Wall clock time and date at job start Wed Apr 1 2020 03:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99782 * 2 1 4 4 C 1.38748 * 120.05737 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94558 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05683 * 0.02562 * 5 4 3 7 7 C 1.38249 * 120.10781 * 0.25239 * 6 5 4 8 8 C 1.50697 * 119.96720 * 179.72044 * 7 6 5 9 9 H 1.09004 * 109.46865 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47178 * 60.00412 * 8 7 6 11 11 C 1.50698 * 109.47677 * 299.99904 * 8 7 6 12 12 O 1.21283 * 119.99775 * 0.02562 * 11 8 7 13 13 N 1.34772 * 120.00205 * 180.02562 * 11 8 7 14 14 C 1.46668 * 125.33912 * 180.02562 * 13 11 8 15 15 C 1.53724 * 107.94474 * 180.54518 * 14 13 11 16 16 H 1.09000 * 112.56104 * 139.71850 * 15 14 13 17 17 C 1.53693 * 109.34032 * 266.25239 * 15 14 13 18 18 N 1.46642 * 108.00861 * 127.55456 * 17 15 14 19 19 C 1.36937 * 125.32958 * 180.81601 * 18 17 15 20 20 H 1.07998 * 119.99950 * 174.01873 * 19 18 17 21 21 C 1.38816 * 119.99855 * 354.00901 * 19 18 17 22 22 N 1.31620 * 119.99930 * 6.94582 * 21 19 18 23 23 Si 1.86793 * 119.99818 * 186.94348 * 21 19 18 24 24 H 1.48501 * 109.47248 * 94.98986 * 23 21 19 25 25 H 1.48504 * 109.47308 * 214.98861 * 23 21 19 26 26 H 1.48498 * 109.47391 * 334.98600 * 23 21 19 27 27 C 1.46747 * 109.34009 * 0.83721 * 18 17 15 28 28 C 1.53933 * 106.72250 * 341.65727 * 27 18 17 29 29 H 1.08997 * 113.00838 * 150.83018 * 28 27 18 30 30 C 1.46774 * 125.33877 * 359.69603 * 13 11 8 31 31 C 1.38168 * 120.05488 * 359.44626 * 7 6 5 32 32 H 1.08997 * 109.47066 * 299.99732 * 1 2 3 33 33 H 1.08994 * 109.47396 * 59.99783 * 1 2 3 34 34 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 35 35 H 1.08007 * 120.02547 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.97248 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.94177 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47284 * 59.99216 * 10 8 7 39 39 H 1.09003 * 109.47323 * 179.97438 * 10 8 7 40 40 H 1.09004 * 109.46812 * 299.99529 * 10 8 7 41 41 H 1.09005 * 109.77104 * 300.16636 * 14 13 11 42 42 H 1.09000 * 109.77424 * 60.92216 * 14 13 11 43 43 H 1.09002 * 109.75956 * 247.19737 * 17 15 14 44 44 H 1.09000 * 109.76407 * 7.91622 * 17 15 14 45 45 H 0.96998 * 120.00234 * 179.97438 * 22 21 19 46 46 H 1.09000 * 110.00862 * 222.34183 * 27 18 17 47 47 H 1.09004 * 110.01166 * 100.97662 * 27 18 17 48 48 H 1.09004 * 110.03132 * 280.77422 * 30 13 11 49 49 H 1.08998 * 110.02575 * 42.19053 * 30 13 11 50 50 H 1.07999 * 120.02484 * 180.29597 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6759 0.0005 7 6 4.0560 2.5172 -0.0058 8 6 5.5607 2.5984 -0.0127 9 1 5.9789 1.5917 -0.0167 10 6 6.0371 3.3430 1.2361 11 6 6.0184 3.3377 -1.2436 12 8 5.2028 3.7578 -2.0369 13 7 7.3338 3.5321 -1.4628 14 6 7.9071 4.2330 -2.6166 15 6 9.4374 4.2103 -2.4721 16 1 9.9444 4.0328 -3.4205 17 6 9.9018 5.4979 -1.7730 18 7 10.7453 5.1172 -0.6355 19 6 11.3340 5.9895 0.2407 20 1 11.8596 5.6134 1.1060 21 6 11.2552 7.3572 0.0167 22 7 10.5025 7.8222 -0.9577 23 14 12.2175 8.5376 1.0983 24 1 13.5114 8.8636 0.4464 25 1 11.4330 9.7836 1.2915 26 1 12.4733 7.9043 2.4169 27 6 10.8601 3.6552 -0.5834 28 6 9.7047 3.0897 -1.4289 29 1 9.9402 2.1270 -1.8824 30 6 8.4171 3.0814 -0.5810 31 6 3.4311 1.2849 -0.0001 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2127 2.3203 0.0014 36 1 1.3339 4.5114 0.0019 37 1 3.7921 4.6382 0.0005 38 1 5.7060 2.8082 2.1264 39 1 7.1255 3.4013 1.2313 40 1 5.6189 4.3496 1.2405 41 1 7.6161 3.7272 -3.5372 42 1 7.5537 5.2640 -2.6346 43 1 10.4761 6.1088 -2.4695 44 1 9.0362 6.0578 -1.4189 45 1 10.4472 8.7779 -1.1140 46 1 10.7717 3.3106 0.4469 47 1 11.8166 3.3410 -1.0013 48 1 8.5186 3.7625 0.2640 49 1 8.2128 2.0718 -0.2246 50 1 4.0207 0.3800 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049237045.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:23 Heat of formation + Delta-G solvation = -31.263310 kcal Electronic energy + Delta-G solvation = -30640.050838 eV Core-core repulsion = 26632.585769 eV Total energy + Delta-G solvation = -4007.465069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84024 -41.01358 -39.83905 -38.32912 -36.55857 -35.07028 -34.00933 -32.03067 -31.56171 -31.08453 -29.96873 -28.13644 -27.46527 -26.99509 -25.84438 -24.25920 -23.56261 -22.31381 -21.73453 -20.78991 -20.33702 -18.88034 -18.55271 -18.20624 -17.31130 -17.10992 -16.92896 -16.61736 -16.55487 -16.21100 -15.94083 -15.52581 -15.37941 -14.78988 -14.64951 -14.42785 -14.33244 -14.25949 -13.80216 -13.60738 -13.49317 -13.40459 -13.23488 -13.15615 -12.97560 -12.82253 -12.71262 -12.66500 -12.35982 -12.27752 -11.95868 -11.91378 -11.83743 -11.82766 -11.68948 -11.46958 -11.32178 -10.83370 -10.64786 -9.83363 -9.61699 -9.13311 -8.84137 -7.84582 -5.17974 0.30202 0.49760 1.46345 1.47642 1.56294 1.57879 1.99810 2.38394 2.50719 2.79865 3.32691 3.34241 3.52080 3.58441 3.75120 3.86039 3.90551 3.97642 4.08849 4.11805 4.19295 4.28997 4.32957 4.34229 4.38487 4.41364 4.54872 4.55399 4.59946 4.64648 4.71796 4.75330 4.81078 4.86977 4.87943 4.97055 5.05018 5.09358 5.13231 5.21083 5.29052 5.30149 5.44455 5.47427 5.51357 5.64269 5.66360 5.77048 5.79214 6.23427 6.46092 6.54104 7.11655 7.13199 7.83052 8.44649 9.25999 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019263 B = 0.002447 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.219879 B =11438.856594 C =11905.189146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.114 3.886 4 C -0.208 4.208 5 C -0.089 4.089 6 C -0.141 4.141 7 C -0.035 4.035 8 C -0.057 4.057 9 H 0.134 0.866 10 C -0.145 4.145 11 C 0.526 3.474 12 O -0.578 6.578 13 N -0.607 5.607 14 C 0.125 3.875 15 C -0.112 4.112 16 H 0.112 0.888 17 C 0.198 3.802 18 N -0.622 5.622 19 C -0.234 4.234 20 H 0.087 0.913 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.973 3.027 24 H -0.289 1.289 25 H -0.301 1.301 26 H -0.264 1.264 27 C 0.139 3.861 28 C -0.095 4.095 29 H 0.136 0.864 30 C 0.111 3.889 31 C -0.153 4.153 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.005 0.995 44 H 0.003 0.997 45 H 0.243 0.757 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.060 0.940 49 H 0.110 0.890 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -18.338 3.106 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.107 4.107 6 C -0.160 4.160 7 C -0.036 4.036 8 C -0.078 4.078 9 H 0.151 0.849 10 C -0.202 4.202 11 C 0.316 3.684 12 O -0.458 6.458 13 N -0.339 5.339 14 C 0.002 3.998 15 C -0.132 4.132 16 H 0.130 0.870 17 C 0.073 3.927 18 N -0.349 5.349 19 C -0.363 4.363 20 H 0.105 0.895 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.217 1.217 25 H -0.228 1.228 26 H -0.188 1.188 27 C 0.014 3.986 28 C -0.114 4.114 29 H 0.153 0.847 30 C -0.011 4.011 31 C -0.172 4.172 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.078 0.922 49 H 0.128 0.872 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.272 -18.124 2.755 24.513 hybrid contribution 0.346 1.913 0.119 1.948 sum -15.926 -16.212 2.874 22.907 Atomic orbital electron populations 1.23338 0.76514 1.05584 1.02174 1.86035 1.23409 1.26520 1.88813 1.19054 0.92333 0.84799 0.96940 1.21459 1.01127 0.91747 1.08308 1.21139 0.94048 0.98218 0.97274 1.20915 0.94579 0.97827 1.02637 1.19170 0.93749 0.92765 0.97879 1.20245 0.92479 1.02123 0.92926 0.84858 1.21945 1.02610 0.99850 0.95844 1.20691 0.80270 0.79746 0.87672 1.90681 1.53046 1.52899 1.49125 1.48306 1.05530 1.55698 1.24387 1.21652 0.92897 0.95951 0.89277 1.22983 0.93581 0.96490 1.00158 0.86993 1.20743 0.92364 0.91569 0.88012 1.44503 1.57556 1.01660 1.31134 1.19447 1.26411 0.87400 1.03058 0.89474 1.25640 1.01385 0.98729 1.00361 1.70214 1.43007 1.11908 1.34920 0.85135 0.77748 0.78293 0.78666 1.21651 1.22823 1.18818 1.21407 0.95822 0.83134 0.98281 1.23043 0.94120 0.99189 0.95051 0.84651 1.22351 0.85089 1.00896 0.92800 1.20392 0.92067 0.97863 1.06873 0.91592 0.92074 0.86192 0.83133 0.84155 0.87849 0.88966 0.90523 0.93724 0.90730 0.94415 0.97713 0.97847 0.94724 0.92995 0.95241 0.92181 0.87158 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.63 10.50 -92.49 -0.97 -7.60 16 3 C 0.11 2.57 6.69 22.50 0.15 2.72 16 4 C -0.21 -4.29 9.04 22.36 0.20 -4.08 16 5 C -0.09 -2.07 10.04 22.25 0.22 -1.84 16 6 C -0.14 -3.93 7.93 22.28 0.18 -3.75 16 7 C -0.04 -0.91 4.40 -19.88 -0.09 -1.00 16 8 C -0.06 -1.38 2.29 -12.29 -0.03 -1.41 16 9 H 0.13 2.40 7.61 -2.38 -0.02 2.38 16 10 C -0.15 -3.33 8.82 71.98 0.64 -2.69 16 11 C 0.53 17.06 7.07 87.66 0.62 17.68 16 12 O -0.58 -23.15 15.41 -3.04 -0.05 -23.20 16 13 N -0.61 -19.15 3.31 -816.99 -2.70 -21.85 16 14 C 0.13 4.32 6.23 86.59 0.54 4.86 16 15 C -0.11 -3.85 4.02 -9.49 -0.04 -3.89 16 16 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 17 C 0.20 9.52 4.76 86.59 0.41 9.93 16 18 N -0.62 -29.99 3.37 -697.84 -2.35 -32.34 16 19 C -0.23 -12.60 10.24 84.03 0.86 -11.74 16 20 H 0.09 4.42 7.84 -2.91 -0.02 4.40 16 21 C -0.07 -3.85 5.48 84.86 0.46 -3.38 16 22 N -0.95 -57.59 10.30 21.65 0.22 -57.37 16 23 Si 0.97 45.51 29.56 68.60 2.03 47.54 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.14 4.87 6.37 86.65 0.55 5.42 16 28 C -0.09 -2.63 4.19 -9.25 -0.04 -2.67 16 29 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 30 C 0.11 2.97 4.47 86.72 0.39 3.35 16 31 C -0.15 -3.62 9.61 22.37 0.21 -3.40 16 32 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 33 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 34 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.15 2.18 6.30 -2.91 -0.02 2.16 16 36 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.10 3.18 7.51 -2.91 -0.02 3.16 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.78 4.84 -2.39 -0.01 1.77 16 40 H 0.04 1.19 7.39 -2.38 -0.02 1.17 16 41 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.04 1.55 7.44 -2.39 -0.02 1.53 16 43 H 0.00 0.26 7.32 -2.39 -0.02 0.24 16 44 H 0.00 0.19 6.67 -2.39 -0.02 0.17 16 45 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 46 H 0.05 1.70 7.95 -2.39 -0.02 1.68 16 47 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 48 H 0.06 1.94 6.23 -2.38 -0.01 1.92 16 49 H 0.11 2.03 7.61 -2.39 -0.02 2.01 16 50 H 0.14 2.81 7.94 -2.91 -0.02 2.78 16 Total: -1.00 -75.47 388.39 3.47 -71.99 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.94 Total: 17.40 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 6.36 Total: 5.43 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.83 Total: -111.56 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.02 Total: -30.80 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -75.47 3.47 -71.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049237045.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.729 kcal (2) G-P(sol) polarization free energy of solvation -75.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds