Wall clock time and date at job start Wed Apr 1 2020 02:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.83137 * 2 1 4 4 C 1.51643 * 110.94178 * 236.28710 * 2 1 3 5 5 C 1.37745 * 132.17697 * 46.43301 * 4 2 1 6 6 C 1.38339 * 119.97737 * 180.38149 * 5 4 2 7 7 C 1.38288 * 119.77438 * 359.96099 * 6 5 4 8 8 C 1.37933 * 120.34726 * 359.88603 * 7 6 5 9 9 C 1.38884 * 107.04184 * 226.45787 * 4 2 1 10 10 O 1.36138 * 111.23130 * 358.92770 * 9 4 2 11 11 C 1.43771 * 109.24447 * 19.01704 * 10 9 4 12 12 H 1.09001 * 110.74653 * 90.58066 * 11 10 9 13 13 C 1.50697 * 110.75229 * 213.93605 * 11 10 9 14 14 O 1.21284 * 119.99865 * 358.36176 * 13 11 10 15 15 N 1.34779 * 120.00053 * 178.36377 * 13 11 10 16 16 C 1.46494 * 119.99823 * 179.97438 * 15 13 11 17 17 H 1.08996 * 109.47551 * 35.00478 * 16 15 13 18 18 C 1.53003 * 109.47095 * 155.00107 * 16 15 13 19 19 C 1.53000 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47080 * 300.00069 * 19 18 16 21 21 H 1.09003 * 109.47159 * 300.00016 * 20 19 18 22 22 N 1.46497 * 109.47234 * 180.02562 * 20 19 18 23 23 C 1.36929 * 120.00331 * 154.99839 * 22 20 19 24 24 H 1.08004 * 120.00081 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00430 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99830 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00532 * 180.02562 * 25 23 22 28 28 H 1.48510 * 109.46815 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47596 * 119.99857 * 27 25 23 30 30 H 1.48503 * 109.47435 * 240.00493 * 27 25 23 31 31 C 1.53003 * 109.47111 * 59.99817 * 20 19 18 32 32 C 1.53000 * 109.47298 * 300.00050 * 31 20 19 33 33 H 1.09002 * 109.47153 * 182.25913 * 1 2 3 34 34 H 1.09001 * 109.46832 * 62.26104 * 1 2 3 35 35 H 1.09004 * 109.47261 * 302.26085 * 1 2 3 36 36 H 1.08000 * 120.00656 * 0.35470 * 5 4 2 37 37 H 1.08006 * 120.11438 * 179.97438 * 6 5 4 38 38 H 1.07999 * 119.82795 * 179.85768 * 7 6 5 39 39 H 1.07993 * 119.88370 * 179.97438 * 8 7 6 40 40 H 0.96999 * 120.00139 * 0.02562 * 15 13 11 41 41 H 1.08998 * 109.47302 * 300.00257 * 18 16 15 42 42 H 1.09003 * 109.46946 * 59.99991 * 18 16 15 43 43 H 1.08996 * 109.46915 * 59.99765 * 19 18 16 44 44 H 1.09003 * 109.47398 * 180.02562 * 19 18 16 45 45 H 0.97001 * 119.99775 * 334.99623 * 22 20 19 46 46 H 0.97005 * 120.00448 * 179.97438 * 26 25 23 47 47 H 1.08996 * 109.46618 * 60.00260 * 31 20 19 48 48 H 1.09000 * 109.46802 * 179.97438 * 31 20 19 49 49 H 1.08996 * 109.46915 * 300.00235 * 32 31 20 50 50 H 1.08998 * 109.46908 * 180.02562 * 32 31 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0720 -0.7861 -1.1781 5 6 1.7455 -0.7898 -2.5163 6 6 2.4115 -1.6326 -3.3879 7 6 3.4045 -2.4685 -2.9108 8 6 3.7353 -2.4642 -1.5717 9 6 3.0718 -1.6162 -0.6881 10 8 3.2484 -1.4385 0.6500 11 6 2.0829 -0.8026 1.2015 12 1 1.3589 -1.5460 1.5352 13 6 2.4621 0.1202 2.3309 14 8 3.6219 0.2159 2.6724 15 7 1.5124 0.8390 2.9616 16 6 1.8810 1.7357 4.0599 17 1 2.8568 2.1768 3.8570 18 6 0.8355 2.8458 4.1848 19 6 1.2208 3.7826 5.3314 20 6 1.2819 2.9902 6.6389 21 1 0.3061 2.5491 6.8423 22 7 1.6502 3.8873 7.7369 23 6 1.2878 3.5818 9.0216 24 1 0.7307 2.6793 9.2254 25 6 1.6372 4.4316 10.0621 26 7 2.3165 5.5313 9.8138 27 14 1.1435 4.0145 11.8147 28 1 0.3913 2.7340 11.8256 29 1 2.3613 3.8810 12.6537 30 1 0.2843 5.0971 12.3579 31 6 2.3273 1.8800 6.5140 32 6 1.9421 0.9432 5.3674 33 1 -0.3633 -1.0269 0.0405 34 1 -0.3633 0.4783 -0.9096 35 1 -0.3634 0.5486 0.8690 36 1 0.9695 -0.1352 -2.8847 37 1 2.1570 -1.6377 -4.4376 38 1 3.9234 -3.1285 -3.5901 39 1 4.5116 -3.1204 -1.2072 40 1 0.5847 0.7622 2.6888 41 1 0.7923 3.4106 3.2536 42 1 -0.1404 2.4047 4.3878 43 1 2.1966 4.2237 5.1280 44 1 0.4757 4.5733 5.4207 45 1 2.1508 4.6977 7.5539 46 1 2.5604 6.1253 10.5408 47 1 3.3031 2.3212 6.3106 48 1 2.3711 1.3158 7.4456 49 1 0.9663 0.5022 5.5708 50 1 2.6866 0.1521 5.2788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034803486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:25 Heat of formation + Delta-G solvation = -42.990063 kcal Electronic energy + Delta-G solvation = -29735.742183 eV Core-core repulsion = 25727.768604 eV Total energy + Delta-G solvation = -4007.973580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89896 -39.86857 -38.16009 -37.44097 -35.11151 -34.54794 -33.01120 -30.91372 -30.60205 -30.43993 -30.06374 -28.09664 -26.89606 -24.30566 -23.49837 -22.63506 -22.37864 -21.22770 -21.19331 -20.61389 -19.51164 -18.17275 -17.68406 -16.99830 -16.88304 -16.56465 -16.00014 -15.34408 -14.92019 -14.85850 -14.78433 -14.19894 -14.12902 -13.91186 -13.80323 -13.73247 -13.56893 -13.37106 -12.98748 -12.75584 -12.57675 -12.52035 -12.12328 -12.05398 -11.88088 -11.84038 -11.45941 -11.41992 -11.11292 -11.04080 -10.83831 -10.78438 -10.68118 -10.17013 -10.12578 -9.94035 -9.77683 -9.59210 -9.31693 -9.07598 -8.85823 -8.54820 -6.93799 -5.75311 -3.03796 0.86891 0.98047 2.27006 2.39743 3.16774 3.37670 3.43791 3.49386 3.51622 3.79843 4.02427 4.31160 4.42268 4.46573 4.59864 4.66381 4.67423 4.85238 4.89439 4.97481 5.00911 5.05420 5.13924 5.20890 5.25464 5.40118 5.50803 5.55579 5.57447 5.63665 5.66037 5.69784 5.81160 5.85005 5.90909 5.99718 6.00217 6.07456 6.16588 6.20245 6.21221 6.27230 6.45030 6.54217 6.61713 6.71060 6.77629 6.97905 7.14620 7.28277 7.71777 7.99153 8.43490 9.54538 10.13139 10.47521 11.47482 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.001827 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.263267 B =15323.255561 C =15676.851428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 H 0.103 0.897 4 C -0.170 4.170 5 C -0.065 4.065 6 C -0.151 4.151 7 C -0.084 4.084 8 C -0.137 4.137 9 C 0.108 3.892 10 O -0.273 6.273 11 C 0.066 3.934 12 H 0.114 0.886 13 C 0.517 3.483 14 O -0.511 6.511 15 N -0.718 5.718 16 C 0.146 3.854 17 H 0.089 0.911 18 C -0.118 4.118 19 C -0.121 4.121 20 C 0.177 3.823 21 H 0.046 0.954 22 N -0.725 5.725 23 C -0.236 4.236 24 H 0.070 0.930 25 C -0.015 4.015 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 C -0.132 4.132 32 C -0.124 4.124 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.397 0.603 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -14.721 -28.990 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 H 0.121 0.879 4 C -0.171 4.171 5 C -0.083 4.083 6 C -0.169 4.169 7 C -0.102 4.102 8 C -0.155 4.155 9 C 0.062 3.938 10 O -0.186 6.186 11 C 0.006 3.994 12 H 0.131 0.869 13 C 0.300 3.700 14 O -0.385 6.385 15 N -0.371 5.371 16 C 0.043 3.957 17 H 0.107 0.893 18 C -0.157 4.157 19 C -0.159 4.159 20 C 0.067 3.933 21 H 0.064 0.936 22 N -0.366 5.366 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.211 4.211 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.173 4.173 32 C -0.164 4.164 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.232 0.768 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.344 -14.763 -28.400 32.301 hybrid contribution -0.513 0.027 0.860 1.002 sum -4.856 -14.736 -27.540 31.610 Atomic orbital electron populations 1.21797 0.92036 1.02985 1.03141 1.21330 0.97712 0.99785 0.89992 0.87941 1.20672 1.01116 0.99979 0.95295 1.20287 0.99007 0.98186 0.90842 1.21049 0.97920 0.98145 0.99758 1.20903 0.96815 0.98348 0.94087 1.20299 1.02848 1.00096 0.92278 1.19650 0.95465 0.94705 0.83939 1.86970 1.37666 1.75804 1.18117 1.23354 0.87097 0.95023 0.93929 0.86895 1.19924 0.86252 0.80955 0.82823 1.90785 1.18618 1.64265 1.64862 1.46066 1.10205 1.44750 1.36096 1.21183 0.99841 0.89434 0.85278 0.89260 1.21752 0.98217 0.96277 0.99422 1.21757 1.01935 0.97915 0.94339 1.20243 0.95576 0.90278 0.87195 0.93581 1.42432 1.66672 1.25150 1.02312 1.19286 1.28592 1.04933 0.83961 0.91167 1.24741 1.01126 0.97266 0.97962 1.69672 1.43967 1.13473 1.31036 0.86140 0.77620 0.77356 0.85222 1.20596 1.21914 1.21928 1.22230 1.00817 0.97735 0.96561 1.21908 1.01463 0.98654 0.94354 0.91581 0.91036 0.91587 0.85686 0.85390 0.85041 0.85226 0.76812 0.91812 0.91473 0.91918 0.91269 0.78303 0.93603 0.92451 0.91720 0.92195 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.18 37.16 0.34 -0.33 16 2 C -0.07 -0.54 3.24 -90.41 -0.29 -0.83 16 3 H 0.10 0.86 7.92 -51.93 -0.41 0.45 16 4 C -0.17 -1.50 5.69 -104.10 -0.59 -2.09 16 5 C -0.07 -0.46 9.93 -39.72 -0.39 -0.85 16 6 C -0.15 -0.96 10.07 -39.53 -0.40 -1.36 16 7 C -0.08 -0.57 10.02 -39.67 -0.40 -0.97 16 8 C -0.14 -1.22 10.06 -39.30 -0.40 -1.62 16 9 C 0.11 1.16 7.04 -38.95 -0.27 0.89 16 10 O -0.27 -3.53 10.39 -39.24 -0.41 -3.93 16 11 C 0.07 0.65 3.59 -26.98 -0.10 0.56 16 12 H 0.11 0.85 7.89 -51.93 -0.41 0.44 16 13 C 0.52 6.47 7.10 -10.99 -0.08 6.39 16 14 O -0.51 -8.97 16.24 -13.51 -0.22 -9.19 16 15 N -0.72 -7.27 5.07 -53.81 -0.27 -7.55 16 16 C 0.15 1.86 2.45 -67.93 -0.17 1.69 16 17 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 18 C -0.12 -1.37 5.39 -26.73 -0.14 -1.51 16 19 C -0.12 -1.87 5.39 -26.73 -0.14 -2.01 16 20 C 0.18 3.39 2.77 -67.93 -0.19 3.20 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.73 -17.99 5.12 -53.42 -0.27 -18.27 16 23 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 26 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 27 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 31 C -0.13 -2.39 5.50 -26.73 -0.15 -2.54 16 32 C -0.12 -1.81 5.50 -26.73 -0.15 -1.96 16 33 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.23 6.87 -51.93 -0.36 -0.13 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.40 2.69 7.33 -40.82 -0.30 2.39 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 402.30 15.07 6.06 6.06 Total: -1.00 -34.53 402.30 -11.24 -45.77 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.07 Total: 7.77 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -3.76 Total: -10.56 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.18 Total: -53.36 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.63 Total: -13.12 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.53 -11.24 -45.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034803486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.780 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds