Wall clock time and date at job start Wed Apr 1 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.49968 * 2 1 4 4 C 1.52758 * 109.59045 * 240.04255 * 2 1 3 5 5 N 1.46932 * 109.00492 * 185.53713 * 4 2 1 6 6 C 1.34774 * 120.62811 * 233.58139 * 5 4 2 7 7 O 1.21552 * 120.00238 * 5.44041 * 6 5 4 8 8 C 1.47853 * 119.99789 * 185.43579 * 6 5 4 9 9 C 1.39592 * 120.22293 * 36.43638 * 8 6 5 10 10 C 1.37754 * 119.73771 * 180.02562 * 9 8 6 11 11 C 1.38799 * 120.51319 * 0.05266 * 10 9 8 12 12 C 1.38080 * 120.00206 * 359.78428 * 11 10 9 13 13 C 1.38332 * 120.01687 * 0.24364 * 12 11 10 14 14 C 1.50770 * 121.33773 * 180.29344 * 12 11 10 15 15 C 1.52962 * 109.78001 * 342.98134 * 14 12 11 16 16 O 1.43203 * 108.46998 * 49.21960 * 15 14 12 17 17 C 1.42712 * 113.12488 * 289.24535 * 16 15 14 18 18 C 1.46926 * 118.73989 * 53.31861 * 5 4 2 19 19 C 1.53197 * 108.76849 * 306.63530 * 18 5 4 20 20 C 1.53039 * 109.31373 * 54.64090 * 19 18 5 21 21 H 1.08997 * 109.46204 * 58.65201 * 20 19 18 22 22 N 1.46498 * 109.46181 * 178.61163 * 20 19 18 23 23 C 1.36934 * 119.99897 * 274.99702 * 22 20 19 24 24 H 1.08004 * 120.00238 * 0.02562 * 23 22 20 25 25 C 1.38815 * 120.00139 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00156 * 179.97438 * 25 23 22 27 27 Si 1.86808 * 119.99864 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47058 * 89.99892 * 27 25 23 29 29 H 1.48500 * 109.47006 * 209.99923 * 27 25 23 30 30 H 1.48507 * 109.46806 * 329.99710 * 27 25 23 31 31 H 1.09001 * 109.47241 * 299.93715 * 1 2 3 32 32 H 1.08999 * 109.47312 * 59.93664 * 1 2 3 33 33 H 1.09003 * 109.47407 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.51114 * 65.66074 * 4 2 1 35 35 H 1.08998 * 109.43694 * 305.37165 * 4 2 1 36 36 H 1.08002 * 120.13398 * 0.08332 * 9 8 6 37 37 H 1.08005 * 119.73968 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.90818 * 179.86243 * 13 12 11 39 39 H 1.08997 * 109.41944 * 222.88353 * 14 12 11 40 40 H 1.09003 * 109.42002 * 103.07603 * 14 12 11 41 41 H 1.09005 * 109.63425 * 168.91357 * 15 14 12 42 42 H 1.08997 * 109.63749 * 289.52383 * 15 14 12 43 43 H 1.09000 * 109.33786 * 291.63153 * 17 16 15 44 44 H 1.09002 * 109.20473 * 172.03335 * 17 16 15 45 45 H 1.08996 * 109.58840 * 66.42121 * 18 5 4 46 46 H 1.09000 * 109.58645 * 186.85863 * 18 5 4 47 47 H 1.09003 * 109.49433 * 174.58763 * 19 18 5 48 48 H 1.08998 * 109.50215 * 294.68344 * 19 18 5 49 49 H 0.96998 * 120.00017 * 95.00036 * 22 20 19 50 50 H 0.97001 * 119.99914 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0421 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1688 6 6 4.2819 -0.3847 -2.1770 7 8 3.7814 0.2006 -3.1175 8 6 5.7427 -0.6097 -2.1390 9 6 6.2576 -1.7945 -1.6099 10 6 7.6203 -1.9935 -1.5790 11 6 8.4853 -1.0247 -2.0687 12 6 7.9815 0.1477 -2.5963 13 6 6.6150 0.3593 -2.6323 14 6 8.8932 1.2172 -3.1424 15 6 10.3188 0.9898 -2.6370 16 8 10.6663 -0.3813 -2.8610 17 6 9.9686 -1.2837 -2.0034 18 6 4.1059 -1.4256 0.0317 19 6 3.5708 -0.6940 1.2667 20 6 2.0407 -0.7227 1.2486 21 1 1.6971 -1.7570 1.2356 22 7 1.5258 -0.0527 2.4453 23 6 1.3943 -0.7492 3.6169 24 1 1.6707 -1.7925 3.6589 25 6 0.9069 -0.1143 4.7510 26 7 0.7801 -0.7839 5.8770 27 14 0.4296 1.6904 4.6787 28 1 -1.0014 1.8091 4.3000 29 1 0.6427 2.3125 6.0102 30 1 1.2683 2.3840 3.6683 31 1 -0.3634 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7653 -0.1498 -2.1345 35 1 1.6032 -1.7151 -1.2973 36 1 5.5902 -2.5525 -1.2273 37 1 8.0187 -2.9103 -1.1700 38 1 6.2229 1.2779 -3.0433 39 1 8.5431 2.1951 -2.8120 40 1 8.8845 1.1792 -4.2317 41 1 11.0078 1.6359 -3.1811 42 1 10.3691 1.2109 -1.5709 43 1 10.3140 -1.1475 -0.9785 44 1 10.1706 -2.3072 -2.3193 45 1 3.8385 -2.4808 0.0877 46 1 5.1901 -1.3230 -0.0125 47 1 3.9333 -1.1884 2.1680 48 1 3.9154 0.3400 1.2548 49 1 1.2779 0.8843 2.4077 50 1 0.4398 -0.3400 6.6695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036100671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:07 Heat of formation + Delta-G solvation = -37.816378 kcal Electronic energy + Delta-G solvation = -30476.201152 eV Core-core repulsion = 26468.451920 eV Total energy + Delta-G solvation = -4007.749232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.00200 -39.94944 -38.06463 -37.38217 -34.88804 -33.54509 -33.04881 -31.97985 -31.57460 -29.91241 -29.82538 -27.26732 -25.94887 -25.03478 -24.29325 -22.80177 -22.65809 -21.62953 -21.12636 -19.97502 -19.24645 -17.62785 -17.26021 -17.20465 -16.53135 -16.21559 -15.91979 -15.33657 -15.09171 -14.97376 -14.60265 -14.42687 -14.20479 -13.88169 -13.80781 -13.60502 -13.36381 -13.27850 -12.99499 -12.77874 -12.63948 -12.54590 -12.36459 -12.08088 -11.82098 -11.63043 -11.45332 -11.39249 -11.12454 -11.06756 -10.89145 -10.73896 -10.55737 -10.27507 -10.19903 -9.85555 -9.79918 -9.62191 -9.12556 -8.99871 -8.85400 -8.57381 -7.31166 -5.81824 -3.17200 0.61961 1.02157 2.61426 2.93163 3.33797 3.37085 3.41347 3.42283 3.49110 4.20245 4.24479 4.37429 4.45453 4.54780 4.67401 4.75420 4.85157 4.92988 4.96970 5.01676 5.05799 5.12457 5.14831 5.21278 5.25608 5.37712 5.41804 5.46462 5.48943 5.57029 5.59079 5.63065 5.69267 5.81294 5.91129 5.95383 5.99967 6.04992 6.08042 6.13699 6.24713 6.24946 6.37853 6.46889 6.55223 6.64467 6.66081 6.73867 6.90486 7.38466 7.93576 8.09817 8.37334 9.15506 9.88441 10.08439 11.36446 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002592 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.810554 B =10800.114491 C =11570.289430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.121 3.879 5 N -0.599 5.599 6 C 0.559 3.441 7 O -0.543 6.543 8 C -0.121 4.121 9 C -0.090 4.090 10 C -0.118 4.118 11 C -0.102 4.102 12 C -0.082 4.082 13 C -0.062 4.062 14 C -0.115 4.115 15 C 0.058 3.942 16 O -0.375 6.375 17 C 0.099 3.901 18 C 0.094 3.906 19 C -0.152 4.152 20 C 0.189 3.811 21 H 0.057 0.943 22 N -0.745 5.745 23 C -0.242 4.242 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.002 -0.493 -18.269 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.347 3.653 7 O -0.422 6.422 8 C -0.124 4.124 9 C -0.108 4.108 10 C -0.136 4.136 11 C -0.102 4.102 12 C -0.082 4.082 13 C -0.081 4.081 14 C -0.152 4.152 15 C -0.019 4.019 16 O -0.294 6.294 17 C 0.023 3.977 18 C -0.029 4.029 19 C -0.193 4.193 20 C 0.079 3.921 21 H 0.075 0.925 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.712 3.288 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.828 -0.432 -18.692 25.155 hybrid contribution -0.682 1.364 0.531 1.615 sum 16.146 0.932 -18.161 24.319 Atomic orbital electron populations 1.21665 0.94028 1.02191 1.01590 1.21710 0.96639 1.00142 0.94946 0.91336 1.21627 0.78178 1.01054 0.99287 1.48055 1.07128 1.60040 1.17872 1.18320 0.86218 0.78390 0.82356 1.90757 1.74994 1.41778 1.34678 1.19870 0.93215 0.96498 1.02801 1.21458 0.95667 0.96738 0.96936 1.20926 0.92824 0.99181 1.00676 1.20435 0.96841 0.94292 0.98648 1.19408 0.93660 0.95325 0.99830 1.21094 0.91753 0.98845 0.96393 1.21138 0.94636 0.97521 1.01930 1.22657 0.95168 0.83290 1.00746 1.88078 1.64544 1.16221 1.60522 1.21507 0.86630 0.94645 0.94960 1.22331 0.98718 0.97375 0.84454 1.22663 0.99895 1.00490 0.96264 1.20174 0.90482 0.96036 0.85412 0.92455 1.42777 1.78157 1.10082 1.07666 1.19043 1.36339 0.95682 0.86114 0.89204 1.24656 1.01350 0.97385 0.95625 1.69694 1.52068 1.35678 1.00670 0.86597 0.78601 0.86795 0.76805 1.21050 1.21787 1.20392 0.91439 0.93503 0.92497 0.89183 0.91191 0.84440 0.85033 0.85019 0.89399 0.89437 0.88110 0.92379 0.91245 0.87424 0.91075 0.89170 0.90008 0.92320 0.80627 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.03 37.16 0.34 -1.70 16 2 C -0.11 -1.76 2.44 -90.72 -0.22 -1.98 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 4 C 0.12 1.67 5.70 -3.93 -0.02 1.65 16 5 N -0.60 -8.19 2.98 -174.14 -0.52 -8.71 16 6 C 0.56 8.20 7.37 -12.33 -0.09 8.11 16 7 O -0.54 -9.58 16.27 5.32 0.09 -9.49 16 8 C -0.12 -1.49 5.25 -105.03 -0.55 -2.04 16 9 C -0.09 -0.90 7.36 -39.25 -0.29 -1.19 16 10 C -0.12 -1.02 9.65 -39.55 -0.38 -1.40 16 11 C -0.10 -0.93 5.81 -104.46 -0.61 -1.54 16 12 C -0.08 -0.82 5.77 -104.61 -0.60 -1.42 16 13 C -0.06 -0.72 9.24 -39.12 -0.36 -1.08 16 14 C -0.12 -0.87 6.00 -27.87 -0.17 -1.04 16 15 C 0.06 0.40 6.85 37.14 0.25 0.65 16 16 O -0.38 -3.33 10.80 -35.23 -0.38 -3.71 16 17 C 0.10 0.73 6.65 36.01 0.24 0.97 16 18 C 0.09 1.17 4.80 -3.71 -0.02 1.15 16 19 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 20 C 0.19 3.36 2.20 -67.89 -0.15 3.21 16 21 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 22 N -0.75 -16.63 4.21 -53.38 -0.22 -16.85 16 23 C -0.24 -6.48 10.41 -15.06 -0.16 -6.64 16 24 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 27 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 31 H 0.07 1.14 7.36 -51.93 -0.38 0.76 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.14 1.21 6.18 -52.49 -0.32 0.89 16 37 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.13 1.50 8.02 -52.48 -0.42 1.08 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 46 H 0.09 1.00 4.52 -51.93 -0.23 0.77 16 47 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.36 8.12 5.37 -40.82 -0.22 7.91 16 50 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -33.13 389.02 -10.02 -43.15 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.87 Total: 7.41 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.04 Total: -6.80 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.03 Total: -53.41 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.29 Total: -13.21 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.13 -10.02 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036100671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.334 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds