Wall clock time and date at job start Wed Apr 1 2020 03:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.52370 * 2 1 4 4 C 1.53186 * 109.49894 * 120.08303 * 2 1 3 5 5 N 1.46920 * 108.77829 * 174.58402 * 4 2 1 6 6 C 1.34777 * 120.63268 * 126.36563 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.38260 * 119.98124 * 269.72692 * 9 8 6 11 11 C 1.38296 * 120.04239 * 179.78790 * 10 9 8 12 12 C 1.37968 * 119.91579 * 0.47024 * 11 10 9 13 13 C 1.38602 * 120.04154 * 359.78024 * 12 11 10 14 14 C 1.37969 * 120.03702 * 359.97438 * 13 12 11 15 15 C 1.51079 * 107.27245 * 179.97438 * 13 12 11 16 16 O 1.43949 * 105.95748 * 17.69160 * 15 13 12 17 17 C 1.43950 * 104.94629 * 331.55273 * 16 15 13 18 18 C 1.46927 * 118.74032 * 306.64801 * 5 4 2 19 19 C 1.52765 * 109.00862 * 53.30307 * 18 5 4 20 20 C 1.53035 * 109.38268 * 305.59133 * 19 18 5 21 21 H 1.09007 * 109.46249 * 301.21815 * 20 19 18 22 22 N 1.46502 * 109.46191 * 181.25904 * 20 19 18 23 23 C 1.36941 * 119.99804 * 84.92683 * 22 20 19 24 24 H 1.07994 * 119.99862 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99790 * 180.02562 * 23 22 20 26 26 N 1.31617 * 119.99881 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99859 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46893 * 89.99791 * 27 25 23 29 29 H 1.48499 * 109.47032 * 209.99910 * 27 25 23 30 30 H 1.48497 * 109.47157 * 329.99957 * 27 25 23 31 31 H 1.08993 * 109.46966 * 299.91852 * 1 2 3 32 32 H 1.09000 * 109.46918 * 59.91462 * 1 2 3 33 33 H 1.08997 * 109.47060 * 179.91394 * 1 2 3 34 34 H 1.09006 * 109.58713 * 54.79544 * 4 2 1 35 35 H 1.09000 * 109.58777 * 294.37224 * 4 2 1 36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 38 38 H 1.08000 * 119.97742 * 359.97438 * 10 9 8 39 39 H 1.07996 * 120.04200 * 180.25003 * 11 10 9 40 40 H 1.07997 * 120.03442 * 179.97438 * 14 13 12 41 41 H 1.08999 * 110.15660 * 136.80841 * 15 13 12 42 42 H 1.08992 * 110.15866 * 258.49799 * 15 13 12 43 43 H 1.09001 * 110.15088 * 147.57164 * 17 16 15 44 44 H 1.08997 * 110.15235 * 269.25531 * 17 16 15 45 45 H 1.09000 * 109.59185 * 173.14463 * 18 5 4 46 46 H 1.09004 * 109.58365 * 293.56750 * 18 5 4 47 47 H 1.09003 * 109.56176 * 185.55325 * 19 18 5 48 48 H 1.08994 * 109.38177 * 65.52180 * 19 18 5 49 49 H 0.97002 * 120.00025 * 264.94024 * 22 20 19 50 50 H 0.97002 * 119.99728 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 1.2495 5 7 3.5046 -0.8292 1.1695 6 6 4.2812 -0.3857 2.1778 7 8 3.7733 0.1057 3.1634 8 6 5.7807 -0.5003 2.0805 9 6 6.4096 0.0633 3.3287 10 6 6.7525 1.4014 3.3860 11 6 7.3256 1.9209 4.5324 12 6 7.5638 1.0999 5.6153 13 6 7.2248 -0.2427 5.5561 14 6 6.6484 -0.7597 4.4142 15 6 7.6074 -0.8608 6.8805 16 8 7.7674 0.2368 7.7980 17 6 8.1657 1.3509 6.9781 18 6 4.1055 -1.4216 -0.0333 19 6 3.5708 -0.6949 -1.2661 20 6 2.0408 -0.7230 -1.2484 21 1 1.6967 -1.7573 -1.2354 22 7 1.5264 -0.0528 -2.4453 23 6 1.3964 -0.7491 -3.6173 24 1 1.6726 -1.7923 -3.6591 25 6 0.9095 -0.1139 -4.7515 26 7 0.5733 1.1576 -4.7005 27 14 0.7314 -1.0639 -6.3501 28 1 -0.6205 -1.6749 -6.4148 29 1 0.9122 -0.1393 -7.4980 30 1 1.7609 -2.1324 -6.4082 31 1 -0.3633 0.5125 0.8907 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3633 -1.0276 -0.0015 34 1 1.6052 -1.7217 1.2979 35 1 1.7639 -0.1580 2.1388 36 1 6.1322 0.0575 1.2125 37 1 6.0589 -1.5490 1.9755 38 1 6.5698 2.0422 2.5360 39 1 7.5897 2.9670 4.5786 40 1 6.3847 -1.8060 4.3679 41 1 6.8171 -1.5271 7.2263 42 1 8.5442 -1.4092 6.7824 43 1 7.7783 2.2809 7.3944 44 1 9.2525 1.3955 6.9074 45 1 5.1895 -1.3160 0.0098 46 1 3.8412 -2.4775 -0.0917 47 1 3.9334 -1.1896 -2.1672 48 1 3.9159 0.3389 -1.2547 49 1 1.2781 0.8841 -2.4076 50 1 0.2327 1.6013 -5.4930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036269794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:27 Heat of formation + Delta-G solvation = -58.375428 kcal Electronic energy + Delta-G solvation = -29804.534087 eV Core-core repulsion = 25795.893348 eV Total energy + Delta-G solvation = -4008.640739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.77044 -41.15944 -39.23176 -38.25812 -36.14493 -34.59535 -33.71775 -33.00043 -32.46783 -31.04642 -30.06003 -28.49925 -27.32520 -26.54454 -25.14001 -24.27505 -23.05662 -22.69357 -22.13459 -21.11890 -19.96997 -19.01620 -18.17966 -17.64991 -17.37276 -17.18089 -16.88379 -16.74144 -16.39528 -15.86524 -15.69171 -15.47119 -15.23621 -15.02497 -14.82561 -14.68503 -14.30111 -14.10718 -13.98001 -13.72313 -13.61284 -13.46134 -13.13860 -13.01577 -12.89468 -12.84739 -12.80588 -12.73588 -12.46742 -12.27762 -12.13579 -12.00473 -11.83397 -11.81826 -11.64911 -11.13690 -11.10681 -10.92503 -10.75418 -9.81051 -9.63326 -9.42115 -8.95050 -7.90200 -5.17580 0.19365 0.37109 1.49308 1.50120 1.58137 1.63453 2.02431 2.58705 2.67776 2.95066 3.19558 3.43205 3.62527 3.64153 3.74593 3.80752 3.93620 3.97919 4.06279 4.12633 4.23608 4.33119 4.37853 4.42081 4.42629 4.44149 4.51950 4.53482 4.59558 4.60186 4.68690 4.75239 4.80476 4.83316 4.85500 4.93848 5.00962 5.03499 5.09690 5.20047 5.30480 5.32198 5.34728 5.41072 5.52885 5.55181 5.58187 5.66623 5.70953 5.95639 6.31217 6.45775 7.18475 7.37729 8.14481 8.37151 9.33354 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.026601 B = 0.001964 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.338285 B =14251.313508 C =14464.797851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.050 0.950 4 C 0.127 3.873 5 N -0.608 5.608 6 C 0.514 3.486 7 O -0.582 6.582 8 C -0.096 4.096 9 C -0.069 4.069 10 C -0.114 4.114 11 C -0.099 4.099 12 C -0.150 4.150 13 C -0.148 4.148 14 C -0.089 4.089 15 C 0.091 3.909 16 O -0.384 6.384 17 C 0.090 3.910 18 C 0.113 3.887 19 C -0.144 4.144 20 C 0.178 3.822 21 H 0.048 0.952 22 N -0.733 5.733 23 C -0.228 4.228 24 H 0.079 0.921 25 C -0.079 4.079 26 N -0.971 5.971 27 Si 0.968 3.032 28 H -0.292 1.292 29 H -0.301 1.301 30 H -0.266 1.266 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.138 0.862 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.370 0.630 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.361 -5.420 20.224 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.069 0.931 4 C 0.004 3.996 5 N -0.340 5.340 6 C 0.304 3.696 7 O -0.462 6.462 8 C -0.135 4.135 9 C -0.069 4.069 10 C -0.132 4.132 11 C -0.117 4.117 12 C -0.151 4.151 13 C -0.148 4.148 14 C -0.107 4.107 15 C 0.015 3.985 16 O -0.303 6.303 17 C 0.015 3.985 18 C -0.009 4.009 19 C -0.185 4.185 20 C 0.069 3.931 21 H 0.066 0.934 22 N -0.372 5.372 23 C -0.360 4.360 24 H 0.097 0.903 25 C -0.271 4.271 26 N -0.623 5.623 27 Si 0.798 3.202 28 H -0.219 1.219 29 H -0.228 1.228 30 H -0.191 1.191 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.065 0.935 49 H 0.201 0.799 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.074 -5.343 20.850 27.473 hybrid contribution -0.744 0.451 -1.616 1.835 sum 16.330 -4.892 19.234 25.701 Atomic orbital electron populations 1.21580 0.94285 1.01960 1.01047 1.21597 0.96450 0.99040 0.94812 0.93097 1.21530 0.79640 1.01028 0.97393 1.48251 1.06667 1.60527 1.18528 1.21047 0.90220 0.76554 0.81801 1.90693 1.76416 1.46290 1.32816 1.20780 0.89342 1.05860 0.97536 1.19474 0.98123 0.94088 0.95230 1.21251 0.98348 0.94945 0.98692 1.20592 0.98995 1.00353 0.91758 1.21305 1.01078 0.95207 0.97486 1.21234 1.00723 0.95753 0.97109 1.20408 0.98117 1.00736 0.91422 1.21866 1.02549 0.89609 0.84485 1.89048 1.90062 1.20717 1.30477 1.21882 0.99811 0.91039 0.85804 1.21874 0.99442 0.97605 0.81976 1.22404 0.97997 1.00284 0.97807 1.20452 0.92120 0.95230 0.85276 0.93413 1.42611 1.76932 1.10853 1.06755 1.19599 1.33546 0.94412 0.88400 0.90312 1.25500 1.03346 0.96921 1.01346 1.69822 1.52129 1.11103 1.29222 0.85216 0.77800 0.77508 0.79716 1.21924 1.22841 1.19114 0.91999 0.94137 0.92304 0.90084 0.90346 0.85731 0.84777 0.84727 0.83836 0.84429 0.87898 0.88643 0.87657 0.88732 0.86774 0.89510 0.91267 0.93544 0.79879 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.02 71.98 0.65 -3.57 16 2 C -0.10 -3.15 2.46 -10.72 -0.03 -3.17 16 3 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 4 C 0.13 3.42 5.72 86.36 0.49 3.91 16 5 N -0.61 -14.49 2.98 -819.74 -2.44 -16.93 16 6 C 0.51 12.71 7.69 87.66 0.67 13.38 16 7 O -0.58 -19.42 15.45 -3.02 -0.05 -19.47 16 8 C -0.10 -1.56 4.18 29.10 0.12 -1.44 16 9 C -0.07 -1.35 4.38 -19.85 -0.09 -1.44 16 10 C -0.11 -2.27 9.70 22.29 0.22 -2.05 16 11 C -0.10 -1.84 10.04 22.22 0.22 -1.61 16 12 C -0.15 -2.88 6.32 -19.72 -0.12 -3.01 16 13 C -0.15 -2.88 6.32 -19.72 -0.12 -3.01 16 14 C -0.09 -1.70 9.70 22.22 0.22 -1.49 16 15 C 0.09 1.46 7.63 71.36 0.54 2.01 16 16 O -0.38 -7.59 11.72 -148.98 -1.75 -9.33 16 17 C 0.09 1.42 7.63 71.36 0.54 1.97 16 18 C 0.11 2.25 6.31 86.22 0.54 2.80 16 19 C -0.14 -4.24 5.64 30.53 0.17 -4.06 16 20 C 0.18 6.32 2.19 45.02 0.10 6.42 16 21 H 0.05 1.71 8.08 -2.38 -0.02 1.69 16 22 N -0.73 -34.69 4.41 -322.81 -1.42 -36.11 16 23 C -0.23 -11.91 9.93 84.03 0.83 -11.08 16 24 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 25 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 26 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 27 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 28 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.57 7.36 -2.39 -0.02 1.55 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 35 H 0.08 2.30 7.00 -2.39 -0.02 2.28 16 36 H 0.12 1.59 7.62 -2.39 -0.02 1.57 16 37 H 0.13 1.36 7.90 -2.39 -0.02 1.34 16 38 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 1.50 5.93 -2.39 -0.01 1.48 16 46 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.37 19.45 7.50 -92.71 -0.70 18.76 16 50 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -72.01 400.14 2.33 -69.68 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.24 Total: 32.82 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.44 Total: -9.39 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -3.58 Total: -111.25 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.79 Total: -28.80 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.01 2.33 -69.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036269794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.301 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds