Wall clock time and date at job start Wed Apr 1 2020 03:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.52370 * 2 1 4 4 C 1.53186 * 109.49894 * 120.08303 * 2 1 3 5 5 N 1.46920 * 108.77829 * 174.58402 * 4 2 1 6 6 C 1.34777 * 120.63268 * 126.36563 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.38260 * 119.98124 * 269.72692 * 9 8 6 11 11 C 1.38296 * 120.04239 * 179.78790 * 10 9 8 12 12 C 1.37968 * 119.91579 * 0.47024 * 11 10 9 13 13 C 1.38602 * 120.04154 * 359.78024 * 12 11 10 14 14 C 1.37969 * 120.03702 * 359.97438 * 13 12 11 15 15 C 1.51079 * 107.27245 * 179.97438 * 13 12 11 16 16 O 1.43949 * 105.95748 * 17.69160 * 15 13 12 17 17 C 1.43950 * 104.94629 * 331.55273 * 16 15 13 18 18 C 1.46927 * 118.74032 * 306.64801 * 5 4 2 19 19 C 1.52765 * 109.00862 * 53.30307 * 18 5 4 20 20 C 1.53035 * 109.38268 * 305.59133 * 19 18 5 21 21 H 1.09007 * 109.46249 * 301.21815 * 20 19 18 22 22 N 1.46502 * 109.46191 * 181.25904 * 20 19 18 23 23 C 1.36941 * 119.99804 * 84.92683 * 22 20 19 24 24 H 1.07994 * 119.99862 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99790 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99881 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99859 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46893 * 89.99791 * 27 25 23 29 29 H 1.48499 * 109.47032 * 209.99910 * 27 25 23 30 30 H 1.48497 * 109.47157 * 329.99957 * 27 25 23 31 31 H 1.08993 * 109.46966 * 299.91852 * 1 2 3 32 32 H 1.09000 * 109.46918 * 59.91462 * 1 2 3 33 33 H 1.08997 * 109.47060 * 179.91394 * 1 2 3 34 34 H 1.09006 * 109.58713 * 54.79544 * 4 2 1 35 35 H 1.09000 * 109.58777 * 294.37224 * 4 2 1 36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 38 38 H 1.08000 * 119.97742 * 359.97438 * 10 9 8 39 39 H 1.07996 * 120.04200 * 180.25003 * 11 10 9 40 40 H 1.07997 * 120.03442 * 179.97438 * 14 13 12 41 41 H 1.08999 * 110.15660 * 136.80841 * 15 13 12 42 42 H 1.08992 * 110.15866 * 258.49799 * 15 13 12 43 43 H 1.09001 * 110.15088 * 147.57164 * 17 16 15 44 44 H 1.08997 * 110.15235 * 269.25531 * 17 16 15 45 45 H 1.09000 * 109.59185 * 173.14463 * 18 5 4 46 46 H 1.09004 * 109.58365 * 293.56750 * 18 5 4 47 47 H 1.09003 * 109.56176 * 185.55325 * 19 18 5 48 48 H 1.08994 * 109.38177 * 65.52180 * 19 18 5 49 49 H 0.97002 * 120.00025 * 264.94024 * 22 20 19 50 50 H 0.97002 * 119.99728 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5046 -0.8292 1.1695 6 6 4.2812 -0.3857 2.1778 7 8 3.7733 0.1057 3.1634 8 6 5.7807 -0.5003 2.0805 9 6 6.4096 0.0633 3.3287 10 6 6.7525 1.4014 3.3860 11 6 7.3256 1.9209 4.5324 12 6 7.5638 1.0999 5.6153 13 6 7.2248 -0.2427 5.5561 14 6 6.6484 -0.7597 4.4142 15 6 7.6074 -0.8608 6.8805 16 8 7.7674 0.2368 7.7980 17 6 8.1657 1.3509 6.9781 18 6 4.1055 -1.4216 -0.0333 19 6 3.5708 -0.6949 -1.2661 20 6 2.0408 -0.7230 -1.2484 21 1 1.6967 -1.7573 -1.2354 22 7 1.5264 -0.0528 -2.4453 23 6 1.3964 -0.7491 -3.6173 24 1 1.6726 -1.7923 -3.6591 25 6 0.9095 -0.1139 -4.7515 26 7 0.5733 1.1576 -4.7005 27 14 0.7314 -1.0639 -6.3501 28 1 -0.6205 -1.6749 -6.4148 29 1 0.9122 -0.1393 -7.4980 30 1 1.7609 -2.1324 -6.4082 31 1 -0.3633 0.5125 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0276 -0.0015 34 1 1.6052 -1.7217 1.2979 35 1 1.7639 -0.1580 2.1388 36 1 6.1322 0.0575 1.2125 37 1 6.0589 -1.5490 1.9755 38 1 6.5698 2.0422 2.5360 39 1 7.5897 2.9670 4.5786 40 1 6.3847 -1.8060 4.3679 41 1 6.8171 -1.5271 7.2263 42 1 8.5442 -1.4092 6.7824 43 1 7.7783 2.2809 7.3944 44 1 9.2525 1.3955 6.9074 45 1 5.1895 -1.3160 0.0098 46 1 3.8412 -2.4775 -0.0917 47 1 3.9334 -1.1896 -2.1672 48 1 3.9159 0.3389 -1.2547 49 1 1.2781 0.8841 -2.4076 50 1 0.2327 1.6013 -5.4930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036269794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:28 Heat of formation + Delta-G solvation = -39.277694 kcal Electronic energy + Delta-G solvation = -29803.705947 eV Core-core repulsion = 25795.893348 eV Total energy + Delta-G solvation = -4007.812599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.01295 -40.12766 -38.14921 -37.30100 -34.64489 -33.32034 -32.63242 -31.76325 -31.51133 -29.53601 -29.14725 -27.71568 -26.16749 -25.04231 -24.24580 -22.82667 -22.00740 -21.72064 -21.27501 -19.83293 -18.86472 -17.21542 -17.05448 -16.93183 -16.68091 -16.39210 -15.98296 -15.42752 -14.99701 -14.96077 -14.54776 -14.18566 -14.07088 -13.79692 -13.65701 -13.43331 -13.33240 -13.16484 -12.94782 -12.84712 -12.51761 -12.35965 -12.08805 -12.07175 -11.83003 -11.61853 -11.55239 -11.21109 -11.10679 -10.97128 -10.84694 -10.66293 -10.43965 -10.37792 -10.23265 -9.82580 -9.73719 -9.65507 -9.08161 -8.94618 -8.69181 -8.50034 -7.00709 -5.81516 -3.10363 0.94211 1.10308 2.64941 3.00721 3.39154 3.44363 3.45743 3.46231 3.59981 3.88521 4.31288 4.47067 4.53577 4.60098 4.65284 4.87689 4.98246 5.02000 5.05294 5.09605 5.17732 5.21171 5.22858 5.24848 5.27587 5.33056 5.40286 5.48953 5.56290 5.63664 5.65850 5.75800 5.79860 5.93883 6.00864 6.04592 6.05603 6.11708 6.26064 6.29143 6.35212 6.39447 6.40396 6.49801 6.59872 6.66808 6.77346 6.89158 7.01297 7.48446 7.64538 8.21496 8.36664 9.48105 10.05526 10.40283 11.40883 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026601 B = 0.001964 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.338285 B =14251.313508 C =14464.797851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.068 0.932 4 C 0.120 3.880 5 N -0.607 5.607 6 C 0.515 3.485 7 O -0.540 6.540 8 C -0.103 4.103 9 C -0.054 4.054 10 C -0.098 4.098 11 C -0.090 4.090 12 C -0.137 4.137 13 C -0.133 4.133 14 C -0.078 4.078 15 C 0.092 3.908 16 O -0.363 6.363 17 C 0.092 3.908 18 C 0.106 3.894 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.721 5.721 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.492 -3.483 19.417 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.087 0.913 4 C -0.002 4.002 5 N -0.340 5.340 6 C 0.303 3.697 7 O -0.418 6.418 8 C -0.143 4.143 9 C -0.055 4.055 10 C -0.116 4.116 11 C -0.109 4.109 12 C -0.137 4.137 13 C -0.133 4.133 14 C -0.096 4.096 15 C 0.016 3.984 16 O -0.281 6.281 17 C 0.016 3.984 18 C -0.017 4.017 19 C -0.194 4.194 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.165 -3.351 20.020 25.338 hybrid contribution -0.163 -0.160 -1.469 1.486 sum 15.003 -3.511 18.551 24.115 Atomic orbital electron populations 1.21658 0.94132 1.01769 1.01843 1.21738 0.96586 1.00007 0.94616 0.91312 1.21701 0.78457 1.00754 0.99323 1.48180 1.07185 1.60598 1.18008 1.20397 0.88744 0.77875 0.82676 1.90707 1.75370 1.44546 1.31142 1.20725 0.92613 1.03655 0.97275 1.19274 0.97773 0.93847 0.94578 1.21001 0.97990 0.94566 0.98073 1.20320 0.99260 0.99323 0.91947 1.20998 1.00977 0.95003 0.96759 1.20930 1.00657 0.95284 0.96456 1.20162 0.98150 0.99883 0.91424 1.21727 1.01340 0.89892 0.85447 1.89081 1.89777 1.19797 1.29460 1.21730 0.98740 0.91180 0.86772 1.21806 0.97557 0.97555 0.84799 1.22617 1.00491 1.00451 0.95861 1.20192 0.90332 0.95705 0.86443 0.93428 1.42413 1.76483 1.11432 1.05756 1.19207 1.36004 0.94080 0.87680 0.91235 1.24739 1.02070 0.96020 0.98078 1.69658 1.49918 1.09451 1.28943 0.86221 0.77789 0.78666 0.83673 1.21765 1.21841 1.20811 0.93833 0.90755 0.93055 0.91653 0.89438 0.87565 0.87852 0.85408 0.85642 0.85872 0.88526 0.90569 0.88573 0.90610 0.90480 0.91410 0.90489 0.92208 0.78216 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.02 37.16 0.34 -1.86 16 2 C -0.11 -1.76 2.46 -90.50 -0.22 -1.98 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.12 1.71 5.72 -3.72 -0.02 1.69 16 5 N -0.61 -8.01 2.98 -173.03 -0.52 -8.52 16 6 C 0.52 6.95 7.69 -10.98 -0.08 6.87 16 7 O -0.54 -9.29 15.45 5.56 0.09 -9.20 16 8 C -0.10 -1.00 4.18 -29.03 -0.12 -1.12 16 9 C -0.05 -0.59 4.38 -104.59 -0.46 -1.04 16 10 C -0.10 -1.04 9.70 -39.55 -0.38 -1.42 16 11 C -0.09 -0.89 10.04 -39.66 -0.40 -1.29 16 12 C -0.14 -1.40 6.32 -104.40 -0.66 -2.06 16 13 C -0.13 -1.38 6.32 -104.40 -0.66 -2.04 16 14 C -0.08 -0.82 9.70 -39.66 -0.38 -1.20 16 15 C 0.09 0.81 7.63 36.19 0.28 1.09 16 16 O -0.36 -3.80 11.72 -35.23 -0.41 -4.21 16 17 C 0.09 0.79 7.63 36.19 0.28 1.06 16 18 C 0.11 1.24 6.31 -3.93 -0.02 1.22 16 19 C -0.15 -2.39 5.64 -26.83 -0.15 -2.54 16 20 C 0.18 3.34 2.19 -67.89 -0.15 3.19 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.86 4.41 -53.38 -0.24 -17.10 16 23 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 27 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 36 H 0.11 0.88 7.62 -51.93 -0.40 0.48 16 37 H 0.10 0.76 7.90 -51.93 -0.41 0.35 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.38 9.76 7.50 -40.82 -0.31 9.46 16 50 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -32.49 400.14 -10.48 -42.96 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.05 Total: 8.23 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.08 Total: -8.29 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.03 Total: -52.19 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.33 Total: -13.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.49 -10.48 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036269794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.683 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds