Wall clock time and date at job start Wed Apr 1 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.89312 * 2 1 4 4 C 1.55127 * 110.93710 * 124.08264 * 2 1 3 5 5 N 1.47430 * 104.71988 * 155.28603 * 4 2 1 6 6 C 1.34774 * 125.64487 * 155.81720 * 5 4 2 7 7 O 1.21285 * 120.00265 * 359.71567 * 6 5 4 8 8 C 1.50702 * 119.99917 * 179.71422 * 6 5 4 9 9 C 1.50695 * 109.47075 * 179.97438 * 8 6 5 10 10 C 1.38289 * 120.00816 * 90.00333 * 9 8 6 11 11 C 1.37975 * 119.95826 * 180.02562 * 10 9 8 12 12 C 1.39143 * 120.21544 * 359.93810 * 11 10 9 13 13 C 1.38377 * 119.69434 * 359.94603 * 12 11 10 14 14 C 1.38104 * 120.00889 * 269.97450 * 9 8 6 15 15 C 1.50770 * 121.40385 * 180.26552 * 13 12 11 16 16 C 1.53072 * 109.68043 * 342.18726 * 15 13 12 17 17 C 1.53416 * 108.29275 * 48.20656 * 16 15 13 18 18 O 1.35838 * 118.49993 * 179.76234 * 12 11 10 19 19 C 1.47017 * 108.70446 * 335.54902 * 5 4 2 20 20 C 1.54324 * 107.27170 * 1.29036 * 19 5 4 21 21 H 1.08998 * 110.72598 * 140.73281 * 20 19 5 22 22 N 1.46511 * 110.71978 * 263.82882 * 20 19 5 23 23 C 1.36931 * 119.99814 * 273.54432 * 22 20 19 24 24 H 1.08003 * 120.00298 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99714 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00134 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99827 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47303 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47124 * 119.99832 * 27 25 23 30 30 H 1.48497 * 109.47178 * 239.99772 * 27 25 23 31 31 H 1.08992 * 109.47614 * 183.88129 * 1 2 3 32 32 H 1.09002 * 109.47147 * 303.88095 * 1 2 3 33 33 H 1.09001 * 109.47247 * 63.87231 * 1 2 3 34 34 H 1.09001 * 110.49745 * 36.44203 * 4 2 1 35 35 H 1.08997 * 110.34088 * 274.04355 * 4 2 1 36 36 H 1.09001 * 109.47291 * 59.99891 * 8 6 5 37 37 H 1.09006 * 109.46710 * 299.99923 * 8 6 5 38 38 H 1.08001 * 120.02585 * 0.32888 * 10 9 8 39 39 H 1.08000 * 119.89092 * 179.97438 * 11 10 9 40 40 H 1.08001 * 119.84067 * 0.03054 * 14 9 8 41 41 H 1.09000 * 109.43661 * 222.12479 * 15 13 12 42 42 H 1.09000 * 109.40116 * 102.23005 * 15 13 12 43 43 H 1.08994 * 109.70193 * 288.50937 * 16 15 13 44 44 H 1.08998 * 109.73238 * 167.92539 * 16 15 13 45 45 H 1.09008 * 109.67832 * 175.56062 * 17 16 15 46 46 H 1.09003 * 109.71098 * 55.02585 * 17 16 15 47 47 H 1.09003 * 109.88169 * 120.70722 * 19 5 4 48 48 H 1.09006 * 109.88299 * 241.71821 * 19 5 4 49 49 H 0.96994 * 119.99740 * 93.54558 * 22 20 19 50 50 H 0.96998 * 119.99585 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0843 -0.8119 1.2000 5 7 3.4280 -1.2424 0.7723 6 6 4.4489 -1.5606 1.5926 7 8 4.3025 -1.4993 2.7950 8 6 5.7724 -1.9926 1.0157 9 6 6.7361 -2.2882 2.1359 10 6 6.8124 -3.5640 2.6640 11 6 7.6947 -3.8334 3.6900 12 6 8.5101 -2.8254 4.1952 13 6 8.4332 -1.5503 3.6631 14 6 7.5437 -1.2852 2.6350 15 6 9.3025 -0.4308 4.1771 16 6 9.8624 -0.8027 5.5523 17 6 10.4360 -2.2233 5.4707 18 8 9.3624 -3.1280 5.2087 19 6 3.4677 -1.2732 -0.6970 20 6 2.0861 -0.8075 -1.2026 21 1 2.1912 -0.1718 -2.0818 22 7 1.2271 -1.9574 -1.4965 23 6 1.2816 -2.5560 -2.7268 24 1 1.9581 -2.1807 -3.4805 25 6 0.4673 -3.6451 -3.0055 26 7 -0.3568 -4.1028 -2.0869 27 14 0.5422 -4.4622 -4.6836 28 1 1.5423 -3.7634 -5.5302 29 1 0.9357 -5.8852 -4.5242 30 1 -0.7922 -4.3872 -5.3307 31 1 -0.3634 -1.0252 0.0696 32 1 -0.3633 0.5729 0.8532 33 1 -0.3634 0.4526 -0.9226 34 1 1.4536 -1.6785 1.3985 35 1 2.1524 -0.1803 2.0857 36 1 6.1748 -1.1944 0.3919 37 1 5.6303 -2.8890 0.4121 38 1 6.1853 -4.3502 2.2704 39 1 7.7531 -4.8300 4.1019 40 1 7.4822 -0.2897 2.2209 41 1 8.7093 0.4797 4.2611 42 1 10.1263 -0.2643 3.4830 43 1 9.0649 -0.7706 6.2946 44 1 10.6511 -0.1034 5.8299 45 1 10.9116 -2.4820 6.4167 46 1 11.1677 -2.2785 4.6646 47 1 4.2425 -0.5984 -1.0611 48 1 3.6684 -2.2878 -1.0412 49 1 0.6198 -2.2946 -0.8195 50 1 -0.9254 -4.8641 -2.2815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054771226.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:35 Heat of formation + Delta-G solvation = -60.476183 kcal Electronic energy + Delta-G solvation = -29891.284845 eV Core-core repulsion = 25882.553011 eV Total energy + Delta-G solvation = -4008.731835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71542 -41.06453 -39.30463 -38.29827 -35.65947 -35.24198 -34.04739 -33.18253 -32.17922 -31.41129 -29.34578 -29.05845 -27.08380 -26.23730 -25.73582 -24.26942 -23.62435 -23.15487 -20.82873 -20.68976 -19.89501 -19.35456 -18.74391 -17.97653 -17.74901 -17.21127 -16.73522 -16.49875 -16.26980 -15.84434 -15.54657 -15.41200 -15.38266 -14.93480 -14.77948 -14.65490 -14.45356 -14.22143 -14.09276 -14.02426 -13.48468 -13.41179 -13.29411 -13.03813 -12.92371 -12.86053 -12.78894 -12.51219 -12.29694 -12.26860 -12.05170 -11.96579 -11.85114 -11.70056 -11.44111 -11.36336 -11.33837 -11.03128 -10.83465 -9.73973 -9.59375 -9.03159 -8.97721 -7.90330 -5.18202 0.34643 0.38646 1.50497 1.51615 1.60541 1.64881 2.08536 2.37214 2.59300 2.75813 3.42119 3.51917 3.63622 3.70433 3.79217 3.85103 3.91232 3.94614 3.98305 4.02933 4.11775 4.19055 4.28175 4.40901 4.44789 4.46229 4.59110 4.60421 4.63485 4.66445 4.68076 4.72747 4.75942 4.90112 4.92297 5.00343 5.02606 5.03869 5.09142 5.17130 5.22797 5.24959 5.31966 5.37275 5.44420 5.55815 5.61922 5.63007 5.82005 6.31305 6.50032 6.61788 7.18708 7.38777 8.13955 8.36055 9.33261 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002254 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.805468 B =12416.680303 C =13338.915758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.111 0.889 4 C 0.114 3.886 5 N -0.610 5.610 6 C 0.523 3.477 7 O -0.585 6.585 8 C -0.085 4.085 9 C -0.104 4.104 10 C -0.088 4.088 11 C -0.163 4.163 12 C 0.115 3.885 13 C -0.167 4.167 14 C -0.077 4.077 15 C -0.078 4.078 16 C -0.156 4.156 17 C 0.051 3.949 18 O -0.336 6.336 19 C 0.080 3.920 20 C 0.161 3.839 21 H 0.084 0.916 22 N -0.724 5.724 23 C -0.230 4.230 24 H 0.085 0.915 25 C -0.077 4.077 26 N -0.970 5.970 27 Si 0.966 3.034 28 H -0.261 1.261 29 H -0.302 1.302 30 H -0.300 1.300 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.128 0.872 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.057 0.943 49 H 0.374 0.626 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.856 10.850 10.490 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 H 0.129 0.871 4 C -0.008 4.008 5 N -0.343 5.343 6 C 0.313 3.687 7 O -0.466 6.466 8 C -0.124 4.124 9 C -0.105 4.105 10 C -0.106 4.106 11 C -0.181 4.181 12 C 0.070 3.930 13 C -0.168 4.168 14 C -0.095 4.095 15 C -0.115 4.115 16 C -0.194 4.194 17 C -0.023 4.023 18 O -0.251 6.251 19 C -0.045 4.045 20 C 0.050 3.950 21 H 0.102 0.898 22 N -0.364 5.364 23 C -0.361 4.361 24 H 0.103 0.897 25 C -0.269 4.269 26 N -0.622 5.622 27 Si 0.797 3.203 28 H -0.185 1.185 29 H -0.229 1.229 30 H -0.227 1.227 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.146 0.854 46 H 0.092 0.908 47 H 0.112 0.888 48 H 0.075 0.925 49 H 0.207 0.793 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.903 10.679 11.087 26.772 hybrid contribution -0.876 -1.192 -0.590 1.592 sum 21.027 9.487 10.497 25.345 Atomic orbital electron populations 1.21477 0.93755 1.01223 1.01942 1.22606 0.96546 0.99316 0.93249 0.87069 1.22235 0.82966 0.97513 0.98126 1.48574 1.11739 1.65859 1.08084 1.20788 0.85736 0.76402 0.85786 1.90670 1.84122 1.55472 1.16319 1.20583 0.89708 1.05042 0.97113 1.19333 0.98059 0.94117 0.99004 1.20947 0.97120 0.96957 0.95595 1.20707 0.99240 0.99184 0.99004 1.18818 0.92207 0.92886 0.89118 1.20096 1.02253 0.94447 1.00012 1.20950 0.94202 0.99061 0.95299 1.20561 0.98521 0.95419 0.96973 1.22241 1.02380 0.97651 0.97104 1.23291 0.86837 0.88553 1.03618 1.85957 1.39842 1.50763 1.48516 1.23108 1.01275 1.01919 0.78201 1.21509 0.88503 0.88700 0.96238 0.89830 1.42652 1.46188 1.34020 1.13581 1.19691 1.16743 1.08236 0.91472 0.89692 1.25493 0.99849 1.00511 1.01012 1.69828 1.29063 1.28247 1.35022 0.85166 0.77017 0.77776 0.80361 1.18466 1.22939 1.22728 0.94532 0.91236 0.92277 0.94134 0.90869 0.85384 0.87304 0.85379 0.84757 0.84325 0.89483 0.88720 0.91798 0.86773 0.85441 0.90825 0.88754 0.92465 0.79251 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.85 71.98 0.64 -3.18 16 2 C -0.10 -2.80 3.53 -9.32 -0.03 -2.84 16 3 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.11 3.73 6.36 86.93 0.55 4.29 16 5 N -0.61 -19.46 3.32 -811.34 -2.70 -22.15 16 6 C 0.52 17.05 7.84 87.66 0.69 17.74 16 7 O -0.58 -23.50 16.29 -3.05 -0.05 -23.55 16 8 C -0.09 -2.10 5.02 29.10 0.15 -1.95 16 9 C -0.10 -2.75 4.37 -19.89 -0.09 -2.84 16 10 C -0.09 -2.41 9.70 22.22 0.22 -2.19 16 11 C -0.16 -4.33 9.94 22.42 0.22 -4.11 16 12 C 0.11 2.92 6.47 22.52 0.15 3.06 16 13 C -0.17 -3.79 5.75 -19.75 -0.11 -3.90 16 14 C -0.08 -1.82 9.32 22.30 0.21 -1.62 16 15 C -0.08 -1.16 5.86 29.89 0.18 -0.98 16 16 C -0.16 -1.90 6.19 30.76 0.19 -1.71 16 17 C 0.05 0.69 7.03 72.12 0.51 1.20 16 18 O -0.34 -7.68 10.27 -91.73 -0.94 -8.62 16 19 C 0.08 2.40 6.22 86.73 0.54 2.94 16 20 C 0.16 5.39 3.37 46.18 0.16 5.54 16 21 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 22 N -0.72 -32.84 4.61 -317.30 -1.46 -34.30 16 23 C -0.23 -11.61 9.98 84.04 0.84 -10.77 16 24 H 0.09 4.02 7.83 -2.91 -0.02 3.99 16 25 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 26 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 27 Si 0.97 44.39 29.55 68.60 2.03 46.42 16 28 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 30 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 31 H 0.04 1.35 6.38 -2.39 -0.02 1.33 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.54 7.99 -2.39 -0.02 1.52 16 35 H 0.07 2.30 8.03 -2.39 -0.02 2.28 16 36 H 0.13 2.34 8.08 -2.39 -0.02 2.32 16 37 H 0.11 2.55 8.09 -2.38 -0.02 2.53 16 38 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 39 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.06 1.97 8.05 -2.38 -0.02 1.96 16 49 H 0.37 18.95 6.10 -92.71 -0.57 18.38 16 50 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -71.24 402.29 2.98 -68.26 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.37 Total: 36.55 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.45 Total: -5.04 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -3.88 Total: -114.01 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.99 Total: -32.18 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -71.24 2.98 -68.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054771226.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.782 kcal (2) G-P(sol) polarization free energy of solvation -71.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds