Wall clock time and date at job start Wed Apr 1 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.85981 * 2 1 4 4 C 1.51945 * 110.89886 * 123.91516 * 2 1 3 5 5 C 1.37738 * 132.10036 * 282.23084 * 4 2 1 6 6 C 1.38357 * 119.97498 * 181.15554 * 5 4 2 7 7 C 1.38279 * 119.76637 * 0.02562 * 6 5 4 8 8 C 1.37930 * 120.35230 * 359.80455 * 7 6 5 9 9 C 1.38878 * 107.10572 * 102.93047 * 4 2 1 10 10 O 1.36136 * 111.23464 * 358.75778 * 9 4 2 11 11 C 1.43772 * 109.23736 * 19.03239 * 10 9 4 12 12 H 1.09002 * 110.74350 * 90.76616 * 11 10 9 13 13 C 1.50700 * 110.75078 * 213.92778 * 11 10 9 14 14 O 1.21290 * 119.99996 * 1.09037 * 13 11 10 15 15 N 1.34777 * 120.00154 * 181.08168 * 13 11 10 16 16 C 1.46502 * 120.00176 * 180.02562 * 15 13 11 17 17 H 1.09005 * 109.46953 * 325.00356 * 16 15 13 18 18 C 1.52998 * 109.47066 * 85.00231 * 16 15 13 19 19 C 1.52999 * 109.47074 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.46784 * 299.99794 * 19 18 16 21 21 H 1.08998 * 109.47704 * 300.00111 * 20 19 18 22 22 N 1.46502 * 109.47082 * 180.02562 * 20 19 18 23 23 C 1.36930 * 120.00159 * 85.00068 * 22 20 19 24 24 H 1.08000 * 119.99841 * 0.02562 * 23 22 20 25 25 C 1.38810 * 120.00182 * 179.97438 * 23 22 20 26 26 N 1.31622 * 119.99887 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00212 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47297 * 89.99941 * 27 25 23 29 29 H 1.48503 * 109.47261 * 330.00122 * 27 25 23 30 30 H 1.48500 * 109.47454 * 210.00115 * 27 25 23 31 31 C 1.52998 * 109.47147 * 60.00251 * 20 19 18 32 32 C 1.52999 * 109.47074 * 299.99572 * 31 20 19 33 33 H 1.08996 * 109.46988 * 183.72820 * 1 2 3 34 34 H 1.08994 * 109.47183 * 303.73291 * 1 2 3 35 35 H 1.09004 * 109.46855 * 63.73257 * 1 2 3 36 36 H 1.08000 * 120.01491 * 1.18547 * 5 4 2 37 37 H 1.08001 * 120.11238 * 179.97438 * 6 5 4 38 38 H 1.08000 * 119.82161 * 179.83214 * 7 6 5 39 39 H 1.08004 * 119.88008 * 179.97438 * 8 7 6 40 40 H 0.97002 * 119.99947 * 0.02562 * 15 13 11 41 41 H 1.09004 * 109.46997 * 299.99932 * 18 16 15 42 42 H 1.08999 * 109.47305 * 59.99862 * 18 16 15 43 43 H 1.08998 * 109.47143 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.47461 * 59.99598 * 19 18 16 45 45 H 0.97008 * 119.99482 * 265.00123 * 22 20 19 46 46 H 0.96993 * 120.00105 * 359.97438 * 26 25 23 47 47 H 1.08999 * 109.47305 * 60.00070 * 31 20 19 48 48 H 1.09008 * 109.47699 * 179.97438 * 31 20 19 49 49 H 1.09006 * 109.47463 * 179.97438 * 32 31 20 50 50 H 1.08991 * 109.47309 * 300.00064 * 32 31 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0720 -0.7920 1.1780 5 6 2.1992 -0.4876 2.5153 6 6 2.7612 -1.4070 3.3831 7 6 3.1939 -2.6293 2.9025 8 6 3.0643 -2.9375 1.5644 9 6 2.4952 -2.0194 0.6849 10 8 2.2659 -2.1188 -0.6533 11 6 2.0829 -0.8024 -1.2016 12 1 3.0336 -0.3886 -1.5377 13 6 1.0852 -0.8283 -2.3308 14 8 0.5485 -1.8705 -2.6420 15 7 0.7893 0.3067 -2.9947 16 6 -0.1810 0.2816 -4.0921 17 1 -0.0951 -0.6616 -4.6316 18 6 -1.5956 0.4179 -3.5252 19 6 -2.6090 0.3911 -4.6712 20 6 -2.3285 1.5523 -5.6271 21 1 -2.4146 2.4957 -5.0880 22 7 -3.2992 1.5271 -6.7242 23 6 -4.5227 2.1221 -6.5696 24 1 -4.7720 2.6104 -5.6391 25 6 -5.4422 2.0987 -7.6092 26 7 -5.1382 1.5040 -8.7434 27 14 -7.1116 2.9098 -7.3981 28 1 -7.0314 4.3279 -7.8316 29 1 -7.5136 2.8509 -5.9697 30 1 -8.1172 2.1956 -8.2251 31 6 -0.9139 1.4161 -6.1940 32 6 0.0994 1.4429 -5.0480 33 1 -0.3633 -1.0255 0.0668 34 1 -0.3633 0.5706 0.8546 35 1 -0.3633 0.4548 -0.9216 36 1 1.8599 0.4682 2.8864 37 1 2.8624 -1.1705 4.4320 38 1 3.6352 -3.3465 3.5787 39 1 3.4052 -3.8943 1.1971 40 1 1.2187 1.1401 -2.7459 41 1 -1.7955 -0.4097 -2.8445 42 1 -1.6816 1.3611 -2.9857 43 1 -3.6167 0.4886 -4.2675 44 1 -2.5229 -0.5523 -5.2104 45 1 -3.0750 1.0888 -7.5601 46 1 -4.2715 1.0825 -8.8529 47 1 -0.8279 0.4727 -6.7332 48 1 -0.7142 2.2431 -6.8754 49 1 1.1072 1.3453 -5.4517 50 1 0.0134 2.3862 -4.5088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034803477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:21 Heat of formation + Delta-G solvation = -61.463805 kcal Electronic energy + Delta-G solvation = -30076.141364 eV Core-core repulsion = 26067.366703 eV Total energy + Delta-G solvation = -4008.774661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.68582 -40.91955 -39.38937 -38.23812 -36.64331 -35.41038 -34.59353 -32.41520 -31.78580 -31.22738 -30.86816 -29.09327 -27.93376 -25.61372 -24.76938 -23.72671 -23.33646 -22.55703 -22.10435 -21.50009 -20.88091 -19.36350 -18.49073 -18.38606 -18.03230 -17.28925 -17.17684 -16.85156 -16.02226 -15.99695 -15.91179 -15.38134 -15.15442 -15.12334 -14.95783 -14.77194 -14.42570 -14.22067 -14.04343 -14.00006 -13.75877 -13.53449 -13.20594 -13.12624 -13.00943 -12.74215 -12.58956 -12.40165 -12.36392 -12.24295 -12.09613 -12.01261 -11.87414 -11.64056 -11.54372 -11.50363 -11.14065 -10.94704 -10.83594 -10.14980 -9.88046 -9.18577 -9.10624 -8.38095 -5.31447 0.30098 0.38850 1.36989 1.54414 1.57073 1.68168 1.81821 2.44693 2.71342 2.75339 3.14234 3.31480 3.40311 3.60939 3.69140 3.73053 3.78537 3.83568 3.92237 4.18353 4.18568 4.22182 4.28578 4.28839 4.32853 4.42821 4.44887 4.50882 4.52233 4.56057 4.60013 4.68475 4.76067 4.85606 4.90031 5.03152 5.05672 5.06693 5.15442 5.16823 5.19002 5.36195 5.37225 5.43450 5.44749 5.53368 5.54118 5.62445 5.63289 6.15077 6.43631 6.50466 7.10662 7.11623 8.02003 8.13672 9.14022 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.001963 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.874654 B =14261.189725 C =14733.060029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 H 0.147 0.853 4 C -0.177 4.177 5 C -0.069 4.069 6 C -0.148 4.148 7 C -0.085 4.085 8 C -0.156 4.156 9 C 0.072 3.928 10 O -0.310 6.310 11 C 0.061 3.939 12 H 0.144 0.856 13 C 0.523 3.477 14 O -0.571 6.571 15 N -0.698 5.698 16 C 0.155 3.845 17 H 0.061 0.939 18 C -0.111 4.111 19 C -0.122 4.122 20 C 0.177 3.823 21 H 0.049 0.951 22 N -0.752 5.752 23 C -0.324 4.324 24 H 0.067 0.933 25 C -0.110 4.110 26 N -0.979 5.979 27 Si 1.129 2.871 28 H -0.282 1.282 29 H -0.274 1.274 30 H -0.296 1.296 31 C -0.115 4.115 32 C -0.104 4.104 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.422 0.578 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.357 0.643 46 H 0.243 0.757 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.252 0.623 26.768 35.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 H 0.164 0.836 4 C -0.178 4.178 5 C -0.087 4.087 6 C -0.165 4.165 7 C -0.103 4.103 8 C -0.174 4.174 9 C 0.027 3.973 10 O -0.224 6.224 11 C 0.002 3.998 12 H 0.162 0.838 13 C 0.309 3.691 14 O -0.449 6.449 15 N -0.352 5.352 16 C 0.050 3.950 17 H 0.079 0.921 18 C -0.150 4.150 19 C -0.163 4.163 20 C 0.069 3.931 21 H 0.067 0.933 22 N -0.393 5.393 23 C -0.456 4.456 24 H 0.085 0.915 25 C -0.301 4.301 26 N -0.627 5.627 27 Si 0.954 3.046 28 H -0.209 1.209 29 H -0.200 1.200 30 H -0.223 1.223 31 C -0.154 4.154 32 C -0.142 4.142 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.169 0.831 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.146 0.854 40 H 0.260 0.740 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.189 0.811 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.365 0.138 25.869 33.551 hybrid contribution 1.207 -0.875 -0.074 1.492 sum 22.572 -0.737 25.795 34.284 Atomic orbital electron populations 1.21911 0.93311 1.01377 1.04066 1.21421 0.96644 1.01014 0.88399 0.83571 1.20941 1.04440 0.96022 0.96373 1.20681 0.96950 1.00831 0.90210 1.21478 1.00343 0.93593 1.01128 1.21247 0.97788 0.97790 0.93428 1.20564 1.03486 1.00028 0.93364 1.19984 0.97169 0.96652 0.83465 1.86898 1.86817 1.29126 1.19553 1.23516 0.99907 0.82669 0.93694 0.83842 1.20370 0.82127 0.83850 0.82762 1.90763 1.53775 1.32952 1.67404 1.45737 1.44094 1.10703 1.34647 1.20854 0.87232 0.99878 0.87014 0.92053 1.21764 0.93989 1.02059 0.97213 1.22010 0.98018 0.99351 0.96961 1.20444 0.88570 0.95742 0.88311 0.93298 1.42714 1.14880 1.67505 1.14218 1.20393 0.93844 1.30403 1.00925 0.91536 1.27181 1.07470 1.02408 0.93030 1.70956 1.23666 1.41152 1.26932 0.82606 0.71303 0.75201 0.75515 1.20884 1.19955 1.22264 1.21660 0.93755 1.01698 0.98257 1.21648 0.99448 0.97989 0.95099 0.95422 0.89423 0.90955 0.83128 0.82546 0.82573 0.85407 0.73997 0.93582 0.89873 0.94343 0.94707 0.81112 0.94627 0.93123 0.91337 0.88948 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.42 71.98 0.61 -1.90 16 2 C -0.06 -0.76 3.65 -10.56 -0.04 -0.79 16 3 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.18 -2.87 5.63 -19.43 -0.11 -2.98 16 5 C -0.07 -0.80 10.03 22.18 0.22 -0.58 16 6 C -0.15 -1.51 10.07 22.31 0.22 -1.28 16 7 C -0.08 -1.03 10.02 22.21 0.22 -0.81 16 8 C -0.16 -2.79 10.06 22.45 0.23 -2.57 16 9 C 0.07 1.55 7.04 22.68 0.16 1.71 16 10 O -0.31 -8.13 10.39 -76.88 -0.80 -8.93 16 11 C 0.06 1.12 3.95 30.43 0.12 1.24 16 12 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 13 C 0.52 12.40 5.45 87.66 0.48 12.88 16 14 O -0.57 -20.45 16.24 15.17 0.25 -20.20 16 15 N -0.70 -12.04 4.17 -442.52 -1.85 -13.89 16 16 C 0.15 3.65 2.45 44.99 0.11 3.76 16 17 H 0.06 1.85 7.58 -2.38 -0.02 1.83 16 18 C -0.11 -3.10 5.41 30.59 0.17 -2.93 16 19 C -0.12 -4.54 5.50 30.59 0.17 -4.37 16 20 C 0.18 6.82 2.77 44.99 0.12 6.95 16 21 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 22 N -0.75 -38.15 5.12 -322.95 -1.65 -39.81 16 23 C -0.32 -18.34 9.93 84.03 0.83 -17.50 16 24 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 25 C -0.11 -6.49 5.50 84.86 0.47 -6.03 16 26 N -0.98 -62.42 13.70 21.65 0.30 -62.12 16 27 Si 1.13 52.79 29.92 68.60 2.05 54.84 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 30 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 31 C -0.11 -3.44 5.39 30.59 0.16 -3.27 16 32 C -0.10 -2.07 5.39 30.59 0.16 -1.91 16 33 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.22 6.30 -2.39 -0.02 1.20 16 36 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 38 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.42 3.56 8.60 -92.71 -0.80 2.76 16 41 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.36 19.13 6.63 -92.70 -0.61 18.51 16 46 H 0.24 15.49 6.77 -92.71 -0.63 14.87 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 50 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -82.78 399.25 2.29 -80.49 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.32 Total: 30.01 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 4.31 Total: -20.39 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -3.20 Total: -115.82 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.55 Total: -29.14 kcal Atomic # 14 Polarization: 52.79 SS G_CDS: 2.05 Total: 54.84 kcal Total: -82.78 2.29 -80.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034803477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.029 kcal (2) G-P(sol) polarization free energy of solvation -82.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds