Wall clock time and date at job start Wed Apr 1 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.52462 * 2 1 4 4 C 1.53182 * 109.49936 * 120.08666 * 2 1 3 5 5 N 1.46927 * 108.77887 * 174.58660 * 4 2 1 6 6 C 1.34770 * 120.62989 * 126.36669 * 5 4 2 7 7 O 1.21560 * 119.99872 * 175.82043 * 6 5 4 8 8 C 1.47844 * 120.00506 * 355.82006 * 6 5 4 9 9 C 1.39456 * 120.01310 * 54.78837 * 8 6 5 10 10 C 1.37945 * 119.70000 * 179.69051 * 9 8 6 11 11 C 1.38213 * 120.05348 * 0.59341 * 10 9 8 12 12 C 1.38759 * 120.61332 * 359.78515 * 11 10 9 13 13 C 1.37661 * 119.85936 * 359.83018 * 12 11 10 14 14 C 1.50725 * 121.42393 * 180.35661 * 13 12 11 15 15 C 1.52976 * 109.77235 * 343.01495 * 14 13 12 16 16 O 1.43214 * 108.45014 * 49.14047 * 15 14 13 17 17 C 1.42719 * 113.13241 * 289.38931 * 16 15 14 18 18 C 1.46923 * 118.73739 * 306.38875 * 5 4 2 19 19 C 1.53192 * 108.77363 * 53.60487 * 18 5 4 20 20 C 1.53036 * 109.31608 * 305.36552 * 19 18 5 21 21 H 1.08998 * 109.45963 * 301.34190 * 20 19 18 22 22 N 1.46501 * 109.45985 * 181.38358 * 20 19 18 23 23 C 1.36942 * 120.00042 * 85.00027 * 22 20 19 24 24 H 1.08003 * 119.99748 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00202 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99883 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99840 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47042 * 90.00756 * 27 25 23 29 29 H 1.48504 * 109.46771 * 210.00247 * 27 25 23 30 30 H 1.48498 * 109.47155 * 330.00117 * 27 25 23 31 31 H 1.08998 * 109.47223 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46967 * 300.07736 * 1 2 3 33 33 H 1.09007 * 109.47091 * 60.07686 * 1 2 3 34 34 H 1.09000 * 109.58408 * 294.37623 * 4 2 1 35 35 H 1.09005 * 109.59068 * 54.79264 * 4 2 1 36 36 H 1.08003 * 120.15068 * 359.93183 * 9 8 6 37 37 H 1.07997 * 119.97434 * 180.33540 * 10 9 8 38 38 H 1.07991 * 119.69055 * 179.80254 * 11 10 9 39 39 H 1.09000 * 109.42571 * 103.10741 * 14 13 12 40 40 H 1.09002 * 109.41925 * 222.98476 * 14 13 12 41 41 H 1.08999 * 109.64042 * 168.82797 * 15 14 13 42 42 H 1.08998 * 109.63655 * 289.24787 * 15 14 13 43 43 H 1.08997 * 109.33438 * 172.01469 * 17 16 15 44 44 H 1.08998 * 109.33381 * 291.68182 * 17 16 15 45 45 H 1.08998 * 109.58517 * 293.82123 * 18 5 4 46 46 H 1.08996 * 109.58807 * 173.39521 * 18 5 4 47 47 H 1.09000 * 109.49744 * 65.32002 * 19 18 5 48 48 H 1.09003 * 109.50003 * 185.41285 * 19 18 5 49 49 H 0.97001 * 120.00495 * 265.00108 * 22 20 19 50 50 H 0.97002 * 119.99937 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2494 5 7 3.5046 -0.8292 1.1694 6 6 4.2811 -0.3857 2.1778 7 8 5.4852 -0.5470 2.1338 8 6 3.6686 0.2969 3.3373 9 6 2.6503 -0.3279 4.0567 10 6 2.0878 0.3122 5.1414 11 6 2.5245 1.5723 5.5045 12 6 3.5318 2.2043 4.7894 13 6 4.1062 1.5722 3.7099 14 6 5.2080 2.2226 2.9132 15 6 5.2416 3.7237 3.2061 16 8 5.2247 3.9088 4.6262 17 6 3.9688 3.5808 5.2194 18 6 4.1053 -1.4267 -0.0309 19 6 3.5708 -0.6950 -1.2661 20 6 2.0408 -0.7231 -1.2484 21 1 1.6967 -1.7572 -1.2355 22 7 1.5265 -0.0528 -2.4453 23 6 1.3951 -0.7494 -3.6170 24 1 1.6702 -1.7930 -3.6586 25 6 0.9073 -0.1145 -4.7509 26 7 0.5716 1.1571 -4.7001 27 14 0.7274 -1.0650 -6.3490 28 1 -0.6248 -1.6754 -6.4123 29 1 0.9075 -0.1409 -7.4974 30 1 1.7565 -2.1339 -6.4077 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3634 0.5127 -0.8907 34 1 1.7637 -0.1581 2.1388 35 1 1.6052 -1.7217 1.2979 36 1 2.3063 -1.3102 3.7681 37 1 1.3026 -0.1698 5.7049 38 1 2.0778 2.0694 6.3528 39 1 6.1647 1.7783 3.1878 40 1 5.0275 2.0657 1.8497 41 1 6.1512 4.1577 2.7909 42 1 4.3702 4.2034 2.7606 43 1 4.0648 3.6062 6.3049 44 1 3.2205 4.3088 4.9062 45 1 3.8375 -2.4818 -0.0869 46 1 5.1895 -1.3246 0.0136 47 1 3.9159 0.3389 -1.2542 48 1 3.9333 -1.1896 -2.1672 49 1 1.2791 0.8843 -2.4079 50 1 0.2311 1.6008 -5.4926 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036104391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:24 Heat of formation + Delta-G solvation = -63.997459 kcal Electronic energy + Delta-G solvation = -31225.351274 eV Core-core repulsion = 27216.466745 eV Total energy + Delta-G solvation = -4008.884529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00398 -40.66934 -39.08981 -38.37148 -36.21893 -34.26461 -34.09834 -33.55914 -32.62083 -31.33837 -30.39260 -27.62649 -26.84738 -26.55449 -25.35066 -24.82042 -23.67481 -22.85600 -21.36677 -21.11817 -20.34112 -19.12081 -18.44483 -17.70997 -17.49875 -17.02554 -16.78295 -16.72526 -16.24243 -16.14978 -15.69702 -15.50685 -15.23711 -15.15011 -14.99259 -14.59983 -14.42396 -14.26185 -14.03463 -13.85038 -13.69271 -13.30968 -13.16496 -13.04037 -12.90766 -12.86755 -12.77500 -12.57940 -12.54564 -12.25131 -12.16074 -12.05602 -11.84851 -11.72692 -11.65840 -11.27562 -10.99560 -10.88755 -10.66651 -9.85234 -9.68304 -9.62574 -8.98124 -7.92611 -5.20031 -0.02662 0.27247 1.47576 1.48200 1.51313 1.56280 1.92328 2.56456 2.63551 2.86863 3.33844 3.40880 3.60602 3.64618 3.74407 3.77405 3.82795 4.00578 4.05241 4.08431 4.14571 4.26878 4.30916 4.33470 4.38932 4.44072 4.44844 4.54672 4.64036 4.66296 4.70185 4.75075 4.77647 4.78723 4.80448 4.88442 4.95889 5.03512 5.05434 5.13037 5.27817 5.31886 5.39878 5.43597 5.46483 5.47741 5.54389 5.59102 5.89109 6.06977 6.28644 6.30398 6.99468 7.35908 8.11555 8.34837 9.30774 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.002784 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.980871 B =10053.967153 C =10215.603874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.052 0.948 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.559 3.441 7 O -0.577 6.577 8 C -0.142 4.142 9 C -0.091 4.091 10 C -0.117 4.117 11 C -0.086 4.086 12 C -0.134 4.134 13 C -0.052 4.052 14 C -0.114 4.114 15 C 0.063 3.937 16 O -0.391 6.391 17 C 0.097 3.903 18 C 0.121 3.879 19 C -0.139 4.139 20 C 0.180 3.820 21 H 0.051 0.949 22 N -0.730 5.730 23 C -0.232 4.232 24 H 0.075 0.925 25 C -0.074 4.074 26 N -0.969 5.969 27 Si 0.966 3.034 28 H -0.287 1.287 29 H -0.300 1.300 30 H -0.271 1.271 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.037 0.963 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.371 0.629 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 0.686 25.219 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.071 0.929 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.348 3.652 7 O -0.458 6.458 8 C -0.145 4.145 9 C -0.110 4.110 10 C -0.135 4.135 11 C -0.104 4.104 12 C -0.134 4.134 13 C -0.053 4.053 14 C -0.151 4.151 15 C -0.013 4.013 16 O -0.310 6.310 17 C 0.021 3.979 18 C -0.002 4.002 19 C -0.180 4.180 20 C 0.072 3.928 21 H 0.069 0.931 22 N -0.369 5.369 23 C -0.364 4.364 24 H 0.093 0.907 25 C -0.266 4.266 26 N -0.620 5.620 27 Si 0.796 3.204 28 H -0.214 1.214 29 H -0.227 1.227 30 H -0.196 1.196 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.203 0.797 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.264 0.497 25.143 25.249 hybrid contribution -0.074 -0.168 -2.015 2.024 sum 2.190 0.329 23.128 23.233 Atomic orbital electron populations 1.21571 0.93257 1.02274 1.01507 1.21614 0.97093 0.98985 0.94365 0.92943 1.22181 0.77631 1.02336 0.98654 1.48158 1.07923 1.59356 1.17388 1.18753 0.85951 0.77524 0.82953 1.90739 1.15912 1.58981 1.80148 1.19773 1.00475 0.96159 0.98113 1.21507 0.93531 1.00545 0.95381 1.21440 1.00610 0.95144 0.96274 1.21562 0.94562 0.94978 0.99297 1.20462 0.98491 0.98713 0.95742 1.19527 0.96487 0.93278 0.95975 1.21059 0.97575 0.97510 0.98952 1.22674 1.03851 0.93238 0.81575 1.88045 1.34600 1.87323 1.20988 1.21718 0.85771 0.90497 0.99923 1.21580 0.98479 0.97296 0.82844 1.22473 0.99274 0.99432 0.96801 1.20423 0.90732 0.95658 0.86029 0.93131 1.42568 1.76733 1.10864 1.06725 1.19579 1.33827 0.94347 0.88665 0.90679 1.25457 1.03127 0.96896 1.01159 1.69807 1.51946 1.10984 1.29273 0.85242 0.77876 0.77484 0.79792 1.21433 1.22696 1.19636 0.92062 0.90856 0.94391 0.87416 0.88791 0.83751 0.81700 0.81860 0.90739 0.91701 0.87082 0.91598 0.85257 0.89871 0.89655 0.90501 0.94327 0.92050 0.79687 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.03 71.98 0.65 -2.99 16 2 C -0.10 -3.00 2.46 -10.72 -0.03 -3.03 16 3 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.11 2.63 4.83 86.36 0.42 3.05 16 5 N -0.60 -16.55 2.97 -822.34 -2.44 -19.00 16 6 C 0.56 16.84 6.16 86.79 0.53 17.38 16 7 O -0.58 -21.43 15.56 -3.90 -0.06 -21.49 16 8 C -0.14 -3.51 4.87 -20.05 -0.10 -3.61 16 9 C -0.09 -1.60 7.44 22.49 0.17 -1.43 16 10 C -0.12 -1.45 10.03 22.19 0.22 -1.22 16 11 C -0.09 -1.08 9.66 22.39 0.22 -0.86 16 12 C -0.13 -2.42 5.80 -19.88 -0.12 -2.54 16 13 C -0.05 -1.26 5.81 -19.60 -0.11 -1.37 16 14 C -0.11 -2.93 4.79 29.85 0.14 -2.79 16 15 C 0.06 1.30 6.85 71.97 0.49 1.79 16 16 O -0.39 -8.20 10.80 -148.98 -1.61 -9.81 16 17 C 0.10 1.44 6.66 71.23 0.47 1.91 16 18 C 0.12 3.60 6.42 86.36 0.55 4.16 16 19 C -0.14 -4.95 5.66 30.67 0.17 -4.77 16 20 C 0.18 6.67 2.19 45.02 0.10 6.77 16 21 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 22 N -0.73 -35.20 4.41 -322.81 -1.42 -36.63 16 23 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 24 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 25 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 26 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 27 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 28 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 30 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.37 7.36 -2.38 -0.02 1.35 16 34 H 0.11 2.11 4.76 -2.39 -0.01 2.10 16 35 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.14 2.04 7.41 -2.91 -0.02 2.02 16 37 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 38 H 0.16 0.86 8.06 -2.92 -0.02 0.83 16 39 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 40 H 0.06 1.87 7.49 -2.39 -0.02 1.86 16 41 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 43 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.08 2.46 7.03 -2.39 -0.02 2.44 16 47 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.37 19.59 7.51 -92.71 -0.70 18.90 16 50 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -72.01 391.17 2.11 -69.90 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.25 Total: 32.46 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.09 Total: -4.88 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -3.58 Total: -113.82 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.67 Total: -31.30 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.01 2.11 -69.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036104391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.898 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds