Wall clock time and date at job start Wed Apr 1 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.48089 * 2 1 4 4 O 1.42902 * 109.47734 * 120.01994 * 2 1 3 5 5 C 1.42905 * 114.09583 * 181.14573 * 4 2 1 6 6 C 1.53096 * 109.41382 * 298.83698 * 5 4 2 7 7 C 1.53181 * 109.16280 * 57.60845 * 6 5 4 8 8 C 1.53090 * 109.48304 * 239.95940 * 2 1 3 9 9 H 1.08998 * 109.52249 * 62.43969 * 8 2 1 10 10 C 1.50702 * 109.52497 * 302.31839 * 8 2 1 11 11 O 1.21284 * 120.00028 * 359.97438 * 10 8 2 12 12 N 1.34772 * 120.00300 * 180.02562 * 10 8 2 13 13 C 1.46504 * 120.00000 * 179.97438 * 12 10 8 14 14 C 1.50705 * 109.46759 * 179.97438 * 13 12 10 15 15 C 1.38251 * 120.01664 * 90.00334 * 14 13 12 16 16 C 1.38144 * 119.95622 * 180.02562 * 15 14 13 17 17 C 1.38448 * 120.10829 * 359.97438 * 16 15 14 18 18 C 1.38058 * 119.93283 * 0.02562 * 17 16 15 19 19 C 1.38144 * 120.01709 * 269.72363 * 14 13 12 20 20 C 1.50782 * 108.86317 * 180.02562 * 18 17 16 21 21 N 1.46636 * 107.69644 * 0.02562 * 20 18 17 22 22 C 1.36942 * 126.55985 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99637 * 0.02562 * 22 21 20 24 24 C 1.38803 * 119.99996 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00251 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99979 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47494 * 90.00546 * 26 24 22 28 28 H 1.48504 * 109.47153 * 210.00228 * 26 24 22 29 29 H 1.48499 * 109.47261 * 330.00199 * 26 24 22 30 30 C 1.46632 * 106.87842 * 0.02562 * 21 20 18 31 31 H 1.08997 * 109.47579 * 299.98221 * 1 2 3 32 32 H 1.09002 * 109.47002 * 59.98634 * 1 2 3 33 33 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.48276 * 178.85928 * 5 4 2 35 35 H 1.09001 * 109.49146 * 58.82628 * 5 4 2 36 36 H 1.08998 * 109.52300 * 177.51797 * 6 5 4 37 37 H 1.09004 * 109.51858 * 297.70524 * 6 5 4 38 38 H 1.09005 * 109.54183 * 62.88808 * 7 6 5 39 39 H 1.08991 * 109.54342 * 183.15360 * 7 6 5 40 40 H 0.97004 * 119.99619 * 359.97438 * 12 10 8 41 41 H 1.08997 * 109.47109 * 299.99616 * 13 12 10 42 42 H 1.08993 * 109.46931 * 59.99852 * 13 12 10 43 43 H 1.07998 * 120.02207 * 359.97247 * 15 14 13 44 44 H 1.08007 * 119.94827 * 179.97438 * 16 15 14 45 45 H 1.07998 * 119.94882 * 0.02562 * 19 14 13 46 46 H 1.09003 * 109.80928 * 119.54936 * 20 18 17 47 47 H 1.08995 * 109.81269 * 240.38509 * 20 18 17 48 48 H 0.97003 * 120.00246 * 179.97438 * 25 24 22 49 49 H 1.09006 * 109.80797 * 240.45404 * 30 21 20 50 50 H 1.08990 * 109.81251 * 119.54273 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0065 -0.6740 1.1665 5 6 3.4307 -0.7091 1.2793 6 6 4.0177 -1.4601 0.0812 7 6 3.5711 -0.7711 -1.2120 8 6 2.0406 -0.7225 -1.2494 9 1 1.7140 -0.1854 -2.1398 10 6 1.4927 -2.1261 -1.2788 11 8 0.7655 -2.5120 -0.3881 12 7 1.8116 -2.9529 -2.2942 13 6 1.2794 -4.3176 -2.3224 14 6 1.7827 -5.0276 -3.5527 15 6 2.9676 -5.7382 -3.5051 16 6 3.4280 -6.3882 -4.6338 17 6 2.7045 -6.3296 -5.8127 18 6 1.5212 -5.6199 -5.8602 19 6 1.0573 -4.9735 -4.7272 20 6 0.9468 -5.7225 -7.2506 21 7 1.8601 -6.5446 -8.0507 22 6 1.7094 -6.8841 -9.3688 23 1 0.8486 -6.5367 -9.9208 24 6 2.6635 -7.6738 -9.9955 25 7 3.7128 -8.0967 -9.3228 26 14 2.4583 -8.1363 -11.7936 27 1 3.1086 -7.1091 -12.6463 28 1 3.0909 -9.4570 -12.0403 29 1 1.0124 -8.2106 -12.1238 30 6 2.9649 -6.9346 -7.1690 31 1 -0.3634 0.5135 0.8901 32 1 -0.3633 0.5141 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.7099 -1.2199 2.2007 35 1 3.8193 0.3092 1.2959 36 1 5.1059 -1.4498 0.1425 37 1 3.6613 -2.4902 0.0870 38 1 3.9690 0.2433 -1.2408 39 1 3.9392 -1.3331 -2.0703 40 1 2.3935 -2.6444 -3.0063 41 1 1.6084 -4.8543 -1.4326 42 1 0.1902 -4.2824 -2.3436 43 1 3.5333 -5.7845 -2.5863 44 1 4.3540 -6.9430 -4.5965 45 1 0.1296 -4.4217 -4.7630 46 1 -0.0353 -6.1938 -7.2107 47 1 0.8617 -4.7284 -7.6894 48 1 4.3794 -8.6489 -9.7607 49 1 3.9064 -6.5559 -7.5669 50 1 3.0072 -8.0207 -7.0881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054262320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:24 Heat of formation + Delta-G solvation = -30.802100 kcal Electronic energy + Delta-G solvation = -29902.535095 eV Core-core repulsion = 25895.090025 eV Total energy + Delta-G solvation = -4007.445070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.91661 -39.71222 -38.38416 -36.36362 -34.69022 -33.96404 -32.88756 -32.25783 -31.17836 -29.80093 -28.40707 -27.31005 -26.04871 -25.12671 -24.30914 -22.54477 -22.11558 -21.86270 -20.46241 -20.25176 -19.63485 -17.28824 -17.05567 -16.65295 -16.18741 -16.06242 -15.65252 -15.38173 -14.89384 -14.84636 -14.62451 -14.33728 -14.28565 -13.98046 -13.90132 -13.30413 -13.06077 -13.03964 -12.82747 -12.63579 -12.47922 -12.22506 -11.96480 -11.93266 -11.83954 -11.69283 -11.57998 -11.36781 -11.11386 -11.02458 -10.87089 -10.70573 -10.51115 -10.25555 -10.17193 -9.85602 -9.83568 -9.55522 -9.11373 -8.98015 -8.45074 -8.05086 -6.89581 -5.85472 -3.18926 1.55083 1.71023 2.55199 3.12607 3.34626 3.39422 3.41670 3.57539 4.09814 4.24607 4.33672 4.37482 4.40202 4.57276 4.65983 4.77335 4.94293 4.97258 5.05169 5.07255 5.22143 5.25215 5.28468 5.29350 5.36313 5.39461 5.45194 5.48962 5.52766 5.54593 5.66110 5.71291 5.77211 5.82738 5.85651 5.98918 6.08106 6.15968 6.42010 6.46888 6.50327 6.51709 6.73450 6.76330 7.01741 7.05379 7.28785 7.30986 7.41869 7.48849 7.64968 8.09267 8.16563 9.07369 9.67239 10.34098 11.28643 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.001960 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.752798 B =14280.863666 C =14556.330435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 H 0.060 0.940 4 O -0.362 6.362 5 C 0.059 3.941 6 C -0.159 4.159 7 C -0.114 4.114 8 C -0.144 4.144 9 H 0.105 0.895 10 C 0.520 3.480 11 O -0.521 6.521 12 N -0.726 5.726 13 C 0.171 3.829 14 C -0.131 4.131 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.081 4.081 18 C -0.106 4.106 19 C -0.084 4.084 20 C 0.175 3.825 21 N -0.601 5.601 22 C -0.226 4.226 23 H 0.084 0.916 24 C -0.007 4.007 25 N -0.923 5.923 26 Si 0.918 3.082 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.205 3.795 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.400 0.600 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.037 0.963 47 H 0.036 0.964 48 H 0.255 0.745 49 H 0.064 0.936 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 15.926 18.869 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.078 0.922 4 O -0.280 6.280 5 C -0.018 4.018 6 C -0.197 4.197 7 C -0.152 4.152 8 C -0.166 4.166 9 H 0.123 0.877 10 C 0.306 3.694 11 O -0.396 6.396 12 N -0.378 5.378 13 C 0.048 3.952 14 C -0.132 4.132 15 C -0.122 4.122 16 C -0.131 4.131 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.103 4.103 20 C 0.050 3.950 21 N -0.327 5.327 22 C -0.354 4.354 23 H 0.102 0.898 24 C -0.204 4.204 25 N -0.570 5.570 26 Si 0.748 3.252 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.081 3.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.267 15.410 19.470 24.831 hybrid contribution 0.610 -0.064 -1.612 1.724 sum 0.343 15.346 17.858 23.548 Atomic orbital electron populations 1.22105 0.92651 1.05784 1.01538 1.21802 0.95807 0.93470 0.83635 0.92184 1.88076 1.20027 1.77825 1.42076 1.22554 0.81823 0.99132 0.98291 1.22222 1.01304 1.00934 0.95255 1.21603 0.92784 1.02025 0.98781 1.22122 0.97478 0.95077 1.01888 0.87728 1.20298 0.80749 0.86860 0.81466 1.90647 1.36318 1.76258 1.36421 1.46214 1.51948 1.13569 1.26090 1.20070 0.98503 0.81113 0.95470 1.19476 0.96906 1.02242 0.94525 1.20811 0.95670 0.97829 0.97919 1.20501 1.00194 1.00734 0.91639 1.21546 0.94230 0.95428 0.97013 1.20726 0.96577 0.97626 0.95771 1.20303 0.99429 0.99431 0.91151 1.19705 0.93804 0.95232 0.86283 1.43961 1.22204 1.58723 1.07845 1.18979 1.06207 1.26638 0.83562 0.89841 1.24842 0.96867 0.99904 0.98762 1.69921 1.12089 1.39648 1.35356 0.86019 0.77567 0.77672 0.83909 1.21434 1.21536 1.20524 1.19740 0.92370 0.97924 0.81859 0.92218 0.91907 0.88423 0.88955 0.93400 0.90503 0.90893 0.90597 0.90691 0.76521 0.90989 0.90962 0.86407 0.86147 0.86576 0.94589 0.94623 0.93445 0.91809 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.21 37.16 0.34 -1.22 16 2 C 0.11 1.01 2.84 -26.68 -0.08 0.94 16 3 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 4 O -0.36 -4.04 9.46 -51.94 -0.49 -4.53 16 5 C 0.06 0.48 6.84 37.21 0.25 0.73 16 6 C -0.16 -1.21 5.88 -26.59 -0.16 -1.36 16 7 C -0.11 -0.77 5.46 -26.55 -0.14 -0.91 16 8 C -0.14 -1.18 2.60 -91.63 -0.24 -1.42 16 9 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 10 C 0.52 5.73 5.63 -10.99 -0.06 5.67 16 11 O -0.52 -7.55 12.90 -11.15 -0.14 -7.69 16 12 N -0.73 -7.36 5.43 -61.47 -0.33 -7.70 16 13 C 0.17 1.97 5.80 -5.19 -0.03 1.94 16 14 C -0.13 -1.72 5.25 -104.65 -0.55 -2.27 16 15 C -0.10 -1.40 9.70 -39.61 -0.38 -1.79 16 16 C -0.11 -1.81 10.05 -39.54 -0.40 -2.21 16 17 C -0.08 -1.59 6.22 -104.57 -0.65 -2.24 16 18 C -0.11 -1.98 6.22 -104.57 -0.65 -2.63 16 19 C -0.08 -1.26 9.70 -39.54 -0.38 -1.64 16 20 C 0.18 3.70 7.25 -5.08 -0.04 3.66 16 21 N -0.60 -15.38 3.41 -175.67 -0.60 -15.98 16 22 C -0.23 -6.20 10.32 -15.06 -0.16 -6.36 16 23 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 25 N -0.92 -26.43 10.44 55.49 0.58 -25.85 16 26 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 C 0.21 4.97 5.39 -5.08 -0.03 4.94 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 1.20 5.32 -51.93 -0.28 0.92 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.71 7.39 -51.93 -0.38 0.32 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 40 H 0.40 3.53 7.87 -40.82 -0.32 3.21 16 41 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 42 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.06 1.68 7.49 -51.93 -0.39 1.30 16 50 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -31.86 393.33 -11.55 -43.42 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.03 Total: 2.32 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.44 Total: -6.46 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.35 Total: -49.53 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.64 Total: -12.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.86 -11.55 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054262320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.615 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds