Wall clock time and date at job start Wed Apr 1 2020 02:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.53646 * 2 1 4 4 C 1.55137 * 110.52168 * 237.22411 * 2 1 3 5 5 C 1.54997 * 102.09165 * 220.39575 * 4 2 1 6 6 O 1.44386 * 103.49220 * 37.10308 * 5 4 2 7 7 C 1.43745 * 106.97489 * 319.94237 * 6 5 4 8 8 H 1.09000 * 109.87916 * 266.93722 * 7 6 5 9 9 C 1.50699 * 109.87673 * 145.93336 * 7 6 5 10 10 O 1.21286 * 120.00286 * 343.08532 * 9 7 6 11 11 N 1.34776 * 119.99755 * 163.09047 * 9 7 6 12 12 C 1.46502 * 120.00127 * 184.47418 * 11 9 7 13 13 C 1.52996 * 109.47431 * 177.52661 * 12 11 9 14 14 H 1.09001 * 109.76766 * 297.28100 * 13 12 11 15 15 C 1.52784 * 109.81664 * 176.51541 * 13 12 11 16 16 C 1.50597 * 110.85813 * 192.91332 * 15 13 12 17 17 C 1.38993 * 117.62301 * 200.03497 * 16 15 13 18 18 C 1.37910 * 120.58295 * 180.50063 * 17 16 15 19 19 C 1.38260 * 119.82642 * 0.06482 * 18 17 16 20 20 C 1.37963 * 119.71941 * 359.75428 * 19 18 17 21 21 C 1.37674 * 122.86592 * 20.14627 * 16 15 13 22 22 C 1.51219 * 122.35983 * 358.32397 * 21 16 15 23 23 N 1.46678 * 109.44995 * 11.93514 * 22 21 16 24 24 C 1.36935 * 121.33670 * 135.47407 * 23 22 21 25 25 H 1.07997 * 120.00338 * 216.37537 * 24 23 22 26 26 C 1.38817 * 120.00229 * 36.37814 * 24 23 22 27 27 N 1.31610 * 120.00082 * 186.69619 * 26 24 23 28 28 Si 1.86806 * 119.99611 * 6.69349 * 26 24 23 29 29 H 1.48500 * 109.46932 * 275.75228 * 28 26 24 30 30 H 1.48495 * 109.46719 * 155.75054 * 28 26 24 31 31 H 1.48495 * 109.46961 * 35.75120 * 28 26 24 32 32 H 1.09002 * 109.46749 * 289.90372 * 1 2 3 33 33 H 1.08995 * 109.47074 * 49.90781 * 1 2 3 34 34 H 1.08998 * 109.46814 * 169.91016 * 1 2 3 35 35 H 1.08997 * 110.83592 * 102.22832 * 4 2 1 36 36 H 1.09003 * 111.00694 * 338.63679 * 4 2 1 37 37 H 1.09002 * 110.61556 * 278.60975 * 5 4 2 38 38 H 1.08992 * 110.61864 * 155.60544 * 5 4 2 39 39 H 0.96996 * 120.00317 * 4.46320 * 11 9 7 40 40 H 1.08997 * 109.47429 * 57.51872 * 12 11 9 41 41 H 1.09004 * 109.46800 * 297.52876 * 12 11 9 42 42 H 1.08993 * 109.20233 * 313.26781 * 15 13 12 43 43 H 1.09003 * 109.20067 * 72.55790 * 15 13 12 44 44 H 1.07994 * 119.70227 * 0.49726 * 17 16 15 45 45 H 1.07997 * 120.08138 * 180.09071 * 18 17 16 46 46 H 1.08002 * 120.13824 * 179.77166 * 19 18 17 47 47 H 1.08001 * 119.74453 * 179.97438 * 20 19 18 48 48 H 1.09000 * 109.62639 * 251.89576 * 22 21 16 49 49 H 1.08997 * 109.47100 * 131.88502 * 22 21 16 50 50 H 0.97009 * 120.00048 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0739 -0.7865 -1.2216 5 6 3.2687 -1.5579 -0.6053 6 8 2.7978 -1.9109 0.7131 7 6 2.0695 -0.7781 1.2158 8 1 2.7331 -0.1401 1.7995 9 6 0.9229 -1.2462 2.0744 10 8 0.5452 -2.3968 2.0073 11 7 0.3170 -0.3861 2.9168 12 6 -0.7316 -0.8634 3.8219 13 6 -1.2062 0.2912 4.7064 14 1 -0.3823 0.6425 5.3276 15 6 -2.3593 -0.1759 5.5932 16 6 -3.0488 0.9973 6.2384 17 6 -3.8132 0.7514 7.3729 18 6 -4.4792 1.7793 8.0067 19 6 -4.3885 3.0666 7.5104 20 6 -3.6275 3.3143 6.3866 21 6 -2.9520 2.2813 5.7511 22 6 -2.1110 2.6271 4.5429 23 7 -1.7002 1.3933 3.8644 24 6 -1.7680 1.2733 2.5020 25 1 -2.0423 0.3287 2.0560 26 6 -1.4842 2.3658 1.6939 27 7 -1.6761 2.2904 0.3941 28 14 -0.8301 3.9430 2.4517 29 1 -1.9655 4.7630 2.9453 30 1 -0.0752 4.7083 1.4272 31 1 0.0704 3.6113 3.5849 32 1 -0.3633 0.3499 0.9663 33 1 -0.3633 0.6618 -0.7861 34 1 -0.3633 -1.0118 -0.1800 35 1 2.4119 -0.1051 -2.0023 36 1 1.3234 -1.4762 -1.6080 37 1 4.1473 -0.9160 -0.5399 38 1 3.4885 -2.4532 -1.1868 39 1 0.5752 0.5488 2.9241 40 1 -0.3348 -1.6620 4.4487 41 1 -1.5704 -1.2425 3.2381 42 1 -3.0789 -0.7249 4.9860 43 1 -1.9703 -0.8345 6.3698 44 1 -3.8862 -0.2536 7.7615 45 1 -5.0697 1.5793 8.8885 46 1 -4.9110 3.8748 8.0005 47 1 -3.5567 4.3196 5.9983 48 1 -1.2259 3.1793 4.8588 49 1 -2.6952 3.2409 3.8573 50 1 -1.4781 3.0540 -0.1705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054053083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:09 Heat of formation + Delta-G solvation = -37.289346 kcal Electronic energy + Delta-G solvation = -32110.780891 eV Core-core repulsion = 28103.054513 eV Total energy + Delta-G solvation = -4007.726378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58417 -40.81890 -39.36744 -38.08853 -35.40600 -34.92761 -34.05341 -33.38411 -32.03694 -31.23688 -30.43767 -27.86759 -27.29916 -26.46897 -24.83586 -23.79268 -22.97525 -22.58216 -22.16378 -21.00388 -20.51426 -18.54485 -18.05953 -17.89559 -17.38755 -17.28389 -16.72797 -16.62821 -16.13851 -15.91879 -15.65209 -15.50509 -15.39488 -15.29741 -14.68343 -14.51284 -14.22773 -14.13837 -14.00299 -13.89148 -13.72229 -13.33654 -13.23765 -13.13473 -12.82603 -12.75784 -12.44081 -12.31795 -12.22241 -12.14240 -12.02506 -11.81050 -11.76255 -11.60931 -11.44993 -11.38015 -10.97904 -10.46603 -10.38757 -9.79368 -9.61542 -9.37026 -8.70721 -7.97698 -5.46933 0.53077 0.54623 1.37681 1.46733 1.53324 1.70703 2.12938 2.48243 2.91080 3.09658 3.18040 3.30304 3.53356 3.78111 3.81292 3.83592 3.96352 4.09474 4.13280 4.18370 4.26884 4.34290 4.35773 4.38729 4.41487 4.54444 4.55729 4.60637 4.68021 4.75233 4.81108 4.85573 4.86239 4.87736 4.91874 4.93724 5.08844 5.18916 5.21047 5.25686 5.37943 5.38775 5.63499 5.64745 5.66739 5.82884 5.83515 5.99677 6.05882 6.21020 6.32720 6.72137 6.95307 7.37393 7.66845 8.13982 9.14946 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.003884 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.125604 B = 7207.691585 C = 8473.074287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 H 0.100 0.900 4 C -0.146 4.146 5 C 0.044 3.956 6 O -0.380 6.380 7 C 0.063 3.937 8 H 0.110 0.890 9 C 0.518 3.482 10 O -0.585 6.585 11 N -0.691 5.691 12 C 0.144 3.856 13 C 0.164 3.836 14 H 0.061 0.939 15 C -0.086 4.086 16 C -0.075 4.075 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.138 4.138 21 C -0.106 4.106 22 C 0.157 3.843 23 N -0.613 5.613 24 C -0.235 4.235 25 H 0.054 0.946 26 C -0.001 4.001 27 N -0.925 5.925 28 Si 0.927 3.073 29 H -0.290 1.290 30 H -0.314 1.314 31 H -0.254 1.254 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.007 0.993 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.410 0.590 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.141 0.859 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.119 0.881 48 H 0.042 0.958 49 H 0.058 0.942 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 0.377 9.190 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.129 4.129 3 H 0.118 0.882 4 C -0.183 4.183 5 C -0.032 4.032 6 O -0.299 6.299 7 C 0.002 3.998 8 H 0.128 0.872 9 C 0.305 3.695 10 O -0.466 6.466 11 N -0.342 5.342 12 C 0.020 3.980 13 C 0.058 3.942 14 H 0.079 0.921 15 C -0.125 4.125 16 C -0.075 4.075 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.107 4.107 22 C 0.033 3.967 23 N -0.338 5.338 24 C -0.365 4.365 25 H 0.072 0.928 26 C -0.198 4.198 27 N -0.568 5.568 28 Si 0.757 3.243 29 H -0.217 1.217 30 H -0.243 1.243 31 H -0.178 1.178 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.246 0.754 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.158 0.842 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.137 0.863 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.360 -0.577 9.094 10.102 hybrid contribution -0.215 1.661 -0.539 1.759 sum 4.145 1.084 8.554 9.567 Atomic orbital electron populations 1.22248 0.92979 0.98301 1.07389 1.22561 0.97499 0.99790 0.93015 0.88215 1.23301 0.97978 0.99341 0.97713 1.23849 0.96347 1.00926 0.82050 1.88897 1.70770 1.37153 1.33044 1.22827 0.92258 0.88518 0.96170 0.87229 1.20614 0.83959 0.85221 0.79685 1.90606 1.66868 1.20731 1.68412 1.45774 1.37714 1.12365 1.38374 1.21176 0.89907 0.95833 0.91077 1.20887 0.94649 0.87495 0.91125 0.92110 1.20819 0.97456 0.95436 0.98829 1.19612 0.98515 0.93684 0.95733 1.21451 0.97327 1.00492 0.95188 1.21364 0.99747 0.92592 1.00690 1.21318 0.98982 0.98093 0.96004 1.21264 0.98602 0.98660 0.97085 1.20404 0.98919 0.94168 0.97247 1.20409 0.95129 0.89737 0.91450 1.44397 1.74328 1.12523 1.02543 1.18432 1.40149 0.98004 0.79899 0.92848 1.25735 0.99232 0.99816 0.95062 1.69897 1.51915 1.30957 1.04054 0.86343 0.78734 0.81854 0.77345 1.21739 1.24305 1.17820 0.87267 0.92661 0.97390 0.87652 0.92058 0.89342 0.87353 0.75357 0.90396 0.94189 0.91585 0.88206 0.84163 0.83379 0.83813 0.86279 0.94077 0.92375 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.57 7.06 71.98 0.51 -6.07 16 2 C -0.11 -3.69 3.66 -9.69 -0.04 -3.73 16 3 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 4 C -0.15 -4.05 6.71 32.01 0.21 -3.83 16 5 C 0.04 1.10 7.72 72.67 0.56 1.66 16 6 O -0.38 -13.19 10.79 -130.85 -1.41 -14.60 16 7 C 0.06 2.17 3.84 30.22 0.12 2.28 16 8 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 9 C 0.52 21.04 5.16 87.66 0.45 21.49 16 10 O -0.59 -28.19 16.61 15.08 0.25 -27.94 16 11 N -0.69 -26.14 3.21 -463.06 -1.49 -27.62 16 12 C 0.14 5.23 4.46 86.38 0.39 5.61 16 13 C 0.16 5.59 2.98 44.78 0.13 5.73 16 14 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 15 C -0.09 -2.57 5.21 29.74 0.16 -2.42 16 16 C -0.08 -2.32 5.76 -19.85 -0.11 -2.43 16 17 C -0.13 -3.15 9.59 22.37 0.21 -2.93 16 18 C -0.13 -2.79 10.04 22.20 0.22 -2.57 16 19 C -0.13 -3.01 10.05 22.21 0.22 -2.79 16 20 C -0.14 -4.09 9.62 22.35 0.22 -3.88 16 21 C -0.11 -3.63 5.83 -19.69 -0.11 -3.75 16 22 C 0.16 6.20 3.99 85.76 0.34 6.54 16 23 N -0.61 -25.11 2.57 -679.61 -1.75 -26.86 16 24 C -0.24 -11.31 5.95 84.03 0.50 -10.81 16 25 H 0.05 2.99 6.25 -2.91 -0.02 2.97 16 26 C 0.00 -0.03 4.66 84.86 0.40 0.36 16 27 N -0.92 -49.17 11.47 21.65 0.25 -48.92 16 28 Si 0.93 40.55 24.20 68.60 1.66 42.21 16 29 H -0.29 -12.77 6.57 99.48 0.65 -12.11 16 30 H -0.31 -14.24 7.11 99.48 0.71 -13.53 16 31 H -0.25 -10.33 6.25 99.48 0.62 -9.71 16 32 H 0.11 5.03 1.98 -2.39 0.00 5.02 16 33 H 0.05 2.54 7.18 -2.39 -0.02 2.53 16 34 H 0.01 0.33 7.73 -2.39 -0.02 0.31 16 35 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 1.91 7.74 -2.39 -0.02 1.89 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.41 15.32 7.34 -92.71 -0.68 14.64 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.04 1.69 7.21 -2.38 -0.02 1.68 16 42 H 0.07 2.14 8.05 -2.39 -0.02 2.12 16 43 H 0.10 2.32 8.10 -2.39 -0.02 2.30 16 44 H 0.14 2.74 8.05 -2.91 -0.02 2.71 16 45 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 46 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 47 H 0.12 3.33 8.05 -2.91 -0.02 3.30 16 48 H 0.04 1.61 6.01 -2.39 -0.01 1.60 16 49 H 0.06 2.54 5.45 -2.39 -0.01 2.53 16 50 H 0.26 13.48 8.31 -92.70 -0.77 12.71 16 Total: -1.00 -64.76 371.67 2.03 -62.73 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: 0.14 Total: 42.54 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 4.37 Total: -1.54 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -2.98 Total: -103.40 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -1.16 Total: -42.54 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.66 Total: 42.21 kcal Total: -64.76 2.03 -62.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054053083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.442 kcal (2) G-P(sol) polarization free energy of solvation -64.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds