Wall clock time and date at job start Wed Apr 1 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.83137 * 2 1 4 4 C 1.51643 * 110.94178 * 236.28710 * 2 1 3 5 5 C 1.37745 * 132.17697 * 46.43301 * 4 2 1 6 6 C 1.38339 * 119.97737 * 180.38149 * 5 4 2 7 7 C 1.38288 * 119.77438 * 359.96099 * 6 5 4 8 8 C 1.37933 * 120.34726 * 359.88603 * 7 6 5 9 9 C 1.38884 * 107.04184 * 226.45787 * 4 2 1 10 10 O 1.36138 * 111.23130 * 358.92770 * 9 4 2 11 11 C 1.43771 * 109.24447 * 19.01704 * 10 9 4 12 12 H 1.09001 * 110.74653 * 90.58066 * 11 10 9 13 13 C 1.50697 * 110.75229 * 213.93605 * 11 10 9 14 14 O 1.21284 * 119.99865 * 358.36176 * 13 11 10 15 15 N 1.34779 * 120.00053 * 178.36377 * 13 11 10 16 16 C 1.46494 * 119.99823 * 179.97438 * 15 13 11 17 17 H 1.08996 * 109.47551 * 35.00478 * 16 15 13 18 18 C 1.53003 * 109.47095 * 155.00107 * 16 15 13 19 19 C 1.53000 * 109.47298 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47080 * 300.00069 * 19 18 16 21 21 H 1.09003 * 109.47159 * 300.00016 * 20 19 18 22 22 N 1.46497 * 109.47234 * 180.02562 * 20 19 18 23 23 C 1.36929 * 120.00331 * 154.99839 * 22 20 19 24 24 H 1.08004 * 120.00081 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00430 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99830 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00532 * 180.02562 * 25 23 22 28 28 H 1.48510 * 109.46815 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47596 * 119.99857 * 27 25 23 30 30 H 1.48503 * 109.47435 * 240.00493 * 27 25 23 31 31 C 1.53003 * 109.47111 * 59.99817 * 20 19 18 32 32 C 1.53000 * 109.47298 * 300.00050 * 31 20 19 33 33 H 1.09002 * 109.47153 * 182.25913 * 1 2 3 34 34 H 1.09001 * 109.46832 * 62.26104 * 1 2 3 35 35 H 1.09004 * 109.47261 * 302.26085 * 1 2 3 36 36 H 1.08000 * 120.00656 * 0.35470 * 5 4 2 37 37 H 1.08006 * 120.11438 * 179.97438 * 6 5 4 38 38 H 1.07999 * 119.82795 * 179.85768 * 7 6 5 39 39 H 1.07993 * 119.88370 * 179.97438 * 8 7 6 40 40 H 0.96999 * 120.00139 * 0.02562 * 15 13 11 41 41 H 1.08998 * 109.47302 * 300.00257 * 18 16 15 42 42 H 1.09003 * 109.46946 * 59.99991 * 18 16 15 43 43 H 1.08996 * 109.46915 * 59.99765 * 19 18 16 44 44 H 1.09003 * 109.47398 * 180.02562 * 19 18 16 45 45 H 0.97001 * 119.99775 * 334.99623 * 22 20 19 46 46 H 0.97005 * 120.00448 * 179.97438 * 26 25 23 47 47 H 1.08996 * 109.46618 * 60.00260 * 31 20 19 48 48 H 1.09000 * 109.46802 * 179.97438 * 31 20 19 49 49 H 1.08996 * 109.46915 * 300.00235 * 32 31 20 50 50 H 1.08998 * 109.46908 * 180.02562 * 32 31 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0720 -0.7861 -1.1781 5 6 1.7455 -0.7898 -2.5163 6 6 2.4115 -1.6326 -3.3879 7 6 3.4045 -2.4685 -2.9108 8 6 3.7353 -2.4642 -1.5717 9 6 3.0718 -1.6162 -0.6881 10 8 3.2484 -1.4385 0.6500 11 6 2.0829 -0.8026 1.2015 12 1 1.3589 -1.5460 1.5352 13 6 2.4621 0.1202 2.3309 14 8 3.6219 0.2159 2.6724 15 7 1.5124 0.8390 2.9616 16 6 1.8810 1.7357 4.0599 17 1 2.8568 2.1768 3.8570 18 6 0.8355 2.8458 4.1848 19 6 1.2208 3.7826 5.3314 20 6 1.2819 2.9902 6.6389 21 1 0.3061 2.5491 6.8423 22 7 1.6502 3.8873 7.7369 23 6 1.2878 3.5818 9.0216 24 1 0.7307 2.6793 9.2254 25 6 1.6372 4.4316 10.0621 26 7 2.3165 5.5313 9.8138 27 14 1.1435 4.0145 11.8147 28 1 0.3913 2.7340 11.8256 29 1 2.3613 3.8810 12.6537 30 1 0.2843 5.0971 12.3579 31 6 2.3273 1.8800 6.5140 32 6 1.9421 0.9432 5.3674 33 1 -0.3633 -1.0269 0.0405 34 1 -0.3633 0.4783 -0.9096 35 1 -0.3634 0.5486 0.8690 36 1 0.9695 -0.1352 -2.8847 37 1 2.1570 -1.6377 -4.4376 38 1 3.9234 -3.1285 -3.5901 39 1 4.5116 -3.1204 -1.2072 40 1 0.5847 0.7622 2.6888 41 1 0.7923 3.4106 3.2536 42 1 -0.1404 2.4047 4.3878 43 1 2.1966 4.2237 5.1280 44 1 0.4757 4.5733 5.4207 45 1 2.1508 4.6977 7.5539 46 1 2.5604 6.1253 10.5408 47 1 3.3031 2.3212 6.3106 48 1 2.3711 1.3158 7.4456 49 1 0.9663 0.5022 5.5708 50 1 2.6866 0.1521 5.2788 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034803486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:24 Heat of formation + Delta-G solvation = -64.419386 kcal Electronic energy + Delta-G solvation = -29736.671428 eV Core-core repulsion = 25727.768604 eV Total energy + Delta-G solvation = -4008.902825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.61240 -40.88532 -39.31322 -38.23089 -36.44791 -35.43754 -34.50060 -32.52144 -31.70222 -31.17578 -30.89234 -29.19778 -27.92149 -25.64222 -24.69363 -23.66686 -23.28371 -22.45988 -21.76962 -21.63771 -20.89538 -19.21830 -18.83667 -18.40509 -17.61386 -17.30377 -17.04718 -16.71901 -16.13941 -15.84237 -15.56656 -15.38691 -15.37094 -15.05364 -14.78366 -14.67845 -14.54057 -14.41069 -14.00944 -13.99379 -13.46614 -13.24887 -13.11911 -13.09508 -12.97122 -12.86597 -12.73368 -12.42760 -12.37195 -12.31206 -12.11067 -12.03205 -11.97106 -11.66555 -11.63263 -11.47585 -11.21982 -10.95683 -10.83212 -10.15346 -9.87120 -9.18301 -8.99258 -7.93583 -5.21529 0.30699 0.39309 1.34382 1.46507 1.47499 1.54507 1.57158 2.43802 2.56545 2.76776 3.17780 3.32333 3.39482 3.65902 3.75757 3.79419 3.86279 3.87538 3.89534 4.16886 4.23786 4.27463 4.36412 4.38728 4.41426 4.48177 4.50703 4.52614 4.59061 4.64139 4.64423 4.82223 4.88034 4.99243 4.99958 5.08303 5.09311 5.12340 5.25091 5.26856 5.28898 5.36996 5.40325 5.45096 5.51032 5.54763 5.55352 5.63246 5.64031 6.15293 6.29415 6.42915 7.09431 7.34774 8.12864 8.34674 9.30315 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.001827 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.263267 B =15323.255561 C =15676.851428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 H 0.093 0.907 4 C -0.177 4.177 5 C -0.068 4.068 6 C -0.146 4.146 7 C -0.085 4.085 8 C -0.155 4.155 9 C 0.069 3.931 10 O -0.312 6.312 11 C 0.066 3.934 12 H 0.138 0.862 13 C 0.516 3.484 14 O -0.571 6.571 15 N -0.696 5.696 16 C 0.152 3.848 17 H 0.062 0.938 18 C -0.104 4.104 19 C -0.114 4.114 20 C 0.172 3.828 21 H 0.051 0.949 22 N -0.740 5.740 23 C -0.234 4.234 24 H 0.076 0.924 25 C -0.080 4.080 26 N -0.971 5.971 27 Si 0.970 3.030 28 H -0.265 1.265 29 H -0.298 1.298 30 H -0.292 1.292 31 C -0.124 4.124 32 C -0.114 4.114 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.419 0.581 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.371 0.629 46 H 0.249 0.751 47 H 0.036 0.964 48 H 0.040 0.960 49 H 0.082 0.918 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 -15.788 -31.685 36.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 H 0.111 0.889 4 C -0.177 4.177 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.103 4.103 8 C -0.173 4.173 9 C 0.024 3.976 10 O -0.226 6.226 11 C 0.006 3.994 12 H 0.156 0.844 13 C 0.302 3.698 14 O -0.449 6.449 15 N -0.349 5.349 16 C 0.048 3.952 17 H 0.081 0.919 18 C -0.142 4.142 19 C -0.153 4.153 20 C 0.064 3.936 21 H 0.069 0.931 22 N -0.378 5.378 23 C -0.366 4.366 24 H 0.094 0.906 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.800 3.200 28 H -0.189 1.189 29 H -0.225 1.225 30 H -0.220 1.220 31 C -0.165 4.165 32 C -0.153 4.153 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.146 0.854 40 H 0.258 0.742 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.202 0.798 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.100 0.900 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.519 -15.877 -31.147 35.760 hybrid contribution 0.500 0.288 1.585 1.687 sum -7.019 -15.590 -29.562 34.150 Atomic orbital electron populations 1.21837 0.89214 1.03893 1.04630 1.21322 0.99782 0.98514 0.88363 0.88876 1.20897 1.00724 0.99755 0.96363 1.20660 0.99447 0.98418 0.90069 1.21485 0.96846 0.96921 1.01148 1.21253 0.96955 0.98664 0.93396 1.20570 1.03135 1.00346 0.93291 1.20016 0.97408 0.96747 0.83412 1.86904 1.39414 1.76616 1.19643 1.23502 0.86869 0.95267 0.93723 0.84434 1.20488 0.85552 0.80743 0.83023 1.90761 1.21185 1.66245 1.66732 1.45761 1.11057 1.43401 1.34716 1.20915 0.99421 0.89863 0.85002 0.91935 1.21660 0.98520 0.95119 0.98908 1.21647 1.01573 0.98304 0.93748 1.20511 0.95508 0.90120 0.87473 0.93074 1.42688 1.66556 1.25594 1.03012 1.19673 1.27174 1.04494 0.85274 0.90583 1.25549 1.02129 0.97601 1.01913 1.69828 1.45937 1.14710 1.31787 0.85111 0.76958 0.77576 0.80384 1.18940 1.22521 1.21965 1.22040 0.99602 0.97767 0.97058 1.21777 1.01986 0.97570 0.93943 0.90975 0.89698 0.89943 0.83100 0.82445 0.82535 0.85438 0.74211 0.88937 0.88794 0.93099 0.91132 0.79765 0.94187 0.94549 0.94086 0.89977 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.18 71.98 0.66 -0.12 16 2 C -0.06 -0.83 3.24 -10.66 -0.03 -0.87 16 3 H 0.09 1.43 7.92 -2.39 -0.02 1.41 16 4 C -0.18 -2.87 5.69 -19.53 -0.11 -2.98 16 5 C -0.07 -0.77 9.93 22.18 0.22 -0.55 16 6 C -0.15 -1.43 10.07 22.31 0.22 -1.21 16 7 C -0.08 -1.01 10.02 22.21 0.22 -0.79 16 8 C -0.15 -2.78 10.06 22.45 0.23 -2.56 16 9 C 0.07 1.50 7.04 22.68 0.16 1.66 16 10 O -0.31 -8.40 10.39 -76.90 -0.80 -9.20 16 11 C 0.07 1.26 3.59 30.43 0.11 1.37 16 12 H 0.14 1.84 7.89 -2.39 -0.02 1.82 16 13 C 0.52 12.78 7.10 87.66 0.62 13.40 16 14 O -0.57 -20.96 16.24 15.18 0.25 -20.71 16 15 N -0.70 -12.64 5.07 -442.53 -2.24 -14.89 16 16 C 0.15 3.68 2.45 45.00 0.11 3.79 16 17 H 0.06 1.90 7.58 -2.39 -0.02 1.89 16 18 C -0.10 -2.08 5.39 30.60 0.16 -1.91 16 19 C -0.11 -3.40 5.39 30.60 0.16 -3.23 16 20 C 0.17 6.54 2.77 45.00 0.12 6.67 16 21 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 22 N -0.74 -37.36 5.12 -322.93 -1.65 -39.01 16 23 C -0.23 -13.04 9.93 84.03 0.83 -12.21 16 24 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 25 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 26 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 27 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 30 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 31 C -0.12 -4.57 5.50 30.60 0.17 -4.40 16 32 C -0.11 -3.23 5.50 30.60 0.17 -3.06 16 33 H 0.07 0.36 8.10 -2.39 -0.02 0.34 16 34 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.08 0.19 6.87 -2.38 -0.02 0.17 16 36 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 37 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 39 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.42 4.04 7.33 -92.71 -0.68 3.36 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 46 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -79.99 402.30 1.91 -78.08 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.46 Total: 28.26 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.50 Total: -11.19 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -3.61 Total: -113.96 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.55 Total: -29.91 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -79.99 1.91 -78.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034803486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.660 kcal (2) G-P(sol) polarization free energy of solvation -79.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds