Wall clock time and date at job start Wed Apr 1 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49546 * 2 1 4 4 C 1.53187 * 109.49799 * 120.10119 * 2 1 3 5 5 N 1.46931 * 108.77309 * 174.58667 * 4 2 1 6 6 C 1.34772 * 120.62926 * 126.41675 * 5 4 2 7 7 O 1.21280 * 120.00243 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47273 * 179.97438 * 8 6 5 10 10 C 1.38285 * 120.12342 * 89.99606 * 9 8 6 11 11 C 1.37931 * 120.35417 * 180.16413 * 10 9 8 12 12 C 1.39280 * 120.23707 * 359.97438 * 11 10 9 13 13 C 1.38884 * 118.88005 * 359.65437 * 12 11 10 14 14 C 1.37738 * 120.78264 * 0.29844 * 13 12 11 15 15 C 1.51642 * 107.04345 * 180.95696 * 13 12 11 16 16 C 1.54702 * 101.94518 * 15.14490 * 15 13 12 17 17 O 1.36140 * 129.89618 * 179.08104 * 12 11 10 18 18 C 1.46923 * 118.73730 * 306.38501 * 5 4 2 19 19 C 1.53195 * 108.77575 * 53.61542 * 18 5 4 20 20 C 1.53043 * 109.49393 * 239.93668 * 2 1 3 21 21 H 1.08998 * 109.46060 * 58.66545 * 20 2 1 22 22 N 1.46496 * 109.44915 * 298.69525 * 20 2 1 23 23 C 1.36949 * 119.99616 * 154.94210 * 22 20 2 24 24 H 1.07999 * 119.99880 * 359.97438 * 23 22 20 25 25 C 1.38805 * 119.99695 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99958 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00298 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.47285 * 89.99991 * 27 25 23 29 29 H 1.48502 * 109.47443 * 209.99833 * 27 25 23 30 30 H 1.48503 * 109.47224 * 330.00176 * 27 25 23 31 31 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46678 * 300.05876 * 1 2 3 33 33 H 1.08991 * 109.47219 * 60.06166 * 1 2 3 34 34 H 1.09001 * 109.58881 * 294.37192 * 4 2 1 35 35 H 1.08996 * 109.58907 * 54.66000 * 4 2 1 36 36 H 1.09002 * 109.47044 * 299.99355 * 8 6 5 37 37 H 1.09001 * 109.47565 * 59.99202 * 8 6 5 38 38 H 1.08005 * 119.81960 * 0.18419 * 10 9 8 39 39 H 1.08001 * 119.87776 * 179.97438 * 11 10 9 40 40 H 1.08010 * 120.00926 * 179.87804 * 14 13 12 41 41 H 1.09005 * 110.93626 * 133.30391 * 15 13 12 42 42 H 1.08996 * 110.94050 * 256.94411 * 15 13 12 43 43 H 1.09001 * 110.75340 * 93.09438 * 16 15 13 44 44 H 1.09007 * 110.75437 * 216.26516 * 16 15 13 45 45 H 1.08996 * 109.59375 * 293.82604 * 18 5 4 46 46 H 1.09006 * 109.58686 * 173.39604 * 18 5 4 47 47 H 1.08990 * 109.49959 * 185.41234 * 19 18 5 48 48 H 1.08999 * 109.49609 * 65.30943 * 19 18 5 49 49 H 0.96998 * 120.00391 * 334.93653 * 22 20 2 50 50 H 0.96996 * 120.00018 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5047 -0.8295 1.1692 6 6 4.2812 -0.3872 2.1780 7 8 3.7732 0.1038 3.1638 8 6 5.7806 -0.5016 2.0807 9 6 6.4096 0.0615 3.3290 10 6 6.6499 -0.7590 4.4159 11 6 7.2222 -0.2478 5.5620 12 6 7.5637 1.1005 5.6343 13 6 7.3246 1.9129 4.5335 14 6 6.7539 1.4001 3.3896 15 6 7.8137 3.3028 4.8923 16 6 8.6822 3.0240 6.1418 17 8 8.1149 1.8080 6.6585 18 6 4.1053 -1.4267 -0.0313 19 6 3.5709 -0.6946 -1.2664 20 6 2.0408 -0.7227 -1.2486 21 1 1.6581 -0.2238 -2.1390 22 7 1.5783 -2.1127 -1.2311 23 6 1.4468 -2.8053 -2.4052 24 1 1.6836 -2.3267 -3.3439 25 6 1.0091 -4.1224 -2.3886 26 7 0.8822 -4.7880 -3.5170 27 14 0.6002 -4.9505 -0.7649 28 1 -0.8332 -4.7310 -0.4444 29 1 0.8660 -6.4076 -0.8714 30 1 1.4425 -4.3711 0.3122 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5148 0.8895 33 1 -0.3633 0.5128 -0.8905 34 1 1.7638 -0.1587 2.1388 35 1 1.6034 -1.7211 1.2987 36 1 6.0589 -1.5502 1.9746 37 1 6.1322 0.0571 1.2133 38 1 6.3884 -1.8057 4.3668 39 1 7.4062 -0.8955 6.4065 40 1 6.5717 2.0437 2.5415 41 1 8.4147 3.7242 4.0864 42 1 6.9783 3.9588 5.1365 43 1 9.7251 2.8751 5.8619 44 1 8.5899 3.8343 6.8650 45 1 3.8376 -2.4818 -0.0877 46 1 5.1896 -1.3246 0.0131 47 1 3.9333 -1.1890 -2.1675 48 1 3.9159 0.3392 -1.2541 49 1 1.3653 -2.5424 -0.3880 50 1 0.5767 -5.7085 -3.5054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036125251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:18 Heat of formation + Delta-G solvation = -27.414629 kcal Electronic energy + Delta-G solvation = -30388.206259 eV Core-core repulsion = 26380.908081 eV Total energy + Delta-G solvation = -4007.298178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31560 -40.19337 -38.31553 -37.31056 -34.41330 -33.11157 -32.91838 -32.12400 -31.50884 -29.77755 -29.49230 -27.99097 -26.07452 -24.92193 -23.66057 -23.18033 -22.20354 -21.72947 -21.47078 -19.57072 -18.23391 -17.89651 -17.62236 -17.02161 -16.88681 -16.42817 -15.93618 -15.35481 -14.96190 -14.67568 -14.45425 -14.31462 -13.86382 -13.83561 -13.62569 -13.50024 -13.43329 -13.18917 -13.05884 -12.65104 -12.60374 -12.35494 -12.16185 -12.05546 -11.88073 -11.66271 -11.55615 -11.39470 -11.07419 -11.02246 -10.96063 -10.92912 -10.62929 -10.56337 -10.24509 -9.87812 -9.65408 -9.58597 -9.04160 -8.99077 -8.35702 -8.21270 -7.31824 -5.82297 -3.17661 1.10942 1.19205 2.75013 3.01302 3.12391 3.31166 3.34638 3.41346 3.57205 4.12261 4.26541 4.53224 4.58644 4.60162 4.69840 4.71491 4.90844 5.02446 5.07342 5.11922 5.17496 5.21578 5.22984 5.33429 5.34970 5.38983 5.44370 5.47893 5.50918 5.57744 5.62298 5.74783 5.86048 5.88040 5.91771 6.04980 6.06723 6.18794 6.19710 6.27356 6.35692 6.37946 6.42838 6.46488 6.54282 6.63932 6.72706 6.86954 6.98136 7.60394 7.94151 8.31458 8.36896 9.15096 9.87753 10.07580 11.36071 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.002380 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.447395 B =11761.225825 C =12140.232416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.118 3.882 5 N -0.605 5.605 6 C 0.514 3.486 7 O -0.543 6.543 8 C -0.097 4.097 9 C -0.086 4.086 10 C -0.070 4.070 11 C -0.135 4.135 12 C 0.100 3.900 13 C -0.174 4.174 14 C -0.055 4.055 15 C -0.110 4.110 16 C 0.052 3.948 17 O -0.307 6.307 18 C 0.111 3.889 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.060 0.940 22 N -0.744 5.744 23 C -0.241 4.241 24 H 0.091 0.909 25 C 0.006 3.994 26 N -0.933 5.933 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.052 0.948 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.158 14.729 14.822 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.089 0.911 4 C -0.004 4.004 5 N -0.338 5.338 6 C 0.302 3.698 7 O -0.421 6.421 8 C -0.137 4.137 9 C -0.087 4.087 10 C -0.088 4.088 11 C -0.154 4.154 12 C 0.055 3.945 13 C -0.175 4.175 14 C -0.073 4.073 15 C -0.147 4.147 16 C -0.023 4.023 17 O -0.221 6.221 18 C -0.012 4.012 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.078 0.922 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.581 5.581 27 Si 0.709 3.291 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.071 0.929 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.889 14.857 15.330 26.027 hybrid contribution -0.327 -0.718 0.814 1.134 sum 14.562 14.138 16.144 25.934 Atomic orbital electron populations 1.21677 0.94250 1.02768 1.00930 1.21749 0.96488 0.99254 0.95624 0.91108 1.21610 0.78987 1.00928 0.98897 1.48165 1.06963 1.60314 1.18366 1.20466 0.88894 0.77881 0.82604 1.90690 1.75420 1.44925 1.31066 1.20632 0.92353 1.03617 0.97091 1.19159 1.00518 0.93575 0.95459 1.20716 0.96529 0.99900 0.91641 1.20179 1.04398 0.91381 0.99426 1.19534 0.95472 0.92455 0.87065 1.20655 1.05795 0.95198 0.95867 1.20088 0.96413 0.94290 0.96477 1.21777 1.00044 0.94762 0.98091 1.23808 0.97219 0.85695 0.95606 1.86824 1.71539 1.33057 1.30728 1.21774 0.96758 0.98739 0.83896 1.22500 1.00021 0.98954 0.97603 1.20185 0.90972 0.86173 0.95227 0.92202 1.42846 1.80685 1.09383 1.05816 1.19051 1.37558 0.94167 0.86267 0.89167 1.24638 1.01553 0.96731 0.96011 1.69688 1.53081 1.10875 1.24416 0.86665 0.78505 0.79282 0.84659 1.21075 1.21770 1.20481 0.91721 0.93535 0.92311 0.89574 0.91651 0.87862 0.87936 0.85215 0.85471 0.85947 0.89115 0.89177 0.90632 0.87715 0.90167 0.90765 0.90196 0.92931 0.80582 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.05 37.16 0.34 -1.71 16 2 C -0.11 -1.68 2.67 -90.50 -0.24 -1.92 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.85 5.42 -3.71 -0.02 1.83 16 5 N -0.61 -8.89 2.97 -172.77 -0.51 -9.40 16 6 C 0.51 7.46 7.69 -10.99 -0.08 7.38 16 7 O -0.54 -9.74 15.45 5.56 0.09 -9.66 16 8 C -0.10 -1.05 4.19 -29.04 -0.12 -1.17 16 9 C -0.09 -1.01 4.38 -104.56 -0.46 -1.47 16 10 C -0.07 -0.80 9.68 -39.68 -0.38 -1.18 16 11 C -0.14 -1.55 10.06 -39.31 -0.40 -1.95 16 12 C 0.10 1.19 7.03 -38.96 -0.27 0.92 16 13 C -0.17 -1.93 6.27 -104.10 -0.65 -2.58 16 14 C -0.05 -0.62 9.69 -39.72 -0.39 -1.00 16 15 C -0.11 -0.85 7.12 -26.52 -0.19 -1.04 16 16 C 0.05 0.37 8.01 38.05 0.30 0.68 16 17 O -0.31 -3.47 11.11 -20.19 -0.22 -3.69 16 18 C 0.11 1.55 6.08 -3.71 -0.02 1.53 16 19 C -0.15 -2.24 5.78 -26.61 -0.15 -2.39 16 20 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 21 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 22 N -0.74 -15.81 3.44 -53.38 -0.18 -15.99 16 23 C -0.24 -6.26 10.41 -15.06 -0.16 -6.42 16 24 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 26 N -0.93 -28.21 13.97 55.49 0.78 -27.44 16 27 Si 0.88 21.32 27.73 -169.99 -4.71 16.61 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 31 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.38 7.01 -51.93 -0.36 1.01 16 35 H 0.07 1.11 6.64 -51.93 -0.34 0.77 16 36 H 0.10 0.94 7.89 -51.93 -0.41 0.53 16 37 H 0.10 0.90 7.64 -51.93 -0.40 0.50 16 38 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 46 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 47 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.36 7.74 3.79 -40.82 -0.15 7.59 16 50 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -32.89 393.04 -9.87 -42.76 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.85 Total: 8.28 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.17 Total: -7.39 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.08 Total: -52.83 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.14 Total: -13.35 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.89 -9.87 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036125251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.347 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds