Wall clock time and date at job start Wed Apr 1 2020 03:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.89312 * 2 1 4 4 C 1.55127 * 110.93710 * 124.08264 * 2 1 3 5 5 N 1.47430 * 104.71988 * 155.28603 * 4 2 1 6 6 C 1.34774 * 125.64487 * 155.81720 * 5 4 2 7 7 O 1.21285 * 120.00265 * 359.71567 * 6 5 4 8 8 C 1.50702 * 119.99917 * 179.71422 * 6 5 4 9 9 C 1.50695 * 109.47075 * 179.97438 * 8 6 5 10 10 C 1.38289 * 120.00816 * 90.00333 * 9 8 6 11 11 C 1.37975 * 119.95826 * 180.02562 * 10 9 8 12 12 C 1.39143 * 120.21544 * 359.93810 * 11 10 9 13 13 C 1.38377 * 119.69434 * 359.94603 * 12 11 10 14 14 C 1.38104 * 120.00889 * 269.97450 * 9 8 6 15 15 C 1.50770 * 121.40385 * 180.26552 * 13 12 11 16 16 C 1.53072 * 109.68043 * 342.18726 * 15 13 12 17 17 C 1.53416 * 108.29275 * 48.20656 * 16 15 13 18 18 O 1.35838 * 118.49993 * 179.76234 * 12 11 10 19 19 C 1.47017 * 108.70446 * 335.54902 * 5 4 2 20 20 C 1.54324 * 107.27170 * 1.29036 * 19 5 4 21 21 H 1.08998 * 110.72598 * 140.73281 * 20 19 5 22 22 N 1.46511 * 110.71978 * 263.82882 * 20 19 5 23 23 C 1.36931 * 119.99814 * 273.54432 * 22 20 19 24 24 H 1.08003 * 120.00298 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99714 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00134 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99827 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47303 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47124 * 119.99832 * 27 25 23 30 30 H 1.48497 * 109.47178 * 239.99772 * 27 25 23 31 31 H 1.08992 * 109.47614 * 183.88129 * 1 2 3 32 32 H 1.09002 * 109.47147 * 303.88095 * 1 2 3 33 33 H 1.09001 * 109.47247 * 63.87231 * 1 2 3 34 34 H 1.09001 * 110.49745 * 36.44203 * 4 2 1 35 35 H 1.08997 * 110.34088 * 274.04355 * 4 2 1 36 36 H 1.09001 * 109.47291 * 59.99891 * 8 6 5 37 37 H 1.09006 * 109.46710 * 299.99923 * 8 6 5 38 38 H 1.08001 * 120.02585 * 0.32888 * 10 9 8 39 39 H 1.08000 * 119.89092 * 179.97438 * 11 10 9 40 40 H 1.08001 * 119.84067 * 0.03054 * 14 9 8 41 41 H 1.09000 * 109.43661 * 222.12479 * 15 13 12 42 42 H 1.09000 * 109.40116 * 102.23005 * 15 13 12 43 43 H 1.08994 * 109.70193 * 288.50937 * 16 15 13 44 44 H 1.08998 * 109.73238 * 167.92539 * 16 15 13 45 45 H 1.09008 * 109.67832 * 175.56062 * 17 16 15 46 46 H 1.09003 * 109.71098 * 55.02585 * 17 16 15 47 47 H 1.09003 * 109.88169 * 120.70722 * 19 5 4 48 48 H 1.09006 * 109.88299 * 241.71821 * 19 5 4 49 49 H 0.96994 * 119.99740 * 93.54558 * 22 20 19 50 50 H 0.96998 * 119.99585 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0843 -0.8119 1.2000 5 7 3.4280 -1.2424 0.7723 6 6 4.4489 -1.5606 1.5926 7 8 4.3025 -1.4993 2.7950 8 6 5.7724 -1.9926 1.0157 9 6 6.7361 -2.2882 2.1359 10 6 6.8124 -3.5640 2.6640 11 6 7.6947 -3.8334 3.6900 12 6 8.5101 -2.8254 4.1952 13 6 8.4332 -1.5503 3.6631 14 6 7.5437 -1.2852 2.6350 15 6 9.3025 -0.4308 4.1771 16 6 9.8624 -0.8027 5.5523 17 6 10.4360 -2.2233 5.4707 18 8 9.3624 -3.1280 5.2087 19 6 3.4677 -1.2732 -0.6970 20 6 2.0861 -0.8075 -1.2026 21 1 2.1912 -0.1718 -2.0818 22 7 1.2271 -1.9574 -1.4965 23 6 1.2816 -2.5560 -2.7268 24 1 1.9581 -2.1807 -3.4805 25 6 0.4673 -3.6451 -3.0055 26 7 -0.3568 -4.1028 -2.0869 27 14 0.5422 -4.4622 -4.6836 28 1 1.5423 -3.7634 -5.5302 29 1 0.9357 -5.8852 -4.5242 30 1 -0.7922 -4.3872 -5.3307 31 1 -0.3634 -1.0252 0.0696 32 1 -0.3633 0.5729 0.8532 33 1 -0.3634 0.4526 -0.9226 34 1 1.4536 -1.6785 1.3985 35 1 2.1524 -0.1803 2.0857 36 1 6.1748 -1.1944 0.3919 37 1 5.6303 -2.8890 0.4121 38 1 6.1853 -4.3502 2.2704 39 1 7.7531 -4.8300 4.1019 40 1 7.4822 -0.2897 2.2209 41 1 8.7093 0.4797 4.2611 42 1 10.1263 -0.2643 3.4830 43 1 9.0649 -0.7706 6.2946 44 1 10.6511 -0.1034 5.8299 45 1 10.9116 -2.4820 6.4167 46 1 11.1677 -2.2785 4.6646 47 1 4.2425 -0.5984 -1.0611 48 1 3.6684 -2.2878 -1.0412 49 1 0.6198 -2.2946 -0.8195 50 1 -0.9254 -4.8641 -2.2815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054771226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:36 Heat of formation + Delta-G solvation = -42.576807 kcal Electronic energy + Delta-G solvation = -29890.508670 eV Core-core repulsion = 25882.553011 eV Total energy + Delta-G solvation = -4007.955659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.83493 -39.79121 -38.13770 -37.14357 -34.51625 -33.92568 -32.68682 -32.02412 -30.58431 -30.48541 -28.15724 -27.66562 -26.06095 -25.28589 -23.88537 -23.42678 -22.53218 -21.94844 -19.93941 -19.29010 -18.69713 -17.89301 -17.56059 -16.87104 -16.62367 -15.98022 -15.70215 -15.31672 -14.69981 -14.63726 -14.54056 -14.35972 -14.06125 -13.94914 -13.72697 -13.39920 -13.33622 -13.08158 -12.95014 -12.69015 -12.57752 -12.14911 -12.03270 -11.80738 -11.65010 -11.52284 -11.46911 -11.13449 -11.12204 -10.99205 -10.95683 -10.78108 -10.58123 -10.47783 -10.25279 -9.93030 -9.70198 -9.55650 -9.03656 -8.81532 -8.21190 -8.09284 -7.08824 -5.86342 -3.16391 1.29090 1.35259 2.95224 3.12402 3.31964 3.37464 3.43274 3.45782 3.75585 4.34274 4.41361 4.49838 4.50499 4.70098 4.76683 4.81794 4.89902 5.04187 5.15049 5.17665 5.19548 5.24119 5.30473 5.34837 5.38173 5.49698 5.52447 5.56177 5.58223 5.63698 5.72773 5.78017 5.80627 5.93370 5.95845 6.00638 6.18286 6.19334 6.25471 6.33250 6.34726 6.36410 6.52137 6.60305 6.65268 6.72782 6.75085 6.91847 7.33811 7.61810 7.92771 8.31515 8.50179 9.43575 9.98589 10.33301 11.35784 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002254 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.805468 B =12416.680303 C =13338.915758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.115 3.885 5 N -0.608 5.608 6 C 0.526 3.474 7 O -0.547 6.547 8 C -0.094 4.094 9 C -0.088 4.088 10 C -0.071 4.071 11 C -0.146 4.146 12 C 0.126 3.874 13 C -0.161 4.161 14 C -0.070 4.070 15 C -0.076 4.076 16 C -0.160 4.160 17 C 0.061 3.939 18 O -0.318 6.318 19 C 0.070 3.930 20 C 0.172 3.828 21 H 0.070 0.930 22 N -0.712 5.712 23 C -0.246 4.246 24 H 0.073 0.927 25 C -0.009 4.009 26 N -0.928 5.928 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.387 0.613 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.216 8.353 11.016 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.133 4.133 3 H 0.096 0.904 4 C -0.007 4.007 5 N -0.342 5.342 6 C 0.315 3.685 7 O -0.425 6.425 8 C -0.134 4.134 9 C -0.089 4.089 10 C -0.089 4.089 11 C -0.165 4.165 12 C 0.081 3.919 13 C -0.162 4.162 14 C -0.088 4.088 15 C -0.113 4.113 16 C -0.198 4.198 17 C -0.014 4.014 18 O -0.233 6.233 19 C -0.056 4.056 20 C 0.060 3.940 21 H 0.088 0.912 22 N -0.354 5.354 23 C -0.377 4.377 24 H 0.091 0.909 25 C -0.206 4.206 26 N -0.576 5.576 27 Si 0.738 3.262 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.223 0.777 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.209 8.131 11.636 23.886 hybrid contribution -0.134 -0.491 -0.860 1.000 sum 19.075 7.640 10.776 23.203 Atomic orbital electron populations 1.21546 0.93438 1.02972 1.00946 1.22643 0.96917 0.98389 0.95399 0.90372 1.22282 0.82981 0.98276 0.97155 1.48470 1.11851 1.66059 1.07793 1.20129 0.84741 0.77399 0.86252 1.90691 1.83328 1.53893 1.14603 1.20577 0.91869 1.03942 0.97011 1.19186 0.97452 0.93833 0.98414 1.20809 0.96601 0.96475 0.95003 1.20516 0.98827 0.98451 0.98691 1.18634 0.91944 0.92472 0.88808 1.19682 1.02194 0.93812 1.00544 1.20671 0.94408 0.98537 0.95173 1.20442 0.98370 0.96588 0.95921 1.22235 1.01966 0.97311 0.98268 1.22932 0.87673 0.88741 1.02029 1.85984 1.39069 1.49216 1.48989 1.23283 1.01470 1.02157 0.78656 1.21206 0.88351 0.89853 0.94634 0.91249 1.42468 1.45457 1.32752 1.14688 1.19263 1.18489 1.09383 0.90539 0.90941 1.24758 0.98973 0.98922 0.97922 1.69667 1.27351 1.27467 1.33113 0.86136 0.77251 0.79229 0.83628 1.20500 1.21869 1.21850 0.91203 0.93690 0.92116 0.91316 0.91431 0.88352 0.87876 0.85380 0.85300 0.86103 0.90068 0.90618 0.90383 0.89860 0.87726 0.91935 0.92774 0.90454 0.77731 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.85 37.16 0.33 -1.71 16 2 C -0.11 -1.75 3.53 -88.35 -0.31 -2.06 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.92 6.36 -2.41 -0.02 1.91 16 5 N -0.61 -10.11 3.32 -170.38 -0.57 -10.68 16 6 C 0.53 8.83 7.84 -10.99 -0.09 8.75 16 7 O -0.55 -10.98 16.29 5.55 0.09 -10.89 16 8 C -0.09 -1.23 5.02 -29.04 -0.15 -1.38 16 9 C -0.09 -1.19 4.37 -104.65 -0.46 -1.65 16 10 C -0.07 -0.95 9.70 -39.66 -0.38 -1.33 16 11 C -0.15 -1.90 9.94 -39.34 -0.39 -2.29 16 12 C 0.13 1.62 6.47 -39.19 -0.25 1.37 16 13 C -0.16 -1.93 5.75 -104.44 -0.60 -2.53 16 14 C -0.07 -0.87 9.32 -39.53 -0.37 -1.24 16 15 C -0.08 -0.66 5.86 -27.81 -0.16 -0.82 16 16 C -0.16 -1.17 6.19 -26.48 -0.16 -1.34 16 17 C 0.06 0.48 7.03 37.37 0.26 0.74 16 18 O -0.32 -3.75 10.27 -19.23 -0.20 -3.95 16 19 C 0.07 1.14 6.22 -3.07 -0.02 1.12 16 20 C 0.17 3.05 3.37 -66.09 -0.22 2.83 16 21 H 0.07 1.21 8.12 -51.93 -0.42 0.78 16 22 N -0.71 -16.19 4.61 -51.64 -0.24 -16.43 16 23 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 27 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.07 1.27 6.38 -51.93 -0.33 0.94 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 35 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16 36 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 38 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.39 8.05 -51.93 -0.42 0.98 16 49 H 0.39 9.53 6.10 -40.82 -0.25 9.28 16 50 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 402.29 15.07 6.06 6.06 Total: -1.00 -31.93 402.29 -10.52 -42.45 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.13 Total: 9.57 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.24 Total: -6.43 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.08 Total: -53.20 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.11 Total: -14.83 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.93 -10.52 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054771226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.127 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds