Wall clock time and date at job start Wed Apr 1 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.57607 * 2 1 4 4 C 1.53093 * 109.51884 * 239.84290 * 2 1 3 5 5 O 1.42902 * 109.41910 * 297.70525 * 4 2 1 6 6 C 1.42910 * 114.09650 * 298.84413 * 5 4 2 7 7 C 1.53095 * 109.41337 * 61.15575 * 6 5 4 8 8 C 1.53174 * 109.16381 * 302.39093 * 7 6 5 9 9 H 1.09002 * 109.54391 * 297.11467 * 8 7 6 10 10 C 1.50703 * 109.61531 * 176.89028 * 8 7 6 11 11 O 1.21282 * 119.99965 * 240.22238 * 10 8 7 12 12 N 1.34777 * 119.99765 * 60.22694 * 10 8 7 13 13 C 1.46504 * 119.99981 * 180.02562 * 12 10 8 14 14 C 1.50693 * 109.46990 * 179.97438 * 13 12 10 15 15 C 1.38255 * 120.02181 * 269.71925 * 14 13 12 16 16 C 1.38146 * 119.96389 * 179.79036 * 15 14 13 17 17 C 1.38439 * 120.10285 * 0.44693 * 16 15 14 18 18 C 1.38070 * 119.93593 * 359.80934 * 17 16 15 19 19 C 1.38149 * 120.01818 * 89.99932 * 14 13 12 20 20 C 1.50780 * 108.86399 * 179.97438 * 18 17 16 21 21 N 1.46635 * 107.69996 * 0.02562 * 20 18 17 22 22 C 1.36933 * 126.56099 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99936 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00071 * 179.97438 * 22 21 20 25 25 N 1.31617 * 119.99984 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00057 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47200 * 60.00116 * 26 24 22 28 28 H 1.48495 * 109.47282 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47191 * 300.00059 * 26 24 22 30 30 C 1.46632 * 106.87437 * 359.97438 * 21 20 18 31 31 H 1.08996 * 109.46718 * 299.84209 * 1 2 3 32 32 H 1.09002 * 109.46536 * 59.84035 * 1 2 3 33 33 H 1.08998 * 109.47254 * 179.83972 * 1 2 3 34 34 H 1.08997 * 109.47995 * 57.69301 * 4 2 1 35 35 H 1.09005 * 109.47481 * 177.71260 * 4 2 1 36 36 H 1.08998 * 109.47667 * 181.14022 * 6 5 4 37 37 H 1.08998 * 109.48171 * 301.16077 * 6 5 4 38 38 H 1.09004 * 109.52063 * 182.48362 * 7 6 5 39 39 H 1.08999 * 109.51965 * 62.30125 * 7 6 5 40 40 H 0.97003 * 120.00105 * 359.97438 * 12 10 8 41 41 H 1.08994 * 109.46711 * 299.99391 * 13 12 10 42 42 H 1.09000 * 109.47204 * 59.99438 * 13 12 10 43 43 H 1.08001 * 120.01652 * 0.02830 * 15 14 13 44 44 H 1.07999 * 119.94996 * 180.23148 * 16 15 14 45 45 H 1.07995 * 119.95156 * 359.97436 * 19 14 13 46 46 H 1.08997 * 109.80729 * 119.54898 * 20 18 17 47 47 H 1.08996 * 109.80970 * 240.45346 * 20 18 17 48 48 H 0.96996 * 119.99971 * 179.97438 * 25 24 22 49 49 H 1.09005 * 109.81126 * 119.55029 * 30 21 20 50 50 H 1.09006 * 109.81661 * 240.38651 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 1.6097 -2.0868 -1.2164 6 6 2.0970 -2.8278 -0.0958 7 6 1.5876 -2.1874 1.1981 8 6 2.0419 -0.7254 1.2483 9 1 3.1307 -0.6826 1.2741 10 6 1.4819 -0.0637 2.4810 11 8 0.7482 0.8961 2.3738 12 7 1.7965 -0.5384 3.7025 13 6 1.2517 0.1046 4.9009 14 6 1.7525 -0.6132 6.1277 15 6 1.0310 -1.6684 6.6545 16 6 1.4934 -2.3284 7.7766 17 6 2.6735 -1.9288 8.3801 18 6 3.3913 -0.8716 7.8572 19 6 2.9297 -0.2135 6.7300 20 6 4.6208 -0.6519 8.7019 21 7 4.6064 -1.6482 9.7778 22 6 5.5430 -1.7953 10.7658 23 1 6.3985 -1.1370 10.8013 24 6 5.3930 -2.7906 11.7218 25 7 4.3502 -3.5925 11.6788 26 14 6.6710 -2.9917 13.0691 27 1 6.7534 -1.7402 13.8642 28 1 6.2816 -4.1167 13.9568 29 1 7.9938 -3.2779 12.4580 30 6 3.3965 -2.4558 9.5938 31 1 -0.3632 0.5114 0.8914 32 1 -0.3632 0.5163 -0.8886 33 1 -0.3634 -1.0276 -0.0029 34 1 1.6454 -0.2382 -2.1388 35 1 3.1308 -0.6891 -1.2678 36 1 1.7406 -3.8560 -0.1574 37 1 3.1869 -2.8200 -0.1009 38 1 1.9940 -2.7248 2.0550 39 1 0.4988 -2.2316 1.2223 40 1 2.3831 -1.3062 3.7882 41 1 1.5727 1.1457 4.9324 42 1 0.1630 0.0607 4.8737 43 1 0.1085 -1.9791 6.1867 44 1 0.9316 -3.1550 8.1857 45 1 3.4910 0.6135 6.3208 46 1 5.5154 -0.7798 8.0924 47 1 4.6025 0.3516 9.1269 48 1 4.2456 -4.2882 12.3466 49 1 3.6692 -3.4994 9.4369 50 1 2.7572 -2.3692 10.4726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054280164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:25 Heat of formation + Delta-G solvation = -32.835935 kcal Electronic energy + Delta-G solvation = -29599.746716 eV Core-core repulsion = 25592.213452 eV Total energy + Delta-G solvation = -4007.533263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.92492 -39.75790 -38.84058 -36.46359 -34.71400 -34.44403 -32.51052 -32.07948 -31.15581 -29.80545 -28.02779 -27.09905 -26.27868 -25.75288 -24.28951 -23.48687 -22.08570 -21.05121 -20.47743 -20.23361 -19.35829 -17.60378 -17.06813 -16.70734 -16.40464 -15.91001 -15.71504 -15.51038 -15.17884 -14.96229 -14.57999 -14.41802 -14.34718 -14.19532 -13.89917 -13.70831 -13.30880 -13.07019 -13.02237 -12.58685 -12.27719 -11.99223 -11.89821 -11.89080 -11.72666 -11.70448 -11.60006 -11.32188 -11.12241 -10.91961 -10.85953 -10.69241 -10.53888 -10.28765 -10.24226 -10.19364 -9.84168 -9.60572 -9.18643 -8.98874 -8.47565 -8.07164 -6.90777 -5.86191 -3.19708 1.51949 1.68744 2.41372 3.07046 3.34740 3.38673 3.40156 3.52010 4.06769 4.16176 4.33792 4.36698 4.38055 4.55728 4.66125 4.76919 4.82745 4.92467 5.04366 5.13086 5.19203 5.20198 5.26219 5.27537 5.34040 5.38583 5.42628 5.45707 5.50588 5.52566 5.61529 5.70310 5.80437 5.84861 5.96797 6.00610 6.05585 6.14050 6.39465 6.44522 6.48454 6.50236 6.71084 6.73346 6.81578 6.99831 7.27346 7.27836 7.33560 7.47278 7.63758 8.03728 8.08452 9.06500 9.66344 10.33178 11.27861 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.001903 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.621107 B =14713.133753 C =15043.187362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 H 0.084 0.916 4 C 0.064 3.936 5 O -0.379 6.379 6 C 0.062 3.938 7 C -0.150 4.150 8 C -0.106 4.106 9 H 0.097 0.903 10 C 0.518 3.482 11 O -0.535 6.535 12 N -0.722 5.722 13 C 0.170 3.830 14 C -0.132 4.132 15 C -0.103 4.103 16 C -0.112 4.112 17 C -0.080 4.080 18 C -0.106 4.106 19 C -0.084 4.084 20 C 0.175 3.825 21 N -0.601 5.601 22 C -0.228 4.228 23 H 0.083 0.917 24 C -0.007 4.007 25 N -0.923 5.923 26 Si 0.919 3.081 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.283 1.283 30 C 0.205 3.795 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.402 0.598 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.256 0.744 49 H 0.064 0.936 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 3.409 -23.112 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.124 4.124 3 H 0.103 0.897 4 C -0.013 4.013 5 O -0.298 6.298 6 C -0.015 4.015 7 C -0.188 4.188 8 C -0.128 4.128 9 H 0.115 0.885 10 C 0.305 3.695 11 O -0.413 6.413 12 N -0.374 5.374 13 C 0.047 3.953 14 C -0.133 4.133 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.103 4.103 20 C 0.050 3.950 21 N -0.327 5.327 22 C -0.355 4.355 23 H 0.101 0.899 24 C -0.203 4.203 25 N -0.570 5.570 26 Si 0.749 3.251 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.210 1.210 30 C 0.081 3.919 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.237 0.763 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.012 3.888 -23.102 24.454 hybrid contribution 1.143 -0.407 1.137 1.663 sum -5.869 3.480 -21.965 23.000 Atomic orbital electron populations 1.22088 0.93681 1.02182 1.03529 1.21536 0.98255 0.99664 0.92936 0.89722 1.22680 0.98260 0.82296 0.98030 1.87947 1.74114 1.22494 1.45213 1.22571 0.98163 0.95722 0.85003 1.22242 1.03183 0.93837 0.99490 1.21407 1.01628 0.96217 0.93512 0.88475 1.20511 0.80787 0.83827 0.84423 1.90616 1.36639 1.27575 1.86429 1.46219 1.51134 1.34611 1.05412 1.20100 0.98311 0.95964 0.80908 1.19461 0.96823 0.99063 0.97946 1.20818 0.99357 0.95655 0.96370 1.20502 0.95875 1.00601 0.96069 1.21555 0.93871 0.95136 0.97588 1.20731 0.97954 0.96487 0.95513 1.20300 0.95469 0.99546 0.94993 1.19706 0.92308 0.93905 0.89112 1.43947 1.24510 1.34752 1.29498 1.18930 1.00632 1.13515 1.02423 0.89894 1.24844 0.98325 0.97910 0.99256 1.69907 1.28954 1.21321 1.36836 0.86093 0.80430 0.77376 0.81237 1.20983 1.21468 1.20986 1.19746 0.87040 0.94927 0.90212 0.89390 0.93213 0.92723 0.88553 0.93151 0.88442 0.92885 0.90202 0.89999 0.76326 0.90876 0.90872 0.86357 0.86104 0.86587 0.94623 0.94580 0.93377 0.91783 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.43 37.16 0.31 -1.18 16 2 C -0.10 -0.86 2.44 -90.48 -0.22 -1.08 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.06 0.46 6.25 37.21 0.23 0.69 16 5 O -0.38 -3.26 10.19 -35.23 -0.36 -3.62 16 6 C 0.06 0.41 6.84 37.21 0.25 0.66 16 7 C -0.15 -1.01 4.94 -26.59 -0.13 -1.14 16 8 C -0.11 -0.83 2.39 -91.59 -0.22 -1.05 16 9 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 10 C 0.52 5.38 6.86 -10.98 -0.08 5.31 16 11 O -0.54 -7.28 13.48 5.56 0.07 -7.20 16 12 N -0.72 -6.96 5.46 -61.47 -0.34 -7.30 16 13 C 0.17 1.88 5.80 -5.19 -0.03 1.85 16 14 C -0.13 -1.70 5.25 -104.65 -0.55 -2.25 16 15 C -0.10 -1.37 9.70 -39.61 -0.38 -1.75 16 16 C -0.11 -1.78 10.05 -39.54 -0.40 -2.18 16 17 C -0.08 -1.56 6.22 -104.57 -0.65 -2.21 16 18 C -0.11 -1.95 6.22 -104.57 -0.65 -2.60 16 19 C -0.08 -1.24 9.70 -39.54 -0.38 -1.62 16 20 C 0.18 3.67 7.25 -5.08 -0.04 3.63 16 21 N -0.60 -15.29 3.41 -175.67 -0.60 -15.89 16 22 C -0.23 -6.21 10.32 -15.06 -0.16 -6.36 16 23 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 24 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 25 N -0.92 -26.33 10.44 55.49 0.58 -25.75 16 26 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 C 0.21 4.93 5.39 -5.08 -0.03 4.90 16 31 H 0.09 1.03 5.28 -51.93 -0.27 0.75 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.52 6.14 -51.93 -0.32 0.21 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.45 7.69 -51.93 -0.40 0.05 16 39 H 0.08 0.65 6.63 -51.93 -0.34 0.30 16 40 H 0.40 3.33 7.97 -40.82 -0.33 3.00 16 41 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.06 1.68 7.49 -51.93 -0.39 1.29 16 50 H 0.06 1.70 7.48 -51.93 -0.39 1.32 16 LS Contribution 391.84 15.07 5.90 5.90 Total: -1.00 -31.21 391.84 -10.86 -42.07 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.90 Total: 1.99 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.21 Total: -6.67 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.35 Total: -48.94 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.28 Total: -10.83 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.21 -10.86 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054280164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.238 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds