Wall clock time and date at job start Wed Apr 1 2020 02:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.53646 * 2 1 4 4 C 1.55137 * 110.52168 * 237.22411 * 2 1 3 5 5 C 1.54997 * 102.09165 * 220.39575 * 4 2 1 6 6 O 1.44386 * 103.49220 * 37.10308 * 5 4 2 7 7 C 1.43745 * 106.97489 * 319.94237 * 6 5 4 8 8 H 1.09000 * 109.87916 * 266.93722 * 7 6 5 9 9 C 1.50699 * 109.87673 * 145.93336 * 7 6 5 10 10 O 1.21286 * 120.00286 * 343.08532 * 9 7 6 11 11 N 1.34776 * 119.99755 * 163.09047 * 9 7 6 12 12 C 1.46502 * 120.00127 * 184.47418 * 11 9 7 13 13 C 1.52996 * 109.47431 * 177.52661 * 12 11 9 14 14 H 1.09001 * 109.76766 * 297.28100 * 13 12 11 15 15 C 1.52784 * 109.81664 * 176.51541 * 13 12 11 16 16 C 1.50597 * 110.85813 * 192.91332 * 15 13 12 17 17 C 1.38993 * 117.62301 * 200.03497 * 16 15 13 18 18 C 1.37910 * 120.58295 * 180.50063 * 17 16 15 19 19 C 1.38260 * 119.82642 * 0.06482 * 18 17 16 20 20 C 1.37963 * 119.71941 * 359.75428 * 19 18 17 21 21 C 1.37674 * 122.86592 * 20.14627 * 16 15 13 22 22 C 1.51219 * 122.35983 * 358.32397 * 21 16 15 23 23 N 1.46678 * 109.44995 * 11.93514 * 22 21 16 24 24 C 1.36935 * 121.33670 * 135.47407 * 23 22 21 25 25 H 1.07997 * 120.00338 * 216.37537 * 24 23 22 26 26 C 1.38817 * 120.00229 * 36.37814 * 24 23 22 27 27 N 1.31610 * 120.00082 * 186.69619 * 26 24 23 28 28 Si 1.86806 * 119.99611 * 6.69349 * 26 24 23 29 29 H 1.48500 * 109.46932 * 275.75228 * 28 26 24 30 30 H 1.48495 * 109.46719 * 155.75054 * 28 26 24 31 31 H 1.48495 * 109.46961 * 35.75120 * 28 26 24 32 32 H 1.09002 * 109.46749 * 289.90372 * 1 2 3 33 33 H 1.08995 * 109.47074 * 49.90781 * 1 2 3 34 34 H 1.08998 * 109.46814 * 169.91016 * 1 2 3 35 35 H 1.08997 * 110.83592 * 102.22832 * 4 2 1 36 36 H 1.09003 * 111.00694 * 338.63679 * 4 2 1 37 37 H 1.09002 * 110.61556 * 278.60975 * 5 4 2 38 38 H 1.08992 * 110.61864 * 155.60544 * 5 4 2 39 39 H 0.96996 * 120.00317 * 4.46320 * 11 9 7 40 40 H 1.08997 * 109.47429 * 57.51872 * 12 11 9 41 41 H 1.09004 * 109.46800 * 297.52876 * 12 11 9 42 42 H 1.08993 * 109.20233 * 313.26781 * 15 13 12 43 43 H 1.09003 * 109.20067 * 72.55790 * 15 13 12 44 44 H 1.07994 * 119.70227 * 0.49726 * 17 16 15 45 45 H 1.07997 * 120.08138 * 180.09071 * 18 17 16 46 46 H 1.08002 * 120.13824 * 179.77166 * 19 18 17 47 47 H 1.08001 * 119.74453 * 179.97438 * 20 19 18 48 48 H 1.09000 * 109.62639 * 251.89576 * 22 21 16 49 49 H 1.08997 * 109.47100 * 131.88502 * 22 21 16 50 50 H 0.97009 * 120.00048 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0739 -0.7865 -1.2216 5 6 3.2687 -1.5579 -0.6053 6 8 2.7978 -1.9109 0.7131 7 6 2.0695 -0.7781 1.2158 8 1 2.7331 -0.1401 1.7995 9 6 0.9229 -1.2462 2.0744 10 8 0.5452 -2.3968 2.0073 11 7 0.3170 -0.3861 2.9168 12 6 -0.7316 -0.8634 3.8219 13 6 -1.2062 0.2912 4.7064 14 1 -0.3823 0.6425 5.3276 15 6 -2.3593 -0.1759 5.5932 16 6 -3.0488 0.9973 6.2384 17 6 -3.8132 0.7514 7.3729 18 6 -4.4792 1.7793 8.0067 19 6 -4.3885 3.0666 7.5104 20 6 -3.6275 3.3143 6.3866 21 6 -2.9520 2.2813 5.7511 22 6 -2.1110 2.6271 4.5429 23 7 -1.7002 1.3933 3.8644 24 6 -1.7680 1.2733 2.5020 25 1 -2.0423 0.3287 2.0560 26 6 -1.4842 2.3658 1.6939 27 7 -1.6761 2.2904 0.3941 28 14 -0.8301 3.9430 2.4517 29 1 -1.9655 4.7630 2.9453 30 1 -0.0752 4.7083 1.4272 31 1 0.0704 3.6113 3.5849 32 1 -0.3633 0.3499 0.9663 33 1 -0.3633 0.6618 -0.7861 34 1 -0.3633 -1.0118 -0.1800 35 1 2.4119 -0.1051 -2.0023 36 1 1.3234 -1.4762 -1.6080 37 1 4.1473 -0.9160 -0.5399 38 1 3.4885 -2.4532 -1.1868 39 1 0.5752 0.5488 2.9241 40 1 -0.3348 -1.6620 4.4487 41 1 -1.5704 -1.2425 3.2381 42 1 -3.0789 -0.7249 4.9860 43 1 -1.9703 -0.8345 6.3698 44 1 -3.8862 -0.2536 7.7615 45 1 -5.0697 1.5793 8.8885 46 1 -4.9110 3.8748 8.0005 47 1 -3.5567 4.3196 5.9983 48 1 -1.2259 3.1793 4.8588 49 1 -2.6952 3.2409 3.8573 50 1 -1.4781 3.0540 -0.1705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054053083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:10 Heat of formation + Delta-G solvation = -21.634289 kcal Electronic energy + Delta-G solvation = -32110.102037 eV Core-core repulsion = 28103.054513 eV Total energy + Delta-G solvation = -4007.047524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.14232 -39.55866 -37.96594 -36.62536 -33.84815 -33.38490 -32.65132 -31.88158 -30.67669 -29.88118 -29.16294 -26.38218 -25.74053 -25.07626 -23.25515 -22.54051 -21.79528 -21.27549 -20.72424 -19.55258 -19.00418 -17.01892 -16.59028 -16.50499 -16.04414 -15.80314 -15.36010 -15.08210 -14.77340 -14.61374 -14.29547 -14.17507 -14.01702 -13.76627 -13.32169 -13.04527 -12.92211 -12.68644 -12.54050 -12.47384 -12.23567 -11.92356 -11.78577 -11.60380 -11.48233 -11.23498 -11.14154 -11.02879 -10.77267 -10.62525 -10.52461 -10.37273 -10.36486 -10.13772 -9.90620 -9.73549 -9.58664 -8.89464 -8.64924 -8.47138 -8.22102 -8.15038 -7.01728 -6.09054 -3.60731 1.65825 1.70278 3.15505 3.25432 3.27747 3.32883 3.55168 4.05527 4.31937 4.44209 4.68059 4.85137 5.02120 5.09511 5.12416 5.14081 5.20460 5.25582 5.31934 5.34801 5.40466 5.56444 5.64610 5.66992 5.76678 5.81900 5.83649 5.86790 5.93276 5.99543 6.03793 6.13867 6.21284 6.23150 6.28156 6.32056 6.34503 6.40801 6.47316 6.71442 6.75141 6.80766 6.84428 7.03802 7.06246 7.12527 7.19564 7.33079 7.73650 7.82749 8.21386 8.27429 8.72756 8.93305 9.50063 9.92691 11.01610 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.003884 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.125604 B = 7207.691585 C = 8473.074287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.110 4.110 3 H 0.083 0.917 4 C -0.149 4.149 5 C 0.045 3.955 6 O -0.354 6.354 7 C 0.061 3.939 8 H 0.080 0.920 9 C 0.525 3.475 10 O -0.544 6.544 11 N -0.697 5.697 12 C 0.140 3.860 13 C 0.161 3.839 14 H 0.046 0.954 15 C -0.092 4.092 16 C -0.058 4.058 17 C -0.126 4.126 18 C -0.133 4.133 19 C -0.129 4.129 20 C -0.124 4.124 21 C -0.077 4.077 22 C 0.154 3.846 23 N -0.603 5.603 24 C -0.261 4.261 25 H 0.093 0.907 26 C 0.035 3.965 27 N -0.892 5.892 28 Si 0.880 3.120 29 H -0.286 1.286 30 H -0.303 1.303 31 H -0.269 1.269 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.409 0.591 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.043 0.957 49 H 0.084 0.916 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -0.186 6.559 7.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.129 4.129 3 H 0.102 0.898 4 C -0.187 4.187 5 C -0.032 4.032 6 O -0.272 6.272 7 C 0.000 4.000 8 H 0.098 0.902 9 C 0.310 3.690 10 O -0.422 6.422 11 N -0.350 5.350 12 C 0.016 3.984 13 C 0.055 3.945 14 H 0.064 0.936 15 C -0.131 4.131 16 C -0.058 4.058 17 C -0.144 4.144 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.078 4.078 22 C 0.029 3.971 23 N -0.328 5.328 24 C -0.389 4.389 25 H 0.110 0.890 26 C -0.166 4.166 27 N -0.534 5.534 28 Si 0.710 3.290 29 H -0.213 1.213 30 H -0.231 1.231 31 H -0.195 1.195 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.245 0.755 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.060 0.940 49 H 0.101 0.899 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.409 -1.149 6.418 7.357 hybrid contribution 0.219 1.887 0.217 1.912 sum 3.628 0.738 6.635 7.598 Atomic orbital electron populations 1.22454 0.89865 1.00823 1.08925 1.22577 1.00385 0.98420 0.91528 0.89843 1.23316 0.97957 0.99341 0.98093 1.23571 0.96155 0.99569 0.83892 1.88922 1.70667 1.36542 1.31020 1.22782 0.92703 0.88257 0.96300 0.90180 1.20032 0.83486 0.85727 0.79761 1.90639 1.65433 1.18986 1.67107 1.45765 1.38062 1.12523 1.38631 1.21178 0.90898 0.94992 0.91300 1.20763 0.93459 0.88835 0.91470 0.93616 1.20877 0.98576 0.95077 0.98601 1.19473 0.97458 0.94260 0.94610 1.21161 0.98214 0.98812 0.96199 1.20916 1.00693 0.93246 1.00215 1.20955 0.99983 0.96733 0.97007 1.21109 0.98154 0.98847 0.96161 1.20527 0.97359 0.92701 0.97227 1.20573 0.95043 0.90579 0.90941 1.44343 1.73739 1.11394 1.03294 1.18821 1.41862 0.99792 0.78453 0.89011 1.25390 0.98426 0.97783 0.94991 1.69761 1.50037 1.30592 1.02988 0.87107 0.79302 0.84574 0.77972 1.21334 1.23097 1.19468 0.85938 0.90803 0.94650 0.90484 0.90274 0.92430 0.89146 0.75452 0.92291 0.91147 0.90218 0.91363 0.86656 0.86786 0.86718 0.86618 0.94009 0.89858 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 7.06 37.16 0.26 -3.10 16 2 C -0.11 -1.87 3.66 -88.91 -0.33 -2.19 16 3 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.15 -2.16 6.71 -24.55 -0.16 -2.32 16 5 C 0.04 0.61 7.72 38.21 0.29 0.91 16 6 O -0.35 -6.33 10.79 -54.19 -0.58 -6.92 16 7 C 0.06 1.06 3.84 -27.31 -0.10 0.96 16 8 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 9 C 0.52 10.43 5.16 -10.99 -0.06 10.37 16 10 O -0.54 -12.64 16.61 -13.41 -0.22 -12.86 16 11 N -0.70 -12.93 3.21 -60.29 -0.19 -13.13 16 12 C 0.14 2.49 4.46 -4.04 -0.02 2.48 16 13 C 0.16 2.78 2.98 -67.64 -0.20 2.58 16 14 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 15 C -0.09 -1.43 5.21 -28.04 -0.15 -1.57 16 16 C -0.06 -0.94 5.76 -104.60 -0.60 -1.54 16 17 C -0.13 -1.78 9.59 -39.42 -0.38 -2.15 16 18 C -0.13 -1.75 10.04 -39.69 -0.40 -2.15 16 19 C -0.13 -1.76 10.05 -39.67 -0.40 -2.15 16 20 C -0.12 -1.94 9.62 -39.46 -0.38 -2.32 16 21 C -0.08 -1.35 5.83 -104.35 -0.61 -1.96 16 22 C 0.15 3.02 3.99 -4.84 -0.02 3.00 16 23 N -0.60 -12.18 2.57 -166.16 -0.43 -12.60 16 24 C -0.26 -6.01 5.95 -15.06 -0.09 -6.10 16 25 H 0.09 2.39 6.25 -52.49 -0.33 2.07 16 26 C 0.04 0.84 4.66 -17.43 -0.08 0.76 16 27 N -0.89 -22.69 11.47 55.49 0.64 -22.05 16 28 Si 0.88 19.32 24.20 -169.99 -4.11 15.21 16 29 H -0.29 -6.31 6.57 56.52 0.37 -5.94 16 30 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 31 H -0.27 -5.70 6.25 56.52 0.35 -5.35 16 32 H 0.12 2.68 1.98 -51.93 -0.10 2.58 16 33 H 0.07 1.61 7.18 -51.93 -0.37 1.24 16 34 H 0.03 0.76 7.73 -51.93 -0.40 0.36 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.22 7.74 -51.93 -0.40 0.82 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.41 7.60 7.34 -40.82 -0.30 7.30 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 1.40 7.21 -51.93 -0.37 1.03 16 42 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 43 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 44 H 0.12 1.37 8.05 -52.49 -0.42 0.95 16 45 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 46 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 47 H 0.12 1.67 8.05 -52.49 -0.42 1.25 16 48 H 0.04 0.83 6.01 -51.93 -0.31 0.52 16 49 H 0.08 1.78 5.45 -51.93 -0.28 1.50 16 50 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -28.02 371.67 -10.30 -38.32 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.58 Total: 14.98 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -3.42 Total: -6.53 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.02 Total: -47.78 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.81 Total: -19.78 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.11 Total: 15.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.02 -10.30 -38.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054053083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.681 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds