Wall clock time and date at job start Wed Apr 1 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.67254 * 2 1 4 4 C 1.54716 * 110.74863 * 236.56919 * 2 1 3 5 5 C 1.51677 * 101.88180 * 266.95487 * 4 2 1 6 6 C 1.37703 * 132.12340 * 164.29171 * 5 4 2 7 7 C 1.38598 * 120.31608 * 180.52940 * 6 5 4 8 8 C 1.37823 * 119.97336 * 359.72981 * 7 6 5 9 9 C 1.39486 * 120.18890 * 0.32510 * 8 7 6 10 10 C 1.47544 * 120.05232 * 179.88087 * 9 8 7 11 11 O 1.21584 * 119.99716 * 179.72261 * 10 9 8 12 12 N 1.34773 * 120.00039 * 359.72318 * 10 9 8 13 13 C 1.46500 * 120.00050 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47297 * 324.99623 * 13 12 10 15 15 C 1.52997 * 109.47007 * 85.00124 * 13 12 10 16 16 C 1.53002 * 109.46817 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46972 * 299.99733 * 16 15 13 18 18 H 1.09000 * 109.47380 * 299.99696 * 17 16 15 19 19 N 1.46510 * 109.46858 * 180.02562 * 17 16 15 20 20 C 1.36936 * 119.99911 * 154.99804 * 19 17 16 21 21 H 1.08004 * 119.99844 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00080 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99818 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46898 * 90.00653 * 24 22 20 26 26 H 1.48505 * 109.47118 * 210.00295 * 24 22 20 27 27 H 1.48495 * 109.47439 * 330.00299 * 24 22 20 28 28 C 1.52997 * 109.47131 * 60.00459 * 17 16 15 29 29 C 1.52999 * 109.46991 * 299.99311 * 28 17 16 30 30 C 1.38832 * 106.99605 * 344.50592 * 5 4 2 31 31 O 1.35863 * 111.32681 * 359.11746 * 30 5 4 32 32 H 1.09004 * 109.47111 * 298.23042 * 1 2 3 33 33 H 1.09006 * 109.47074 * 58.22857 * 1 2 3 34 34 H 1.08996 * 109.47473 * 178.23191 * 1 2 3 35 35 H 1.08992 * 110.95102 * 25.10781 * 4 2 1 36 36 H 1.09002 * 110.94403 * 148.80995 * 4 2 1 37 37 H 1.07995 * 119.83949 * 0.53805 * 6 5 4 38 38 H 1.08005 * 120.01206 * 179.97438 * 7 6 5 39 39 H 1.08007 * 119.90814 * 180.10936 * 8 7 6 40 40 H 0.97002 * 119.99920 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47153 * 299.99911 * 15 13 12 42 42 H 1.08996 * 109.46952 * 60.00083 * 15 13 12 43 43 H 1.08996 * 109.47407 * 60.00219 * 16 15 13 44 44 H 1.09000 * 109.46986 * 179.97438 * 16 15 13 45 45 H 0.96994 * 119.99768 * 334.99990 * 19 17 16 46 46 H 0.97010 * 119.99788 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.47153 * 179.97438 * 28 17 16 48 48 H 1.08993 * 109.47194 * 60.00154 * 28 17 16 49 49 H 1.08993 * 109.47839 * 300.00447 * 29 28 17 50 50 H 1.09000 * 109.47160 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0781 -0.7971 -1.2074 5 6 2.2625 -2.1796 -0.6113 6 6 2.4474 -3.4166 -1.1872 7 6 2.5812 -4.5449 -0.3935 8 6 2.5350 -4.4306 0.9792 9 6 2.3470 -3.1825 1.5731 10 6 2.2954 -3.0640 3.0429 11 8 2.1365 -1.9749 3.5597 12 7 2.4243 -4.1628 3.8126 13 6 2.3736 -4.0450 5.2719 14 1 2.8354 -3.1059 5.5769 15 6 0.9157 -4.0707 5.7353 16 6 0.8628 -3.9470 7.2594 17 6 1.6199 -5.1161 7.8925 18 1 1.1583 -6.0554 7.5880 19 7 1.5687 -4.9980 9.3519 20 6 1.6997 -6.1142 10.1342 21 1 1.8412 -7.0817 9.6753 22 6 1.6518 -6.0023 11.5169 23 7 1.4798 -4.8233 12.0761 24 14 1.8312 -7.5250 12.5841 25 1 3.2660 -7.7417 12.8999 26 1 1.0695 -7.3383 13.8451 27 1 1.3010 -8.7053 11.8556 28 6 3.0778 -5.0904 7.4291 29 6 3.1308 -5.2141 5.9051 30 6 2.2126 -2.0363 0.7687 31 8 2.0393 -0.7367 1.1247 32 1 -0.3633 0.4861 0.9055 33 1 -0.3633 0.5411 -0.8737 34 1 -0.3634 -1.0271 -0.0317 35 1 1.3543 -0.8173 -2.0220 36 1 3.0305 -0.3879 -1.5445 37 1 2.4884 -3.5080 -2.2625 38 1 2.7255 -5.5128 -0.8504 39 1 2.6411 -5.3103 1.5968 40 1 2.5507 -5.0316 3.4002 41 1 0.3765 -3.2375 5.2846 42 1 0.4541 -5.0098 5.4304 43 1 1.3243 -3.0077 7.5640 44 1 -0.1758 -3.9649 7.5895 45 1 1.4420 -4.1291 9.7640 46 1 1.4459 -4.7451 13.0424 47 1 3.6173 -5.9230 7.8805 48 1 3.5393 -4.1511 7.7337 49 1 2.6692 -6.1534 5.6004 50 1 4.1694 -5.1963 5.5750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034693691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:32 Heat of formation + Delta-G solvation = -43.954684 kcal Electronic energy + Delta-G solvation = -29790.243279 eV Core-core repulsion = 25782.227871 eV Total energy + Delta-G solvation = -4008.015409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70177 -39.85217 -38.08139 -37.45811 -34.79358 -33.55553 -32.99677 -31.42129 -30.79404 -30.35501 -30.21264 -27.39310 -27.10317 -24.34435 -23.30890 -22.45256 -22.25132 -22.00104 -21.02377 -20.31347 -19.41405 -17.86816 -17.37940 -16.98183 -16.80025 -16.40349 -15.80999 -15.40995 -15.07975 -14.81916 -14.46146 -14.11072 -13.98741 -13.86830 -13.70670 -13.53964 -13.38492 -12.98283 -12.81814 -12.72817 -12.54366 -12.46156 -12.19014 -12.09644 -11.81858 -11.73584 -11.41717 -11.39172 -11.23496 -10.85876 -10.73223 -10.68034 -10.65886 -10.20164 -10.12571 -9.83831 -9.66754 -9.49131 -9.32991 -8.91294 -8.80464 -8.50871 -6.90309 -5.71889 -3.00324 0.52803 0.92748 2.70330 2.90620 3.12935 3.45783 3.50614 3.52567 3.55281 3.93516 4.07610 4.37570 4.44798 4.56928 4.62775 4.72209 4.75157 4.84681 4.94526 5.04330 5.10068 5.12897 5.21597 5.33505 5.36672 5.37247 5.56055 5.58412 5.64846 5.71599 5.73387 5.77113 5.80773 5.86892 5.92554 5.94659 5.97657 6.10770 6.18768 6.34209 6.35744 6.37450 6.51244 6.65182 6.71260 6.75776 6.82020 7.03522 7.17999 7.53610 7.73694 8.27290 8.46964 9.57690 10.17279 10.51874 11.50876 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.001960 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.306263 B =14284.463165 C =15009.117192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.118 0.882 4 C -0.105 4.105 5 C -0.188 4.188 6 C -0.047 4.047 7 C -0.158 4.158 8 C -0.053 4.053 9 C -0.157 4.157 10 C 0.555 3.445 11 O -0.522 6.522 12 N -0.723 5.723 13 C 0.147 3.853 14 H 0.088 0.912 15 C -0.120 4.120 16 C -0.121 4.121 17 C 0.177 3.823 18 H 0.046 0.954 19 N -0.726 5.726 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.131 4.131 29 C -0.121 4.121 30 C 0.171 3.829 31 O -0.270 6.270 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.395 0.605 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 4.725 -33.459 33.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.136 0.864 4 C -0.142 4.142 5 C -0.189 4.189 6 C -0.065 4.065 7 C -0.176 4.176 8 C -0.072 4.072 9 C -0.161 4.161 10 C 0.342 3.658 11 O -0.398 6.398 12 N -0.375 5.375 13 C 0.043 3.957 14 H 0.106 0.894 15 C -0.160 4.160 16 C -0.160 4.160 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.366 5.366 20 C -0.367 4.367 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.172 4.172 29 C -0.160 4.160 30 C 0.123 3.877 31 O -0.182 6.182 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.229 0.771 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.182 5.486 -32.745 33.223 hybrid contribution 0.181 -1.021 0.395 1.110 sum 1.363 4.465 -32.350 32.685 Atomic orbital electron populations 1.22246 0.93933 1.03274 1.03391 1.23552 0.95123 0.96749 0.83207 0.86387 1.21886 1.02783 0.90938 0.98555 1.20802 1.08709 0.95906 0.93448 1.20467 0.95498 0.90408 1.00149 1.20954 1.04653 0.98801 0.93182 1.21103 0.95394 0.95328 0.95387 1.19354 1.12269 0.91309 0.93145 1.18052 0.77112 0.84593 0.86075 1.90840 1.48072 1.26427 1.74506 1.46073 1.74384 1.09522 1.07483 1.21107 0.96707 1.00462 0.77409 0.89403 1.21837 0.95679 1.01710 0.96730 1.21759 1.01234 0.99850 0.93136 1.20237 0.91965 0.95718 0.85337 0.93626 1.42450 1.86979 1.08038 0.99125 1.19241 1.41395 0.87875 0.88215 0.91240 1.24749 1.03123 0.96615 0.96690 1.69669 1.57047 1.21701 1.09739 0.86210 0.77486 0.82372 0.80249 1.21804 1.21844 1.20825 1.22217 1.01188 1.02243 0.91588 1.21812 0.99321 0.97059 0.97823 1.19469 0.91514 0.84892 0.91792 1.87091 1.78197 1.15750 1.37171 0.90894 0.90612 0.91938 0.88775 0.88938 0.85391 0.84790 0.84723 0.77055 0.92035 0.92090 0.92056 0.91658 0.78279 0.93570 0.91573 0.92386 0.91868 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.49 37.16 0.35 -0.86 16 2 C 0.07 0.55 4.32 -25.83 -0.11 0.44 16 3 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.10 -0.65 6.65 -26.50 -0.18 -0.83 16 5 C -0.19 -1.63 6.26 -104.12 -0.65 -2.28 16 6 C -0.05 -0.32 10.02 -39.64 -0.40 -0.72 16 7 C -0.16 -1.05 10.05 -39.60 -0.40 -1.45 16 8 C -0.05 -0.44 9.51 -39.27 -0.37 -0.81 16 9 C -0.16 -1.85 5.89 -104.72 -0.62 -2.47 16 10 C 0.55 7.96 7.73 -12.47 -0.10 7.87 16 11 O -0.52 -9.68 15.53 -10.29 -0.16 -9.84 16 12 N -0.72 -8.71 5.03 -54.84 -0.28 -8.98 16 13 C 0.15 2.08 2.45 -67.93 -0.17 1.91 16 14 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 15 C -0.12 -1.81 5.49 -26.73 -0.15 -1.95 16 16 C -0.12 -2.13 5.39 -26.73 -0.14 -2.28 16 17 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 18 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 19 N -0.73 -18.45 5.12 -53.42 -0.27 -18.73 16 20 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 24 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C -0.13 -2.33 5.50 -26.73 -0.15 -2.47 16 29 C -0.12 -1.65 5.39 -26.73 -0.14 -1.79 16 30 C 0.17 2.04 6.64 -38.44 -0.26 1.79 16 31 O -0.27 -3.50 9.84 -34.89 -0.34 -3.84 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 35 H 0.09 0.39 7.92 -51.93 -0.41 -0.02 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 38 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 39 H 0.14 0.76 6.37 -52.48 -0.33 0.43 16 40 H 0.39 3.48 6.61 -40.82 -0.27 3.21 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.38 10.46 7.80 -40.82 -0.32 10.14 16 46 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -35.17 400.90 -11.25 -46.42 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -8.03 Total: 9.11 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.91 Total: -9.85 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.18 Total: -55.61 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.50 Total: -13.68 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.17 -11.25 -46.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034693691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.468 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds