Wall clock time and date at job start Wed Apr 1 2020 03:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99782 * 2 1 4 4 C 1.38748 * 120.05737 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94558 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05683 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.10781 * 0.25239 * 6 5 4 8 8 C 1.50697 * 119.96720 * 179.72044 * 7 6 5 9 9 H 1.09004 * 109.46865 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47178 * 60.00412 * 8 7 6 11 11 C 1.50698 * 109.47677 * 299.99904 * 8 7 6 12 12 O 1.21283 * 119.99775 * 0.02562 * 11 8 7 13 13 N 1.34772 * 120.00205 * 180.02562 * 11 8 7 14 14 C 1.46668 * 125.33912 * 180.02562 * 13 11 8 15 15 C 1.53724 * 107.94474 * 180.54518 * 14 13 11 16 16 H 1.09000 * 112.56104 * 139.71850 * 15 14 13 17 17 C 1.53693 * 109.34032 * 266.25239 * 15 14 13 18 18 N 1.46642 * 108.00861 * 127.55456 * 17 15 14 19 19 C 1.36937 * 125.32958 * 180.81601 * 18 17 15 20 20 H 1.07998 * 119.99950 * 174.01873 * 19 18 17 21 21 C 1.38816 * 119.99855 * 354.00901 * 19 18 17 22 22 N 1.31620 * 119.99930 * 6.94582 * 21 19 18 23 23 Si 1.86793 * 119.99818 * 186.94348 * 21 19 18 24 24 H 1.48501 * 109.47248 * 94.98986 * 23 21 19 25 25 H 1.48504 * 109.47308 * 214.98861 * 23 21 19 26 26 H 1.48498 * 109.47391 * 334.98600 * 23 21 19 27 27 C 1.46747 * 109.34009 * 0.83721 * 18 17 15 28 28 C 1.53933 * 106.72250 * 341.65727 * 27 18 17 29 29 H 1.08997 * 113.00838 * 150.83018 * 28 27 18 30 30 C 1.46774 * 125.33877 * 359.69603 * 13 11 8 31 31 C 1.38168 * 120.05488 * 359.44626 * 7 6 5 32 32 H 1.08997 * 109.47066 * 299.99732 * 1 2 3 33 33 H 1.08994 * 109.47396 * 59.99783 * 1 2 3 34 34 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 35 35 H 1.08007 * 120.02547 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.97248 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.94177 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47284 * 59.99216 * 10 8 7 39 39 H 1.09003 * 109.47323 * 179.97438 * 10 8 7 40 40 H 1.09004 * 109.46812 * 299.99529 * 10 8 7 41 41 H 1.09005 * 109.77104 * 300.16636 * 14 13 11 42 42 H 1.09000 * 109.77424 * 60.92216 * 14 13 11 43 43 H 1.09002 * 109.75956 * 247.19737 * 17 15 14 44 44 H 1.09000 * 109.76407 * 7.91622 * 17 15 14 45 45 H 0.96998 * 120.00234 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.00862 * 222.34183 * 27 18 17 47 47 H 1.09004 * 110.01166 * 100.97662 * 27 18 17 48 48 H 1.09004 * 110.03132 * 280.77422 * 30 13 11 49 49 H 1.08998 * 110.02575 * 42.19053 * 30 13 11 50 50 H 1.07999 * 120.02484 * 180.29597 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6759 0.0005 7 6 4.0560 2.5172 -0.0058 8 6 5.5607 2.5984 -0.0127 9 1 5.9789 1.5917 -0.0167 10 6 6.0371 3.3430 1.2361 11 6 6.0184 3.3377 -1.2436 12 8 5.2028 3.7578 -2.0369 13 7 7.3338 3.5321 -1.4628 14 6 7.9071 4.2330 -2.6166 15 6 9.4374 4.2103 -2.4721 16 1 9.9444 4.0328 -3.4205 17 6 9.9018 5.4979 -1.7730 18 7 10.7453 5.1172 -0.6355 19 6 11.3340 5.9895 0.2407 20 1 11.8596 5.6134 1.1060 21 6 11.2552 7.3572 0.0167 22 7 10.5025 7.8222 -0.9577 23 14 12.2175 8.5376 1.0983 24 1 13.5114 8.8636 0.4464 25 1 11.4330 9.7836 1.2915 26 1 12.4733 7.9043 2.4169 27 6 10.8601 3.6552 -0.5834 28 6 9.7047 3.0897 -1.4289 29 1 9.9402 2.1270 -1.8824 30 6 8.4171 3.0814 -0.5810 31 6 3.4311 1.2849 -0.0001 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2127 2.3203 0.0014 36 1 1.3339 4.5114 0.0019 37 1 3.7921 4.6382 0.0005 38 1 5.7060 2.8082 2.1264 39 1 7.1255 3.4013 1.2313 40 1 5.6189 4.3496 1.2405 41 1 7.6161 3.7272 -3.5372 42 1 7.5537 5.2640 -2.6346 43 1 10.4761 6.1088 -2.4695 44 1 9.0362 6.0578 -1.4189 45 1 10.4472 8.7779 -1.1140 46 1 10.7717 3.3106 0.4469 47 1 11.8166 3.3410 -1.0013 48 1 8.5186 3.7625 0.2640 49 1 8.2128 2.0718 -0.2246 50 1 4.0207 0.3800 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049237045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:24 Heat of formation + Delta-G solvation = -12.031385 kcal Electronic energy + Delta-G solvation = -30639.216879 eV Core-core repulsion = 26632.585769 eV Total energy + Delta-G solvation = -4006.631111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.67018 -39.98931 -38.57901 -37.31098 -34.94803 -33.98711 -32.24080 -30.92993 -30.34609 -29.45174 -28.95293 -27.50972 -25.79547 -25.51281 -24.55031 -22.91222 -22.65615 -21.20573 -20.11535 -19.40726 -19.13243 -17.68843 -17.18544 -16.75738 -16.28766 -16.02720 -15.93553 -15.66610 -15.21227 -14.86320 -14.51766 -14.12052 -13.83240 -13.75964 -13.50507 -13.32515 -13.13059 -12.89406 -12.62815 -12.47961 -12.33310 -12.13864 -11.95824 -11.88223 -11.60652 -11.53449 -11.37934 -11.24887 -11.10540 -10.90554 -10.85136 -10.77982 -10.41325 -10.09788 -10.08752 -9.89215 -9.66801 -9.52063 -8.89994 -8.61059 -8.28783 -8.23387 -6.86435 -5.76782 -3.09700 1.22218 1.43185 2.84129 3.04088 3.27184 3.37682 3.43066 3.45236 3.75710 4.46421 4.48297 4.60165 4.68074 4.83299 4.85508 4.87715 4.93285 5.00530 5.11954 5.16715 5.18266 5.25394 5.33585 5.41422 5.46249 5.53244 5.57151 5.61644 5.67646 5.76545 5.79486 5.85850 5.94465 5.97801 6.11862 6.18868 6.21296 6.28536 6.37978 6.41227 6.53214 6.56737 6.57741 6.64544 6.67230 6.79582 7.26029 7.51230 7.57897 7.78274 7.80582 8.23108 8.39565 9.18167 9.79029 10.42951 11.34944 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.002447 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.219879 B =11438.856594 C =11905.189146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.117 4.117 7 C -0.023 4.023 8 C -0.067 4.067 9 H 0.103 0.897 10 C -0.151 4.151 11 C 0.531 3.469 12 O -0.539 6.539 13 N -0.605 5.605 14 C 0.121 3.879 15 C -0.123 4.123 16 H 0.090 0.910 17 C 0.184 3.816 18 N -0.602 5.602 19 C -0.232 4.232 20 H 0.079 0.921 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.145 3.855 28 C -0.113 4.113 29 H 0.090 0.910 30 C 0.110 3.890 31 C -0.144 4.144 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.253 0.747 46 H 0.037 0.963 47 H 0.020 0.980 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.419 -14.820 2.062 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.135 4.135 7 C -0.024 4.024 8 C -0.088 4.088 9 H 0.121 0.879 10 C -0.208 4.208 11 C 0.319 3.681 12 O -0.416 6.416 13 N -0.338 5.338 14 C -0.001 4.001 15 C -0.143 4.143 16 H 0.108 0.892 17 C 0.059 3.941 18 N -0.329 5.329 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.019 3.981 28 C -0.133 4.133 29 H 0.108 0.892 30 C -0.013 4.013 31 C -0.163 4.163 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.038 0.962 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.843 -14.553 1.681 21.578 hybrid contribution 0.281 0.849 0.437 0.995 sum -15.562 -13.704 2.118 20.844 Atomic orbital electron populations 1.23018 0.78629 1.03703 1.01295 1.86050 1.21187 1.27098 1.89059 1.18872 0.92120 0.84035 0.97469 1.21175 0.99727 0.92466 1.09421 1.20891 0.94522 0.96918 0.97732 1.20884 0.93493 0.98271 1.00878 1.19096 0.93543 0.92520 0.97223 1.20231 0.92473 1.01259 0.94816 0.87905 1.21981 1.02976 1.00665 0.95179 1.19986 0.80759 0.80223 0.87102 1.90705 1.52095 1.51265 1.47510 1.48216 1.05017 1.56056 1.24550 1.21814 0.93155 0.97322 0.87830 1.23150 0.93492 0.98533 0.99080 0.89158 1.21119 0.94770 0.89474 0.88692 1.44211 1.57818 0.99267 1.31570 1.19022 1.27529 0.86734 1.02687 0.90359 1.24825 0.99925 0.96842 0.98613 1.69970 1.41151 1.12501 1.32873 0.86132 0.79535 0.80745 0.79547 1.21611 1.21803 1.20620 1.21164 0.94130 0.86229 0.96607 1.22972 0.95227 0.98464 0.96592 0.89192 1.22274 0.85894 0.99142 0.93987 1.20199 0.91385 0.97771 1.06896 0.92759 0.92739 0.88411 0.85777 0.85823 0.85901 0.91305 0.90335 0.91661 0.92407 0.90936 0.93492 0.93415 0.93681 0.94464 0.96188 0.89821 0.91640 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.55 10.50 -19.44 -0.20 -3.76 16 3 C 0.12 1.46 6.69 -39.22 -0.26 1.20 16 4 C -0.21 -2.33 9.04 -39.44 -0.36 -2.69 16 5 C -0.08 -0.98 10.04 -39.61 -0.40 -1.38 16 6 C -0.12 -1.60 7.93 -39.56 -0.31 -1.91 16 7 C -0.02 -0.31 4.40 -104.64 -0.46 -0.77 16 8 C -0.07 -0.86 2.29 -92.93 -0.21 -1.07 16 9 H 0.10 1.11 7.61 -51.93 -0.40 0.72 16 10 C -0.15 -1.80 8.82 37.16 0.33 -1.47 16 11 C 0.53 8.69 7.07 -10.99 -0.08 8.62 16 12 O -0.54 -10.54 15.41 5.55 0.09 -10.45 16 13 N -0.61 -9.80 3.31 -172.16 -0.57 -10.37 16 14 C 0.12 2.08 6.23 -3.57 -0.02 2.05 16 15 C -0.12 -2.15 4.02 -88.60 -0.36 -2.50 16 16 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 17 C 0.18 4.23 4.76 -3.60 -0.02 4.21 16 18 N -0.60 -14.39 3.37 -171.92 -0.58 -14.97 16 19 C -0.23 -6.17 10.24 -15.06 -0.15 -6.32 16 20 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 21 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 22 N -0.92 -26.34 10.30 55.49 0.57 -25.77 16 23 Si 0.91 21.63 29.56 -169.99 -5.02 16.61 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.15 2.72 6.37 -3.42 -0.02 2.70 16 28 C -0.11 -1.75 4.19 -88.24 -0.37 -2.12 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 30 C 0.11 1.61 4.47 -3.28 -0.01 1.60 16 31 C -0.14 -1.82 9.61 -39.43 -0.38 -2.20 16 32 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 33 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.12 1.06 6.30 -52.48 -0.33 0.73 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.75 7.51 -52.49 -0.39 1.35 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.96 4.84 -51.93 -0.25 0.71 16 40 H 0.06 0.84 7.39 -51.93 -0.38 0.46 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.39 7.44 -51.93 -0.39 1.00 16 43 H 0.05 1.22 7.32 -51.93 -0.38 0.84 16 44 H 0.05 1.24 6.67 -51.93 -0.35 0.90 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.04 0.66 7.95 -51.93 -0.41 0.25 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 1.40 6.23 -51.93 -0.32 1.07 16 49 H 0.07 0.77 7.61 -51.93 -0.40 0.37 16 50 H 0.13 1.42 7.94 -52.49 -0.42 1.00 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -32.46 388.39 -9.78 -42.24 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.72 Total: 1.72 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.19 Total: -1.10 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.58 Total: -51.11 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.12 Total: -14.21 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.46 -9.78 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049237045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.206 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds