Wall clock time and date at job start Wed Apr 1 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49546 * 2 1 4 4 C 1.53187 * 109.49799 * 120.10119 * 2 1 3 5 5 N 1.46931 * 108.77309 * 174.58667 * 4 2 1 6 6 C 1.34772 * 120.62926 * 126.41675 * 5 4 2 7 7 O 1.21280 * 120.00243 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47273 * 179.97438 * 8 6 5 10 10 C 1.38285 * 120.12342 * 89.99606 * 9 8 6 11 11 C 1.37931 * 120.35417 * 180.16413 * 10 9 8 12 12 C 1.39280 * 120.23707 * 359.97438 * 11 10 9 13 13 C 1.38884 * 118.88005 * 359.65437 * 12 11 10 14 14 C 1.37738 * 120.78264 * 0.29844 * 13 12 11 15 15 C 1.51642 * 107.04345 * 180.95696 * 13 12 11 16 16 C 1.54702 * 101.94518 * 15.14490 * 15 13 12 17 17 O 1.36140 * 129.89618 * 179.08104 * 12 11 10 18 18 C 1.46923 * 118.73730 * 306.38501 * 5 4 2 19 19 C 1.53195 * 108.77575 * 53.61542 * 18 5 4 20 20 C 1.53043 * 109.49393 * 239.93668 * 2 1 3 21 21 H 1.08998 * 109.46060 * 58.66545 * 20 2 1 22 22 N 1.46496 * 109.44915 * 298.69525 * 20 2 1 23 23 C 1.36949 * 119.99616 * 154.94210 * 22 20 2 24 24 H 1.07999 * 119.99880 * 359.97438 * 23 22 20 25 25 C 1.38805 * 119.99695 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99958 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00298 * 359.97438 * 25 23 22 28 28 H 1.48506 * 109.47285 * 89.99991 * 27 25 23 29 29 H 1.48502 * 109.47443 * 209.99833 * 27 25 23 30 30 H 1.48503 * 109.47224 * 330.00176 * 27 25 23 31 31 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46678 * 300.05876 * 1 2 3 33 33 H 1.08991 * 109.47219 * 60.06166 * 1 2 3 34 34 H 1.09001 * 109.58881 * 294.37192 * 4 2 1 35 35 H 1.08996 * 109.58907 * 54.66000 * 4 2 1 36 36 H 1.09002 * 109.47044 * 299.99355 * 8 6 5 37 37 H 1.09001 * 109.47565 * 59.99202 * 8 6 5 38 38 H 1.08005 * 119.81960 * 0.18419 * 10 9 8 39 39 H 1.08001 * 119.87776 * 179.97438 * 11 10 9 40 40 H 1.08010 * 120.00926 * 179.87804 * 14 13 12 41 41 H 1.09005 * 110.93626 * 133.30391 * 15 13 12 42 42 H 1.08996 * 110.94050 * 256.94411 * 15 13 12 43 43 H 1.09001 * 110.75340 * 93.09438 * 16 15 13 44 44 H 1.09007 * 110.75437 * 216.26516 * 16 15 13 45 45 H 1.08996 * 109.59375 * 293.82604 * 18 5 4 46 46 H 1.09006 * 109.58686 * 173.39604 * 18 5 4 47 47 H 1.08990 * 109.49959 * 185.41234 * 19 18 5 48 48 H 1.08999 * 109.49609 * 65.30943 * 19 18 5 49 49 H 0.96998 * 120.00391 * 334.93653 * 22 20 2 50 50 H 0.96996 * 120.00018 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5047 -0.8295 1.1692 6 6 4.2812 -0.3872 2.1780 7 8 3.7732 0.1038 3.1638 8 6 5.7806 -0.5016 2.0807 9 6 6.4096 0.0615 3.3290 10 6 6.6499 -0.7590 4.4159 11 6 7.2222 -0.2478 5.5620 12 6 7.5637 1.1005 5.6343 13 6 7.3246 1.9129 4.5335 14 6 6.7539 1.4001 3.3896 15 6 7.8137 3.3028 4.8923 16 6 8.6822 3.0240 6.1418 17 8 8.1149 1.8080 6.6585 18 6 4.1053 -1.4267 -0.0313 19 6 3.5709 -0.6946 -1.2664 20 6 2.0408 -0.7227 -1.2486 21 1 1.6581 -0.2238 -2.1390 22 7 1.5783 -2.1127 -1.2311 23 6 1.4468 -2.8053 -2.4052 24 1 1.6836 -2.3267 -3.3439 25 6 1.0091 -4.1224 -2.3886 26 7 0.8822 -4.7880 -3.5170 27 14 0.6002 -4.9505 -0.7649 28 1 -0.8332 -4.7310 -0.4444 29 1 0.8660 -6.4076 -0.8714 30 1 1.4425 -4.3711 0.3122 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5148 0.8895 33 1 -0.3633 0.5128 -0.8905 34 1 1.7638 -0.1587 2.1388 35 1 1.6034 -1.7211 1.2987 36 1 6.0589 -1.5502 1.9746 37 1 6.1322 0.0571 1.2133 38 1 6.3884 -1.8057 4.3668 39 1 7.4062 -0.8955 6.4065 40 1 6.5717 2.0437 2.5415 41 1 8.4147 3.7242 4.0864 42 1 6.9783 3.9588 5.1365 43 1 9.7251 2.8751 5.8619 44 1 8.5899 3.8343 6.8650 45 1 3.8376 -2.4818 -0.0877 46 1 5.1896 -1.3246 0.0131 47 1 3.9333 -1.1890 -2.1675 48 1 3.9159 0.3392 -1.2541 49 1 1.3653 -2.5424 -0.3880 50 1 0.5767 -5.7085 -3.5054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036125251.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:17 Heat of formation + Delta-G solvation = -46.402732 kcal Electronic energy + Delta-G solvation = -30389.029645 eV Core-core repulsion = 26380.908081 eV Total energy + Delta-G solvation = -4008.121564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06693 -41.34138 -39.43922 -38.30135 -35.91018 -34.58310 -33.65516 -33.27594 -32.86575 -31.42298 -30.18373 -28.92917 -27.30114 -26.20249 -24.94883 -24.33146 -23.02215 -22.94422 -22.33561 -20.75369 -19.85157 -19.46917 -18.36887 -18.10574 -17.69658 -17.18091 -16.93102 -16.65030 -16.39861 -15.99017 -15.68436 -15.41470 -15.08534 -15.05152 -14.77688 -14.60725 -14.46133 -14.15953 -14.11118 -13.88181 -13.66152 -13.36222 -13.31286 -13.13103 -12.97178 -12.79853 -12.74695 -12.64482 -12.52067 -12.36982 -12.04012 -11.95362 -11.91019 -11.75757 -11.67767 -11.64935 -11.18309 -10.95975 -10.75319 -9.83588 -9.60585 -9.21679 -9.01424 -7.97272 -5.27705 0.29217 0.37534 1.36738 1.38666 1.45405 1.65768 2.03303 2.34306 2.49772 2.72245 3.35099 3.46465 3.62323 3.63782 3.64103 3.79514 3.93169 3.97895 4.01146 4.05132 4.16046 4.20844 4.30011 4.36407 4.39643 4.41552 4.52213 4.62496 4.64288 4.65255 4.67205 4.71120 4.81937 4.87121 4.88813 4.97641 5.02342 5.12949 5.13748 5.19146 5.26111 5.29187 5.32415 5.39817 5.44186 5.58446 5.64737 5.65978 5.85909 6.21769 6.27048 6.48734 7.13894 7.20003 7.91194 8.09015 9.24598 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.002380 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.447395 B =11761.225825 C =12140.232416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.090 0.910 4 C 0.120 3.880 5 N -0.605 5.605 6 C 0.514 3.486 7 O -0.580 6.580 8 C -0.091 4.091 9 C -0.099 4.099 10 C -0.081 4.081 11 C -0.151 4.151 12 C 0.080 3.920 13 C -0.185 4.185 14 C -0.065 4.065 15 C -0.107 4.107 16 C 0.046 3.954 17 O -0.329 6.329 18 C 0.114 3.886 19 C -0.143 4.143 20 C 0.175 3.825 21 H 0.049 0.951 22 N -0.742 5.742 23 C -0.209 4.209 24 H 0.063 0.937 25 C -0.060 4.060 26 N -0.984 5.984 27 Si 0.939 3.061 28 H -0.285 1.285 29 H -0.301 1.301 30 H -0.256 1.256 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.128 0.872 45 H 0.055 0.945 46 H 0.114 0.886 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.361 0.639 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.830 16.693 16.141 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.304 3.696 7 O -0.460 6.460 8 C -0.130 4.130 9 C -0.099 4.099 10 C -0.099 4.099 11 C -0.170 4.170 12 C 0.035 3.965 13 C -0.186 4.186 14 C -0.083 4.083 15 C -0.144 4.144 16 C -0.028 4.028 17 O -0.244 6.244 18 C -0.008 4.008 19 C -0.183 4.183 20 C 0.067 3.933 21 H 0.067 0.933 22 N -0.386 5.386 23 C -0.341 4.341 24 H 0.081 0.919 25 C -0.252 4.252 26 N -0.636 5.636 27 Si 0.768 3.232 28 H -0.212 1.212 29 H -0.228 1.228 30 H -0.181 1.181 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.146 0.854 45 H 0.073 0.927 46 H 0.132 0.868 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.196 0.804 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.593 16.878 16.677 28.954 hybrid contribution -0.818 -1.177 0.409 1.491 sum 15.775 15.702 17.085 28.059 Atomic orbital electron populations 1.21663 0.94157 1.01601 1.02076 1.21651 0.96544 0.99704 0.94009 0.89173 1.21496 0.80016 0.99951 0.98890 1.48209 1.06494 1.60293 1.18736 1.21092 0.90300 0.76626 0.81580 1.90679 1.76406 1.46553 1.32400 1.20687 0.89174 1.05339 0.97791 1.19347 1.00764 0.93949 0.95865 1.20940 0.96624 1.00642 0.91720 1.20422 1.04701 0.91839 0.99997 1.19817 0.96021 0.92939 0.87713 1.21075 1.05286 0.96783 0.95478 1.20359 0.96343 0.94502 0.97122 1.21874 1.00487 0.93117 0.98925 1.24124 0.97715 0.84896 0.96080 1.86789 1.71808 1.34408 1.31349 1.21783 0.99030 0.96952 0.83029 1.22369 0.97577 1.00784 0.97606 1.20444 0.92844 0.83936 0.96075 0.93305 1.42817 1.80837 1.10803 1.04176 1.19004 1.34348 0.93821 0.86883 0.91924 1.25288 1.03167 0.97802 0.98918 1.69851 1.55876 1.11067 1.26775 0.85656 0.78346 0.77618 0.81543 1.21208 1.22784 1.18131 0.93983 0.91499 0.92120 0.89824 0.93314 0.85861 0.85172 0.84139 0.84688 0.84434 0.86892 0.88842 0.89179 0.85429 0.92680 0.86758 0.91565 0.90009 0.80448 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.05 71.98 0.65 -3.19 16 2 C -0.10 -2.78 2.67 -10.72 -0.03 -2.81 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.12 3.52 5.42 86.36 0.47 3.99 16 5 N -0.61 -16.11 2.97 -818.91 -2.43 -18.55 16 6 C 0.51 13.52 7.69 87.66 0.67 14.19 16 7 O -0.58 -19.80 15.45 -3.03 -0.05 -19.84 16 8 C -0.09 -1.63 4.19 29.10 0.12 -1.51 16 9 C -0.10 -2.08 4.38 -19.83 -0.09 -2.17 16 10 C -0.08 -1.75 9.68 22.21 0.21 -1.54 16 11 C -0.15 -3.39 10.06 22.45 0.23 -3.17 16 12 C 0.08 1.85 7.03 22.68 0.16 2.01 16 13 C -0.19 -3.79 6.27 -19.53 -0.12 -3.91 16 14 C -0.07 -1.33 9.69 22.18 0.21 -1.11 16 15 C -0.11 -1.40 7.12 30.73 0.22 -1.18 16 16 C 0.05 0.56 8.01 72.56 0.58 1.14 16 17 O -0.33 -7.10 11.11 -95.15 -1.06 -8.16 16 18 C 0.11 2.84 6.08 86.36 0.53 3.37 16 19 C -0.14 -3.89 5.78 30.67 0.18 -3.71 16 20 C 0.17 5.78 2.53 45.02 0.11 5.90 16 21 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 22 N -0.74 -31.07 3.44 -322.80 -1.11 -32.18 16 23 C -0.21 -11.00 10.41 84.03 0.87 -10.13 16 24 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 25 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 26 N -0.98 -61.22 13.97 21.65 0.30 -60.92 16 27 Si 0.94 44.55 27.73 68.60 1.90 46.45 16 28 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 29 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 30 H -0.26 -11.03 6.52 99.48 0.65 -10.39 16 31 H 0.04 1.36 7.54 -2.39 -0.02 1.34 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.53 7.01 -2.39 -0.02 2.52 16 35 H 0.05 1.60 6.64 -2.39 -0.02 1.58 16 36 H 0.12 1.75 7.89 -2.39 -0.02 1.73 16 37 H 0.13 1.64 7.64 -2.39 -0.02 1.62 16 38 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.05 1.69 7.74 -2.39 -0.02 1.67 16 46 H 0.11 1.95 5.93 -2.38 -0.01 1.93 16 47 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.36 15.15 3.79 -92.71 -0.35 14.80 16 50 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.33 393.04 3.54 -69.79 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.53 Total: 30.17 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 5.45 Total: -6.77 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.24 Total: -111.65 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.10 Total: -28.00 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Total: -73.33 3.54 -69.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036125251.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.390 kcal (2) G-P(sol) polarization free energy of solvation -73.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds