Wall clock time and date at job start Wed Apr 1 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.67254 * 2 1 4 4 C 1.54716 * 110.74863 * 236.56919 * 2 1 3 5 5 C 1.51677 * 101.88180 * 266.95487 * 4 2 1 6 6 C 1.37703 * 132.12340 * 164.29171 * 5 4 2 7 7 C 1.38598 * 120.31608 * 180.52940 * 6 5 4 8 8 C 1.37823 * 119.97336 * 359.72981 * 7 6 5 9 9 C 1.39486 * 120.18890 * 0.32510 * 8 7 6 10 10 C 1.47544 * 120.05232 * 179.88087 * 9 8 7 11 11 O 1.21584 * 119.99716 * 179.72261 * 10 9 8 12 12 N 1.34773 * 120.00039 * 359.72318 * 10 9 8 13 13 C 1.46500 * 120.00050 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47297 * 324.99623 * 13 12 10 15 15 C 1.52997 * 109.47007 * 85.00124 * 13 12 10 16 16 C 1.53002 * 109.46817 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46972 * 299.99733 * 16 15 13 18 18 H 1.09000 * 109.47380 * 299.99696 * 17 16 15 19 19 N 1.46510 * 109.46858 * 180.02562 * 17 16 15 20 20 C 1.36936 * 119.99911 * 154.99804 * 19 17 16 21 21 H 1.08004 * 119.99844 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00080 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99818 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46898 * 90.00653 * 24 22 20 26 26 H 1.48505 * 109.47118 * 210.00295 * 24 22 20 27 27 H 1.48495 * 109.47439 * 330.00299 * 24 22 20 28 28 C 1.52997 * 109.47131 * 60.00459 * 17 16 15 29 29 C 1.52999 * 109.46991 * 299.99311 * 28 17 16 30 30 C 1.38832 * 106.99605 * 344.50592 * 5 4 2 31 31 O 1.35863 * 111.32681 * 359.11746 * 30 5 4 32 32 H 1.09004 * 109.47111 * 298.23042 * 1 2 3 33 33 H 1.09006 * 109.47074 * 58.22857 * 1 2 3 34 34 H 1.08996 * 109.47473 * 178.23191 * 1 2 3 35 35 H 1.08992 * 110.95102 * 25.10781 * 4 2 1 36 36 H 1.09002 * 110.94403 * 148.80995 * 4 2 1 37 37 H 1.07995 * 119.83949 * 0.53805 * 6 5 4 38 38 H 1.08005 * 120.01206 * 179.97438 * 7 6 5 39 39 H 1.08007 * 119.90814 * 180.10936 * 8 7 6 40 40 H 0.97002 * 119.99920 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47153 * 299.99911 * 15 13 12 42 42 H 1.08996 * 109.46952 * 60.00083 * 15 13 12 43 43 H 1.08996 * 109.47407 * 60.00219 * 16 15 13 44 44 H 1.09000 * 109.46986 * 179.97438 * 16 15 13 45 45 H 0.96994 * 119.99768 * 334.99990 * 19 17 16 46 46 H 0.97010 * 119.99788 * 179.97438 * 23 22 20 47 47 H 1.09002 * 109.47153 * 179.97438 * 28 17 16 48 48 H 1.08993 * 109.47194 * 60.00154 * 28 17 16 49 49 H 1.08993 * 109.47839 * 300.00447 * 29 28 17 50 50 H 1.09000 * 109.47160 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0781 -0.7971 -1.2074 5 6 2.2625 -2.1796 -0.6113 6 6 2.4474 -3.4166 -1.1872 7 6 2.5812 -4.5449 -0.3935 8 6 2.5350 -4.4306 0.9792 9 6 2.3470 -3.1825 1.5731 10 6 2.2954 -3.0640 3.0429 11 8 2.1365 -1.9749 3.5597 12 7 2.4243 -4.1628 3.8126 13 6 2.3736 -4.0450 5.2719 14 1 2.8354 -3.1059 5.5769 15 6 0.9157 -4.0707 5.7353 16 6 0.8628 -3.9470 7.2594 17 6 1.6199 -5.1161 7.8925 18 1 1.1583 -6.0554 7.5880 19 7 1.5687 -4.9980 9.3519 20 6 1.6997 -6.1142 10.1342 21 1 1.8412 -7.0817 9.6753 22 6 1.6518 -6.0023 11.5169 23 7 1.4798 -4.8233 12.0761 24 14 1.8312 -7.5250 12.5841 25 1 3.2660 -7.7417 12.8999 26 1 1.0695 -7.3383 13.8451 27 1 1.3010 -8.7053 11.8556 28 6 3.0778 -5.0904 7.4291 29 6 3.1308 -5.2141 5.9051 30 6 2.2126 -2.0363 0.7687 31 8 2.0393 -0.7367 1.1247 32 1 -0.3633 0.4861 0.9055 33 1 -0.3633 0.5411 -0.8737 34 1 -0.3634 -1.0271 -0.0317 35 1 1.3543 -0.8173 -2.0220 36 1 3.0305 -0.3879 -1.5445 37 1 2.4884 -3.5080 -2.2625 38 1 2.7255 -5.5128 -0.8504 39 1 2.6411 -5.3103 1.5968 40 1 2.5507 -5.0316 3.4002 41 1 0.3765 -3.2375 5.2846 42 1 0.4541 -5.0098 5.4304 43 1 1.3243 -3.0077 7.5640 44 1 -0.1758 -3.9649 7.5895 45 1 1.4420 -4.1291 9.7640 46 1 1.4459 -4.7451 13.0424 47 1 3.6173 -5.9230 7.8805 48 1 3.5393 -4.1511 7.7337 49 1 2.6692 -6.1534 5.6004 50 1 4.1694 -5.1963 5.5750 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034693691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:31 Heat of formation + Delta-G solvation = -66.079979 kcal Electronic energy + Delta-G solvation = -29791.202704 eV Core-core repulsion = 25782.227871 eV Total energy + Delta-G solvation = -4008.974833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.37490 -40.95648 -39.30592 -38.28376 -36.36897 -34.72164 -34.10440 -32.66041 -31.73333 -31.70068 -31.23137 -28.87207 -27.72496 -25.81813 -24.65892 -23.63035 -23.06810 -22.72845 -22.24329 -21.41347 -20.79016 -19.13740 -18.64875 -18.07733 -17.54504 -17.24821 -16.93076 -16.60914 -16.15483 -15.93709 -15.70122 -15.36059 -15.31030 -15.07159 -14.66078 -14.55533 -14.45727 -14.14675 -13.97128 -13.70087 -13.49733 -13.22251 -13.16821 -13.09577 -13.03270 -12.80839 -12.77425 -12.43549 -12.39429 -12.24031 -12.04860 -12.00725 -11.94910 -11.81452 -11.71954 -11.60986 -11.16782 -10.85731 -10.84408 -10.15548 -9.85463 -9.16381 -8.99211 -7.91961 -5.20794 -0.15979 0.31989 1.47564 1.49790 1.58008 1.86056 2.11014 2.28273 2.57765 2.80333 3.40717 3.40926 3.51931 3.67550 3.76087 3.87115 3.88548 3.91840 3.96873 4.18052 4.21407 4.24577 4.30492 4.36899 4.38937 4.44166 4.53201 4.57872 4.64251 4.65799 4.72025 4.81016 4.84226 4.90506 4.98879 5.01363 5.09580 5.10360 5.16941 5.18704 5.21918 5.28151 5.34243 5.41102 5.46474 5.53753 5.54444 5.64620 5.68586 6.17012 6.29994 6.57824 7.26284 7.35056 8.12201 8.35242 9.32025 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.001960 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.306263 B =14284.463165 C =15009.117192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.056 3.944 3 H 0.131 0.869 4 C -0.095 4.095 5 C -0.193 4.193 6 C -0.040 4.040 7 C -0.150 4.150 8 C -0.052 4.052 9 C -0.189 4.189 10 C 0.551 3.449 11 O -0.578 6.578 12 N -0.706 5.706 13 C 0.154 3.846 14 H 0.059 0.941 15 C -0.109 4.109 16 C -0.112 4.112 17 C 0.174 3.826 18 H 0.051 0.949 19 N -0.741 5.741 20 C -0.233 4.233 21 H 0.080 0.920 22 C -0.083 4.083 23 N -0.974 5.974 24 Si 0.974 3.026 25 H -0.288 1.288 26 H -0.299 1.299 27 H -0.266 1.266 28 C -0.123 4.123 29 C -0.106 4.106 30 C 0.136 3.864 31 O -0.314 6.314 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.414 0.586 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.369 0.631 46 H 0.249 0.751 47 H 0.055 0.945 48 H 0.040 0.960 49 H 0.090 0.910 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 1.973 -37.469 37.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.001 3.999 3 H 0.148 0.852 4 C -0.132 4.132 5 C -0.194 4.194 6 C -0.058 4.058 7 C -0.168 4.168 8 C -0.071 4.071 9 C -0.193 4.193 10 C 0.340 3.660 11 O -0.458 6.458 12 N -0.358 5.358 13 C 0.049 3.951 14 H 0.077 0.923 15 C -0.148 4.148 16 C -0.151 4.151 17 C 0.066 3.934 18 H 0.069 0.931 19 N -0.380 5.380 20 C -0.365 4.365 21 H 0.098 0.902 22 C -0.275 4.275 23 N -0.625 5.625 24 Si 0.803 3.197 25 H -0.215 1.215 26 H -0.226 1.226 27 H -0.191 1.191 28 C -0.164 4.164 29 C -0.145 4.145 30 C 0.089 3.911 31 O -0.227 6.227 32 H 0.072 0.928 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.138 0.862 36 H 0.123 0.877 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.177 0.823 40 H 0.253 0.747 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.200 0.800 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.108 0.892 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.717 2.668 -36.836 36.973 hybrid contribution 0.008 -0.133 1.514 1.520 sum 1.724 2.535 -35.322 35.455 Atomic orbital electron populations 1.22225 0.93652 1.02603 1.03846 1.23879 0.95513 0.97357 0.83119 0.85166 1.21921 1.03975 0.89194 0.98085 1.21165 1.08358 0.97702 0.92163 1.20962 0.93310 0.89525 1.02016 1.21425 1.02638 1.00327 0.92407 1.21413 0.94483 0.94480 0.96679 1.19416 1.15308 0.93166 0.91371 1.18601 0.75870 0.84024 0.87525 1.90804 1.50782 1.28536 1.75714 1.45808 1.73605 1.10151 1.06274 1.20838 0.95820 0.99572 0.78881 0.92320 1.21719 0.96503 1.02283 0.94289 1.21631 1.00142 0.98292 0.95066 1.20473 0.93728 0.96591 0.82639 0.93097 1.42710 1.87119 1.06844 1.01349 1.19661 1.39332 0.88832 0.88697 0.90215 1.25612 1.04119 0.99526 0.98238 1.69846 1.59220 1.23957 1.09491 0.85124 0.77216 0.79302 0.78052 1.21521 1.22561 1.19087 1.22009 0.98785 1.00880 0.94733 1.21671 1.00815 0.97697 0.94274 1.19902 0.93043 0.84633 0.93544 1.87030 1.78942 1.16946 1.39793 0.92789 0.87564 0.93238 0.86189 0.87696 0.81956 0.81249 0.82284 0.74738 0.93188 0.89953 0.93584 0.92523 0.79963 0.94222 0.92601 0.94143 0.89190 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.49 71.98 0.68 -1.67 16 2 C 0.06 0.90 4.32 31.18 0.13 1.03 16 3 H 0.13 1.57 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -0.99 6.65 30.75 0.20 -0.79 16 5 C -0.19 -2.99 6.26 -19.54 -0.12 -3.11 16 6 C -0.04 -0.40 10.02 22.23 0.22 -0.17 16 7 C -0.15 -1.37 10.05 22.26 0.22 -1.15 16 8 C -0.05 -0.71 9.51 22.47 0.21 -0.50 16 9 C -0.19 -4.39 5.89 -19.93 -0.12 -4.51 16 10 C 0.55 16.18 7.73 86.70 0.67 16.85 16 11 O -0.58 -22.95 15.53 10.92 0.17 -22.78 16 12 N -0.71 -16.25 5.03 -445.69 -2.24 -18.49 16 13 C 0.15 4.28 2.45 44.99 0.11 4.39 16 14 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 15 C -0.11 -3.25 5.49 30.59 0.17 -3.08 16 16 C -0.11 -4.08 5.39 30.59 0.16 -3.91 16 17 C 0.17 6.95 2.77 44.99 0.12 7.07 16 18 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 19 N -0.74 -38.56 5.12 -322.93 -1.65 -40.21 16 20 C -0.23 -13.09 9.93 84.03 0.83 -12.26 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 23 N -0.97 -61.44 13.06 21.65 0.28 -61.16 16 24 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 C -0.12 -4.33 5.50 30.59 0.17 -4.16 16 29 C -0.11 -2.66 5.39 30.60 0.17 -2.50 16 30 C 0.14 3.28 6.64 23.01 0.15 3.43 16 31 O -0.31 -8.64 9.84 -77.11 -0.76 -9.40 16 32 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 35 H 0.12 0.60 7.92 -2.39 -0.02 0.58 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 38 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 39 H 0.16 1.19 6.37 -2.91 -0.02 1.17 16 40 H 0.41 6.12 6.61 -92.71 -0.61 5.51 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 45 H 0.37 21.01 7.80 -92.71 -0.72 20.29 16 46 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 47 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -81.95 400.90 1.91 -80.04 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.38 Total: 32.61 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.47 Total: -9.43 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -3.61 Total: -119.86 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.59 Total: -32.19 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -81.95 1.91 -80.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034693691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.958 kcal (2) G-P(sol) polarization free energy of solvation -81.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds