Wall clock time and date at job start Wed Apr 1 2020 03:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.49968 * 2 1 4 4 C 1.52758 * 109.59045 * 240.04255 * 2 1 3 5 5 N 1.46932 * 109.00492 * 185.53713 * 4 2 1 6 6 C 1.34774 * 120.62811 * 233.58139 * 5 4 2 7 7 O 1.21552 * 120.00238 * 5.44041 * 6 5 4 8 8 C 1.47853 * 119.99789 * 185.43579 * 6 5 4 9 9 C 1.39592 * 120.22293 * 36.43638 * 8 6 5 10 10 C 1.37754 * 119.73771 * 180.02562 * 9 8 6 11 11 C 1.38799 * 120.51319 * 0.05266 * 10 9 8 12 12 C 1.38080 * 120.00206 * 359.78428 * 11 10 9 13 13 C 1.38332 * 120.01687 * 0.24364 * 12 11 10 14 14 C 1.50770 * 121.33773 * 180.29344 * 12 11 10 15 15 C 1.52962 * 109.78001 * 342.98134 * 14 12 11 16 16 O 1.43203 * 108.46998 * 49.21960 * 15 14 12 17 17 C 1.42712 * 113.12488 * 289.24535 * 16 15 14 18 18 C 1.46926 * 118.73989 * 53.31861 * 5 4 2 19 19 C 1.53197 * 108.76849 * 306.63530 * 18 5 4 20 20 C 1.53039 * 109.31373 * 54.64090 * 19 18 5 21 21 H 1.08997 * 109.46204 * 58.65201 * 20 19 18 22 22 N 1.46498 * 109.46181 * 178.61163 * 20 19 18 23 23 C 1.36934 * 119.99897 * 274.99702 * 22 20 19 24 24 H 1.08004 * 120.00238 * 0.02562 * 23 22 20 25 25 C 1.38815 * 120.00139 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00156 * 179.97438 * 25 23 22 27 27 Si 1.86808 * 119.99864 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47058 * 89.99892 * 27 25 23 29 29 H 1.48500 * 109.47006 * 209.99923 * 27 25 23 30 30 H 1.48507 * 109.46806 * 329.99710 * 27 25 23 31 31 H 1.09001 * 109.47241 * 299.93715 * 1 2 3 32 32 H 1.08999 * 109.47312 * 59.93664 * 1 2 3 33 33 H 1.09003 * 109.47407 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.51114 * 65.66074 * 4 2 1 35 35 H 1.08998 * 109.43694 * 305.37165 * 4 2 1 36 36 H 1.08002 * 120.13398 * 0.08332 * 9 8 6 37 37 H 1.08005 * 119.73968 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.90818 * 179.86243 * 13 12 11 39 39 H 1.08997 * 109.41944 * 222.88353 * 14 12 11 40 40 H 1.09003 * 109.42002 * 103.07603 * 14 12 11 41 41 H 1.09005 * 109.63425 * 168.91357 * 15 14 12 42 42 H 1.08997 * 109.63749 * 289.52383 * 15 14 12 43 43 H 1.09000 * 109.33786 * 291.63153 * 17 16 15 44 44 H 1.09002 * 109.20473 * 172.03335 * 17 16 15 45 45 H 1.08996 * 109.58840 * 66.42121 * 18 5 4 46 46 H 1.09000 * 109.58645 * 186.85863 * 18 5 4 47 47 H 1.09003 * 109.49433 * 174.58763 * 19 18 5 48 48 H 1.08998 * 109.50215 * 294.68344 * 19 18 5 49 49 H 0.96998 * 120.00017 * 95.00036 * 22 20 19 50 50 H 0.97001 * 119.99914 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0421 -0.7187 -1.2469 5 7 3.5053 -0.8284 -1.1688 6 6 4.2819 -0.3847 -2.1770 7 8 3.7814 0.2006 -3.1175 8 6 5.7427 -0.6097 -2.1390 9 6 6.2576 -1.7945 -1.6099 10 6 7.6203 -1.9935 -1.5790 11 6 8.4853 -1.0247 -2.0687 12 6 7.9815 0.1477 -2.5963 13 6 6.6150 0.3593 -2.6323 14 6 8.8932 1.2172 -3.1424 15 6 10.3188 0.9898 -2.6370 16 8 10.6663 -0.3813 -2.8610 17 6 9.9686 -1.2837 -2.0034 18 6 4.1059 -1.4256 0.0317 19 6 3.5708 -0.6940 1.2667 20 6 2.0407 -0.7227 1.2486 21 1 1.6971 -1.7570 1.2356 22 7 1.5258 -0.0527 2.4453 23 6 1.3943 -0.7492 3.6169 24 1 1.6707 -1.7925 3.6589 25 6 0.9069 -0.1143 4.7510 26 7 0.7801 -0.7839 5.8770 27 14 0.4296 1.6904 4.6787 28 1 -1.0014 1.8091 4.3000 29 1 0.6427 2.3125 6.0102 30 1 1.2683 2.3840 3.6683 31 1 -0.3634 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7653 -0.1498 -2.1345 35 1 1.6032 -1.7151 -1.2973 36 1 5.5902 -2.5525 -1.2273 37 1 8.0187 -2.9103 -1.1700 38 1 6.2229 1.2779 -3.0433 39 1 8.5431 2.1951 -2.8120 40 1 8.8845 1.1792 -4.2317 41 1 11.0078 1.6359 -3.1811 42 1 10.3691 1.2109 -1.5709 43 1 10.3140 -1.1475 -0.9785 44 1 10.1706 -2.3072 -2.3193 45 1 3.8385 -2.4808 0.0877 46 1 5.1901 -1.3230 -0.0125 47 1 3.9333 -1.1884 2.1680 48 1 3.9154 0.3400 1.2548 49 1 1.2779 0.8843 2.4077 50 1 0.4398 -0.3400 6.6695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036100671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:05 Heat of formation + Delta-G solvation = -58.016311 kcal Electronic energy + Delta-G solvation = -30477.077086 eV Core-core repulsion = 26468.451920 eV Total energy + Delta-G solvation = -4008.625167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.91266 -40.83380 -39.22270 -38.25778 -36.37379 -34.73071 -34.00107 -33.34359 -32.72725 -31.53314 -30.50847 -28.24814 -27.17392 -26.20552 -25.05561 -24.20032 -23.47394 -23.00462 -22.10046 -21.23416 -20.32760 -19.45902 -18.24000 -17.90193 -17.36494 -17.17880 -16.79357 -16.55416 -16.25670 -16.06743 -15.83963 -15.46490 -15.25002 -15.13555 -14.89823 -14.64096 -14.54390 -14.28994 -14.15998 -14.01374 -13.73951 -13.48965 -13.30776 -13.25398 -13.05853 -12.96844 -12.84471 -12.48352 -12.36649 -12.16656 -12.10973 -11.97778 -11.90292 -11.76641 -11.67758 -11.20405 -11.11762 -10.91134 -10.67669 -9.91736 -9.74295 -9.60610 -9.26380 -8.00572 -5.32274 -0.19479 0.27968 1.37209 1.38285 1.45394 1.58621 1.89037 2.48299 2.62954 2.92845 3.29259 3.33633 3.53381 3.60201 3.67153 3.74876 3.81810 3.93603 4.00344 4.02923 4.13567 4.25059 4.27061 4.32016 4.38817 4.42460 4.48902 4.53891 4.59191 4.69596 4.72384 4.75079 4.78764 4.80258 4.84215 4.90450 4.92244 4.98079 5.05959 5.11641 5.20857 5.23658 5.29303 5.35236 5.43447 5.45350 5.57109 5.79861 5.82940 6.12076 6.23671 6.28453 6.98872 7.09406 7.86334 8.04514 9.20900 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014750 B = 0.002592 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.810554 B =10800.114491 C =11570.289430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.058 0.942 4 C 0.125 3.875 5 N -0.598 5.598 6 C 0.557 3.443 7 O -0.581 6.581 8 C -0.143 4.143 9 C -0.092 4.092 10 C -0.112 4.112 11 C -0.103 4.103 12 C -0.092 4.092 13 C -0.077 4.077 14 C -0.116 4.116 15 C 0.057 3.943 16 O -0.393 6.393 17 C 0.096 3.904 18 C 0.103 3.897 19 C -0.144 4.144 20 C 0.183 3.817 21 H 0.054 0.946 22 N -0.748 5.748 23 C -0.216 4.216 24 H 0.064 0.936 25 C -0.062 4.062 26 N -0.983 5.983 27 Si 0.945 3.055 28 H -0.280 1.280 29 H -0.299 1.299 30 H -0.259 1.259 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.126 0.874 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.047 0.953 49 H 0.361 0.639 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.763 -0.754 -19.684 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.076 0.924 4 C 0.002 3.998 5 N -0.329 5.329 6 C 0.348 3.652 7 O -0.462 6.462 8 C -0.146 4.146 9 C -0.111 4.111 10 C -0.130 4.130 11 C -0.104 4.104 12 C -0.092 4.092 13 C -0.096 4.096 14 C -0.153 4.153 15 C -0.020 4.020 16 O -0.312 6.312 17 C 0.020 3.980 18 C -0.019 4.019 19 C -0.185 4.185 20 C 0.075 3.925 21 H 0.072 0.928 22 N -0.390 5.390 23 C -0.347 4.347 24 H 0.082 0.918 25 C -0.253 4.253 26 N -0.634 5.634 27 Si 0.774 3.226 28 H -0.207 1.207 29 H -0.226 1.226 30 H -0.184 1.184 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.169 0.831 37 H 0.182 0.818 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.144 0.856 45 H 0.112 0.888 46 H 0.127 0.873 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.194 0.806 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.614 -0.696 -20.159 27.447 hybrid contribution -1.149 1.369 0.897 2.000 sum 17.464 0.673 -19.262 26.009 Atomic orbital electron populations 1.21636 0.93490 1.02532 1.01574 1.21583 0.97056 0.99360 0.94393 0.92386 1.21581 0.78517 1.01737 0.97934 1.48099 1.07046 1.59771 1.17977 1.18718 0.87240 0.77469 0.81816 1.90727 1.75874 1.43521 1.36118 1.19808 0.91759 0.98043 1.04981 1.21628 0.96688 0.96065 0.96686 1.21289 0.92093 1.00069 0.99565 1.20796 0.98160 0.93840 0.97560 1.19684 0.93261 0.96411 0.99820 1.21131 0.92652 0.98707 0.97125 1.21197 0.94885 0.97349 1.01853 1.22792 0.94863 0.82878 1.01422 1.88058 1.64846 1.17116 1.61150 1.21705 0.85181 0.95345 0.95757 1.22358 0.99620 0.97784 0.82144 1.22479 0.98158 1.00261 0.97607 1.20417 0.91679 0.95714 0.84727 0.92789 1.42808 1.78483 1.10027 1.07693 1.19009 1.33634 0.94701 0.87406 0.91814 1.25363 1.02795 1.01691 0.95478 1.69858 1.54527 1.37542 1.01502 0.85555 0.78556 0.81851 0.76656 1.20662 1.22637 1.18388 0.93630 0.91308 0.92000 0.89568 0.89357 0.83054 0.81836 0.86043 0.88530 0.89483 0.86351 0.91757 0.89684 0.85630 0.88834 0.87312 0.91347 0.93420 0.80578 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.03 71.98 0.65 -3.17 16 2 C -0.10 -3.07 2.44 -10.86 -0.03 -3.10 16 3 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 4 C 0.12 3.24 5.70 86.22 0.49 3.73 16 5 N -0.60 -15.44 2.98 -823.13 -2.45 -17.89 16 6 C 0.56 15.96 7.37 86.79 0.64 16.60 16 7 O -0.58 -20.56 16.27 -3.88 -0.06 -20.62 16 8 C -0.14 -3.38 5.25 -20.13 -0.11 -3.48 16 9 C -0.09 -1.63 7.36 22.48 0.17 -1.47 16 10 C -0.11 -1.58 9.65 22.29 0.22 -1.36 16 11 C -0.10 -1.62 5.81 -19.76 -0.11 -1.73 16 12 C -0.09 -1.70 5.77 -19.86 -0.11 -1.81 16 13 C -0.08 -1.75 9.24 22.57 0.21 -1.54 16 14 C -0.12 -1.60 6.00 29.86 0.18 -1.43 16 15 C 0.06 0.66 6.85 71.97 0.49 1.15 16 16 O -0.39 -6.02 10.80 -148.98 -1.61 -7.62 16 17 C 0.10 1.13 6.65 71.24 0.47 1.60 16 18 C 0.10 2.35 4.80 86.36 0.41 2.76 16 19 C -0.14 -4.44 5.66 30.67 0.17 -4.26 16 20 C 0.18 6.34 2.20 45.02 0.10 6.44 16 21 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 22 N -0.75 -33.07 4.21 -322.81 -1.36 -34.43 16 23 C -0.22 -11.71 10.41 84.03 0.87 -10.83 16 24 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 25 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 26 N -0.98 -61.77 13.97 21.65 0.30 -61.47 16 27 Si 0.95 45.22 27.74 68.60 1.90 47.12 16 28 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 30 H -0.26 -11.40 6.52 99.48 0.65 -10.75 16 31 H 0.04 1.49 7.36 -2.39 -0.02 1.47 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 2.37 6.99 -2.39 -0.02 2.36 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.15 2.17 6.18 -2.91 -0.02 2.15 16 37 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.12 2.88 8.02 -2.91 -0.02 2.85 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.06 0.66 8.07 -2.39 -0.02 0.64 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 46 H 0.11 2.15 4.52 -2.39 -0.01 2.14 16 47 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.36 15.93 5.37 -92.71 -0.50 15.43 16 50 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -73.21 389.02 2.29 -70.91 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.39 Total: 29.01 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.18 Total: -5.01 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -3.51 Total: -113.79 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.67 Total: -28.24 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Total: -73.21 2.29 -70.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036100671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.896 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds