Wall clock time and date at job start Wed Apr 1 2020 03:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52462 * 2 1 4 4 C 1.53182 * 109.49936 * 120.08666 * 2 1 3 5 5 N 1.46927 * 108.77887 * 174.58660 * 4 2 1 6 6 C 1.34770 * 120.62989 * 126.36669 * 5 4 2 7 7 O 1.21560 * 119.99872 * 175.82043 * 6 5 4 8 8 C 1.47844 * 120.00506 * 355.82006 * 6 5 4 9 9 C 1.39456 * 120.01310 * 54.78837 * 8 6 5 10 10 C 1.37945 * 119.70000 * 179.69051 * 9 8 6 11 11 C 1.38213 * 120.05348 * 0.59341 * 10 9 8 12 12 C 1.38759 * 120.61332 * 359.78515 * 11 10 9 13 13 C 1.37661 * 119.85936 * 359.83018 * 12 11 10 14 14 C 1.50725 * 121.42393 * 180.35661 * 13 12 11 15 15 C 1.52976 * 109.77235 * 343.01495 * 14 13 12 16 16 O 1.43214 * 108.45014 * 49.14047 * 15 14 13 17 17 C 1.42719 * 113.13241 * 289.38931 * 16 15 14 18 18 C 1.46923 * 118.73739 * 306.38875 * 5 4 2 19 19 C 1.53192 * 108.77363 * 53.60487 * 18 5 4 20 20 C 1.53036 * 109.31608 * 305.36552 * 19 18 5 21 21 H 1.08998 * 109.45963 * 301.34190 * 20 19 18 22 22 N 1.46501 * 109.45985 * 181.38358 * 20 19 18 23 23 C 1.36942 * 120.00042 * 85.00027 * 22 20 19 24 24 H 1.08003 * 119.99748 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00202 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99883 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99840 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47042 * 90.00756 * 27 25 23 29 29 H 1.48504 * 109.46771 * 210.00247 * 27 25 23 30 30 H 1.48498 * 109.47155 * 330.00117 * 27 25 23 31 31 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46967 * 300.07736 * 1 2 3 33 33 H 1.09007 * 109.47091 * 60.07686 * 1 2 3 34 34 H 1.09000 * 109.58408 * 294.37623 * 4 2 1 35 35 H 1.09005 * 109.59068 * 54.79264 * 4 2 1 36 36 H 1.08003 * 120.15068 * 359.93183 * 9 8 6 37 37 H 1.07997 * 119.97434 * 180.33540 * 10 9 8 38 38 H 1.07991 * 119.69055 * 179.80254 * 11 10 9 39 39 H 1.09000 * 109.42571 * 103.10741 * 14 13 12 40 40 H 1.09002 * 109.41925 * 222.98476 * 14 13 12 41 41 H 1.08999 * 109.64042 * 168.82797 * 15 14 13 42 42 H 1.08998 * 109.63655 * 289.24787 * 15 14 13 43 43 H 1.08997 * 109.33438 * 172.01469 * 17 16 15 44 44 H 1.08998 * 109.33381 * 291.68182 * 17 16 15 45 45 H 1.08998 * 109.58517 * 293.82123 * 18 5 4 46 46 H 1.08996 * 109.58807 * 173.39521 * 18 5 4 47 47 H 1.09000 * 109.49744 * 65.32002 * 19 18 5 48 48 H 1.09003 * 109.50003 * 185.41285 * 19 18 5 49 49 H 0.97001 * 120.00495 * 265.00108 * 22 20 19 50 50 H 0.97002 * 119.99937 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2494 5 7 3.5046 -0.8292 1.1694 6 6 4.2811 -0.3857 2.1778 7 8 5.4852 -0.5470 2.1338 8 6 3.6686 0.2969 3.3373 9 6 2.6503 -0.3279 4.0567 10 6 2.0878 0.3122 5.1414 11 6 2.5245 1.5723 5.5045 12 6 3.5318 2.2043 4.7894 13 6 4.1062 1.5722 3.7099 14 6 5.2080 2.2226 2.9132 15 6 5.2416 3.7237 3.2061 16 8 5.2247 3.9088 4.6262 17 6 3.9688 3.5808 5.2194 18 6 4.1053 -1.4267 -0.0309 19 6 3.5708 -0.6950 -1.2661 20 6 2.0408 -0.7231 -1.2484 21 1 1.6967 -1.7572 -1.2355 22 7 1.5265 -0.0528 -2.4453 23 6 1.3951 -0.7494 -3.6170 24 1 1.6702 -1.7930 -3.6586 25 6 0.9073 -0.1145 -4.7509 26 7 0.5716 1.1571 -4.7001 27 14 0.7274 -1.0650 -6.3490 28 1 -0.6248 -1.6754 -6.4123 29 1 0.9075 -0.1409 -7.4974 30 1 1.7565 -2.1339 -6.4077 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3634 0.5127 -0.8907 34 1 1.7637 -0.1581 2.1388 35 1 1.6052 -1.7217 1.2979 36 1 2.3063 -1.3102 3.7681 37 1 1.3026 -0.1698 5.7049 38 1 2.0778 2.0694 6.3528 39 1 6.1647 1.7783 3.1878 40 1 5.0275 2.0657 1.8497 41 1 6.1512 4.1577 2.7909 42 1 4.3702 4.2034 2.7606 43 1 4.0648 3.6062 6.3049 44 1 3.2205 4.3088 4.9062 45 1 3.8375 -2.4818 -0.0869 46 1 5.1895 -1.3246 0.0136 47 1 3.9159 0.3389 -1.2542 48 1 3.9333 -1.1896 -2.1672 49 1 1.2791 0.8843 -2.4079 50 1 0.2311 1.6008 -5.4926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036104391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:25 Heat of formation + Delta-G solvation = -45.089828 kcal Electronic energy + Delta-G solvation = -31224.531377 eV Core-core repulsion = 27216.466745 eV Total energy + Delta-G solvation = -4008.064632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05105 -39.65672 -37.87633 -37.46043 -34.62956 -33.25497 -32.66321 -32.48049 -31.42195 -30.04452 -29.15781 -26.43562 -25.85357 -25.29756 -24.20365 -23.75277 -22.29138 -21.60568 -20.39318 -20.01112 -19.13061 -17.58034 -17.08781 -16.76438 -16.59835 -16.11375 -15.81371 -15.54383 -15.08397 -14.94849 -14.30927 -14.25806 -14.08948 -13.82298 -13.78889 -13.55821 -13.25075 -13.08814 -12.93106 -12.62484 -12.56009 -12.34827 -12.12649 -11.96279 -11.68444 -11.59873 -11.53197 -11.23268 -10.94969 -10.93008 -10.82952 -10.63128 -10.45056 -10.23343 -10.07723 -9.86416 -9.74036 -9.61325 -9.00922 -8.92297 -8.86896 -8.51821 -6.99700 -5.80798 -3.09454 0.76830 1.02162 2.61498 2.99525 3.40262 3.41916 3.46115 3.47367 3.61001 4.30805 4.33141 4.41340 4.54848 4.63336 4.68411 4.94545 4.95321 4.99984 5.03775 5.12164 5.15747 5.23436 5.29321 5.40369 5.41265 5.48407 5.54027 5.55233 5.59201 5.64859 5.67737 5.74076 5.85633 5.90847 5.98486 6.04719 6.09534 6.11095 6.22433 6.26903 6.34157 6.37671 6.46328 6.57560 6.61781 6.78817 6.80734 6.86629 7.01607 7.43799 7.66053 8.14251 8.37485 9.49069 10.05890 10.40785 11.41692 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.002784 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.980871 B =10053.967153 C =10215.603874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.597 5.597 6 C 0.559 3.441 7 O -0.539 6.539 8 C -0.118 4.118 9 C -0.087 4.087 10 C -0.125 4.125 11 C -0.095 4.095 12 C -0.127 4.127 13 C -0.024 4.024 14 C -0.118 4.118 15 C 0.059 3.941 16 O -0.375 6.375 17 C 0.103 3.897 18 C 0.112 3.888 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 1.573 22.206 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.329 5.329 6 C 0.347 3.653 7 O -0.417 6.417 8 C -0.121 4.121 9 C -0.106 4.106 10 C -0.143 4.143 11 C -0.113 4.113 12 C -0.127 4.127 13 C -0.025 4.025 14 C -0.155 4.155 15 C -0.018 4.018 16 O -0.293 6.293 17 C 0.026 3.974 18 C -0.010 4.010 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.875 1.421 22.094 22.476 hybrid contribution -0.592 -0.444 -1.194 1.405 sum 3.283 0.977 20.900 21.178 Atomic orbital electron populations 1.21665 0.94027 1.01826 1.01877 1.21738 0.96584 0.99989 0.94661 0.91273 1.22112 0.78819 1.01124 0.99618 1.48118 1.07204 1.59650 1.17928 1.18301 0.86402 0.78263 0.82332 1.90770 1.14150 1.57595 1.79136 1.19843 0.98653 0.95573 0.98016 1.21271 0.94295 0.99958 0.95034 1.21009 1.00694 0.95337 0.97262 1.21110 0.95935 0.95073 0.99164 1.20190 0.98151 0.98031 0.96359 1.19393 0.95744 0.92766 0.94626 1.21181 0.98191 0.95978 1.00116 1.22689 1.03001 0.94685 0.81401 1.88072 1.32992 1.87296 1.20954 1.21424 0.86286 0.90935 0.98711 1.21753 0.99001 0.96664 0.83593 1.22682 1.00052 1.00455 0.95954 1.20198 0.90478 0.95638 0.86324 0.93405 1.42398 1.76529 1.11354 1.05785 1.19214 1.35892 0.94085 0.87743 0.91240 1.24719 1.02050 0.96005 0.98034 1.69653 1.50014 1.09451 1.28935 0.86226 0.77778 0.78713 0.83686 1.21763 1.21827 1.20786 0.92974 0.93911 0.90650 0.89518 0.91151 0.85177 0.85168 0.85455 0.88509 0.89543 0.87961 0.92360 0.87646 0.91517 0.91632 0.89596 0.92311 0.90514 0.78253 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.03 37.16 0.34 -1.69 16 2 C -0.11 -1.68 2.46 -90.50 -0.22 -1.90 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.11 1.34 4.83 -3.72 -0.02 1.33 16 5 N -0.60 -8.47 2.97 -173.89 -0.52 -8.98 16 6 C 0.56 8.39 6.16 -12.33 -0.08 8.31 16 7 O -0.54 -9.61 15.56 5.31 0.08 -9.52 16 8 C -0.12 -1.51 4.87 -104.90 -0.51 -2.02 16 9 C -0.09 -0.90 7.44 -39.24 -0.29 -1.19 16 10 C -0.13 -1.06 10.03 -39.70 -0.40 -1.46 16 11 C -0.09 -0.80 9.66 -39.40 -0.38 -1.18 16 12 C -0.13 -1.30 5.80 -104.65 -0.61 -1.91 16 13 C -0.02 -0.30 5.81 -104.21 -0.61 -0.91 16 14 C -0.12 -1.44 4.79 -27.88 -0.13 -1.57 16 15 C 0.06 0.60 6.85 37.15 0.25 0.85 16 16 O -0.37 -4.12 10.80 -35.23 -0.38 -4.50 16 17 C 0.10 0.90 6.66 36.00 0.24 1.14 16 18 C 0.11 1.67 6.42 -3.71 -0.02 1.65 16 19 C -0.15 -2.61 5.66 -26.61 -0.15 -2.76 16 20 C 0.18 3.40 2.19 -67.89 -0.15 3.25 16 21 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 22 N -0.72 -16.97 4.41 -53.38 -0.24 -17.21 16 23 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 24 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 27 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 30 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.36 7.36 -51.92 -0.38 0.98 16 34 H 0.09 0.98 4.76 -51.93 -0.25 0.74 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.13 1.17 7.41 -52.48 -0.39 0.78 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 40 H 0.09 1.14 7.49 -51.93 -0.39 0.75 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 43 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 1.33 7.03 -51.93 -0.36 0.97 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.38 9.74 7.51 -40.82 -0.31 9.43 16 50 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -31.71 391.17 -10.39 -42.10 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.95 Total: 8.94 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.98 Total: -6.97 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.03 Total: -52.83 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.30 Total: -14.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.71 -10.39 -42.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036104391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.991 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds