5.7144 4.3869 1.1916 39 1 5.5950 2.8830 2.1361 40 1 7.1180 3.2992 1.3142 41 1 8.9074 3.3199 -0.1362 42 1 7.8025 1.9216 -0.0832 43 1 8.9016 0.1374 -3.0244 44 1 7.4395 0.7147 -2.1698 45 1 6.9768 2.1245 -3.9266 46 1 8.4413 1.5409 -4.7748 47 1 8.3420 5.0453 -2.3290 48 1 6.9719 4.4576 -3.3070 49 1 12.0070 2.3864 0.4021 50 1 4.0207 0.3799 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029599978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:11 Heat of formation + Delta-G solvation = -22.712300 kcal Electronic energy + Delta-G solvation = -31502.897341 eV Core-core repulsion = 27495.803071 eV Total energy + Delta-G solvation = -4007.094270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82749 -40.95049 -39.61791 -38.22692 -35.53265 -34.89181 -34.05762 -32.11437 -31.62776 -31.03557 -30.00464 -28.11244 -27.89051 -25.98847 -25.39886 -24.91537 -23.51276 -22.54096 -21.30685 -20.88781 -20.16254 -18.85045 -18.36702 -17.71638 -17.18887 -17.07321 -16.76265 -16.61653 -16.54153 -16.25667 -15.64727 -15.51506 -15.04619 -14.72376 -14.64357 -14.44853 -14.34062 -14.27146 -13.73798 -13.54683 -13.36608 -13.28860 -13.11576 -13.03027 -12.94504 -12.82589 -12.64949 -12.56483 -12.33767 -12.29693 -12.00291 -11.87275 -11.81645 -11.65903 -11.46943 -11.40552 -11.11552 -10.83134 -10.49356 -9.78769 -9.66151 -9.08977 -8.65435 -7.83160 -5.16802 0.34533 0.54467 1.51548 1.52679 1.58263 1.71075 2.12400 2.41904 2.53438 2.84721 3.36110 3.50459 3.55882 3.69948 3.90430 4.08720 4.10159 4.14101 4.16169 4.21543 4.24184 4.33140 4.36316 4.41685 4.42840 4.49374 4.56943 4.60619 4.67689 4.73597 4.76311 4.81649 4.84765 4.90273 4.98965 5.04971 5.08048 5.09609 5.16219 5.21065 5.33900 5.36413 5.38496 5.51919 5.56888 5.63309 5.70479 5.82586 5.86494 6.26041 6.49723 6.63304 7.11039 7.26641 7.74683 8.54766 9.28429 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002757 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.441933 B =10153.247206 C =10227.366250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.208 4.208 5 C -0.087 4.087 6 C -0.132 4.132 7 C -0.034 4.034 8 C -0.066 4.066 9 H 0.113 0.887 10 C -0.135 4.135 11 C 0.515 3.485 12 O -0.579 6.579 13 N -0.590 5.590 14 C 0.120 3.880 15 C 0.162 3.838 16 H 0.090 0.910 17 C -0.126 4.126 18 C -0.112 4.112 19 C 0.130 3.870 20 H 0.080 0.920 21 C 0.110 3.890 22 N -0.604 5.604 23 C -0.237 4.237 24 H 0.072 0.928 25 C -0.048 4.048 26 N -0.930 5.930 27 Si 0.968 3.032 28 H -0.295 1.295 29 H -0.284 1.284 30 H -0.284 1.284 31 C -0.160 4.160 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.250 0.750 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 -3.520 3.173 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.068 3.932 4 C -0.226 4.226 5 C -0.105 4.105 6 C -0.150 4.150 7 C -0.035 4.035 8 C -0.087 4.087 9 H 0.131 0.869 10 C -0.192 4.192 11 C 0.304 3.696 12 O -0.459 6.459 13 N -0.321 5.321 14 C -0.004 4.004 15 C 0.055 3.945 16 H 0.107 0.893 17 C -0.165 4.165 18 C -0.151 4.151 19 C 0.022 3.978 20 H 0.098 0.902 21 C -0.015 4.015 22 N -0.325 5.325 23 C -0.365 4.365 24 H 0.090 0.910 25 C -0.243 4.243 26 N -0.577 5.577 27 Si 0.797 3.203 28 H -0.221 1.221 29 H -0.211 1.211 30 H -0.211 1.211 31 C -0.178 4.178 32 H 0.136 0.864 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.739 -3.398 2.937 20.244 hybrid contribution 1.228 0.580 -0.012 1.358 sum -18.511 -2.818 2.925 18.952 Atomic orbital electron populations 1.23333 0.76496 1.05504 1.02228 1.86040 1.23454 1.26721 1.88868 1.19037 0.92147 0.84912 0.97149 1.21466 1.01076 0.91731 1.08343 1.21172 0.94044 0.98133 0.97170 1.20919 0.94348 0.97782 1.01999 1.19158 0.93479 0.92878 0.97961 1.20262 0.92679 1.01740 0.93987 0.86915 1.21776 1.01997 1.00035 0.95399 1.20772 0.81485 0.80622 0.86694 1.90623 1.53526 1.48625 1.53163 1.48131 1.06205 1.47787 1.29947 1.22708 0.89459 0.94870 0.93394 1.22254 0.91933 0.89627 0.90696 0.89259 1.22418 0.99135 0.97873 0.97033 1.22261 0.98984 0.95626 0.98251 1.22115 0.88088 0.94502 0.93083 0.90228 1.22127 0.97386 0.93673 0.88269 1.45333 1.06081 1.43554 1.37562 1.19191 0.86550 1.30617 1.00183 0.91025 1.25412 1.01584 1.02241 0.95023 1.69955 1.34702 1.50222 1.02801 0.85330 0.81116 0.77609 0.76196 1.22071 1.21087 1.21062 1.20384 0.92232 0.97884 1.07343 0.86387 0.91494 0.91970 0.83067 0.83685 0.87000 0.92573 0.89394 0.91507 0.93017 0.89579 0.92378 0.91525 0.92126 0.91689 0.93901 0.90238 0.94107 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.37 10.50 -92.43 -0.97 -8.35 16 3 C 0.11 2.74 6.69 22.51 0.15 2.89 16 4 C -0.21 -4.35 9.04 22.37 0.20 -4.15 16 5 C -0.09 -1.97 10.04 22.25 0.22 -1.75 16 6 C -0.13 -3.62 7.91 22.28 0.18 -3.44 16 7 C -0.03 -0.95 4.48 -19.88 -0.09 -1.04 16 8 C -0.07 -1.85 2.06 -12.28 -0.03 -1.88 16 9 H 0.11 2.91 6.65 -2.39 -0.02 2.89 16 10 C -0.13 -3.39 8.63 71.98 0.62 -2.77 16 11 C 0.52 18.06 6.89 87.66 0.60 18.66 16 12 O -0.58 -23.15 14.29 -3.03 -0.04 -23.19 16 13 N -0.59 -21.76 2.29 -811.06 -1.86 -23.62 16 14 C 0.12 4.60 4.49 87.25 0.39 4.99 16 15 C 0.16 6.92 3.21 46.17 0.15 7.07 16 16 H 0.09 4.38 6.38 -2.39 -0.02 4.36 16 17 C -0.13 -4.50 6.19 31.37 0.19 -4.30 16 18 C -0.11 -3.94 6.18 31.37 0.19 -3.74 16 19 C 0.13 5.14 4.27 45.45 0.19 5.33 16 20 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 21 C 0.11 4.28 5.94 86.53 0.51 4.79 16 22 N -0.60 -28.24 2.78 -632.98 -1.76 -30.00 16 23 C -0.24 -12.31 10.37 84.03 0.87 -11.44 16 24 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 25 C -0.05 -2.49 5.41 84.86 0.46 -2.03 16 26 N -0.93 -49.69 10.40 21.65 0.23 -49.46 16 27 Si 0.97 43.36 29.56 68.60 2.03 45.39 16 28 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 30 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 31 C -0.16 -4.23 9.61 22.37 0.21 -4.01 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 34 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 35 H 0.15 2.20 6.30 -2.91 -0.02 2.19 16 36 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.11 3.22 7.39 -2.91 -0.02 3.20 16 38 H 0.06 1.45 7.61 -2.39 -0.02 1.43 16 39 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 40 H 0.07 1.80 6.29 -2.39 -0.02 1.78 16 41 H 0.05 2.35 7.75 -2.39 -0.02 2.33 16 42 H 0.09 2.81 5.33 -2.39 -0.01 2.80 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.07 2.16 7.88 -2.39 -0.02 2.14 16 45 H 0.06 2.08 7.86 -2.39 -0.02 2.06 16 46 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.08 2.99 7.09 -2.39 -0.02 2.98 16 49 H 0.25 13.16 8.31 -92.71 -0.77 12.39 16 50 H 0.13 3.25 7.94 -2.91 -0.02 3.23 16 Total: -1.00 -62.94 385.22 4.72 -58.22 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.94 Total: 26.50 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 6.16 Total: 4.51 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -3.39 Total: -103.08 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.01 Total: -31.54 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -62.94 4.72 -58.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029599978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.510 kcal (2) G-P(sol) polarization free energy of solvation -62.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds