Wall clock time and date at job start Wed Apr 1 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99510 * 2 1 4 4 C 1.54333 * 109.77649 * 121.16323 * 2 1 3 5 5 H 1.09008 * 110.51487 * 215.81002 * 4 2 1 6 6 N 1.46498 * 110.85274 * 339.03032 * 4 2 1 7 7 C 1.36944 * 120.00021 * 200.14673 * 6 4 2 8 8 H 1.07999 * 119.99677 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00042 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99854 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99903 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47212 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47054 * 120.00116 * 11 9 7 14 14 H 1.48498 * 109.47146 * 239.99974 * 11 9 7 15 15 C 1.55157 * 103.02301 * 97.49894 * 4 2 1 16 16 C 1.54915 * 101.58018 * 35.30342 * 15 4 2 17 17 N 1.47016 * 109.88295 * 238.90529 * 2 1 3 18 18 C 1.34778 * 125.65119 * 59.55738 * 17 2 1 19 19 O 1.21555 * 119.99475 * 3.49560 * 18 17 2 20 20 C 1.47845 * 120.00196 * 183.49277 * 18 17 2 21 21 C 1.39596 * 120.14267 * 332.73304 * 20 18 17 22 22 C 1.37936 * 119.85259 * 180.02562 * 21 20 18 23 23 C 1.38386 * 120.14464 * 359.97438 * 22 21 20 24 24 C 1.38345 * 120.28912 * 359.72456 * 23 22 21 25 25 C 1.50696 * 119.92590 * 180.28041 * 24 23 22 26 26 H 1.09003 * 110.75346 * 182.29155 * 25 24 23 27 27 C 1.55305 * 110.84973 * 305.99087 * 25 24 23 28 28 C 1.54945 * 100.94464 * 152.32397 * 27 25 24 29 29 O 1.43646 * 105.13605 * 323.55625 * 28 27 25 30 30 C 1.43241 * 109.97209 * 24.42452 * 29 28 27 31 31 C 1.37977 * 120.14401 * 0.55511 * 24 23 22 32 32 H 1.09003 * 109.47228 * 179.64526 * 1 2 3 33 33 H 1.09001 * 109.47397 * 299.64184 * 1 2 3 34 34 H 1.08997 * 109.47013 * 59.64328 * 1 2 3 35 35 H 0.96992 * 120.00105 * 20.14838 * 6 4 2 36 36 H 0.97000 * 120.00037 * 180.02562 * 10 9 7 37 37 H 1.08994 * 111.00399 * 277.23451 * 15 4 2 38 38 H 1.08998 * 111.00699 * 153.37177 * 15 4 2 39 39 H 1.08995 * 110.37233 * 204.15607 * 16 15 4 40 40 H 1.08997 * 110.36672 * 81.82572 * 16 15 4 41 41 H 1.07998 * 120.07725 * 0.03840 * 21 20 18 42 42 H 1.07999 * 119.92973 * 179.97438 * 22 21 20 43 43 H 1.07991 * 119.85588 * 180.02562 * 23 22 21 44 44 H 1.09005 * 111.12246 * 270.24232 * 27 25 24 45 45 H 1.08999 * 111.12410 * 34.40507 * 27 25 24 46 46 H 1.08998 * 110.30878 * 204.64125 * 28 27 25 47 47 H 1.09001 * 110.30599 * 82.47080 * 28 27 25 48 48 H 1.08993 * 109.83091 * 238.77775 * 30 29 28 49 49 H 1.08998 * 109.82753 * 117.80552 * 30 29 28 50 50 H 1.08005 * 120.07071 * 179.72312 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9606 -0.2814 1.6197 6 7 1.0257 -0.8101 2.2863 7 6 1.3838 -1.0487 3.5864 8 1 2.4229 -1.1941 3.8422 9 6 0.4111 -1.1047 4.5751 10 7 -0.8553 -0.9279 4.2631 11 14 0.8995 -1.4309 6.3483 12 1 2.3731 -1.5926 6.4341 13 1 0.4773 -0.2873 7.1964 14 1 0.2363 -2.6714 6.8242 15 6 2.3562 -2.1697 0.6916 16 6 2.8613 -1.8466 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.1304 0.6140 -2.7198 20 6 2.2806 -1.2373 -3.5626 21 6 3.4321 -2.0050 -3.3802 22 6 3.8984 -2.7982 -4.4079 23 6 3.2271 -2.8344 -5.6174 24 6 2.0818 -2.0807 -5.8025 25 6 1.3536 -2.1312 -7.1209 26 1 0.5000 -1.4533 -7.1169 27 6 2.3157 -1.8085 -8.2965 28 6 1.6401 -2.5886 -9.4523 29 8 1.1284 -3.7867 -8.8473 30 6 0.9086 -3.5729 -7.4481 31 6 1.6080 -1.2787 -4.7847 32 1 -0.3634 -1.0277 -0.0064 33 1 -0.3634 0.5083 0.8932 34 1 -0.3633 0.5194 -0.8867 35 1 0.0925 -0.6798 2.0564 36 1 -1.5350 -0.9667 4.9541 37 1 1.4523 -2.7778 0.6580 38 1 3.1329 -2.6591 1.2792 39 1 2.7179 -2.7048 -1.3932 40 1 3.9123 -1.5588 -0.7114 41 1 3.9567 -1.9782 -2.4366 42 1 4.7895 -3.3923 -4.2683 43 1 3.5960 -3.4573 -6.4187 44 1 2.3370 -0.7386 -8.5044 45 1 3.3181 -2.1885 -8.0994 46 1 2.3725 -2.8358 -10.2207 47 1 0.8259 -2.0027 -9.8789 48 1 1.4989 -4.2825 -6.8684 49 1 -0.1496 -3.6947 -7.2172 50 1 0.7162 -0.6875 -4.9320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074719685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:43 Heat of formation + Delta-G solvation = -25.673935 kcal Electronic energy + Delta-G solvation = -30005.098117 eV Core-core repulsion = 25997.875421 eV Total energy + Delta-G solvation = -4007.222696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.78915 -39.98293 -38.55373 -37.34978 -34.45991 -33.74545 -31.92752 -31.20242 -30.85179 -30.50592 -29.08467 -28.48530 -25.37598 -24.61875 -23.71604 -23.05643 -22.57363 -22.48648 -21.08634 -19.74365 -18.76632 -17.61556 -17.38483 -16.86353 -16.65608 -16.10049 -15.70435 -15.66354 -15.09501 -14.99704 -14.66181 -14.33658 -14.11498 -13.75302 -13.67378 -13.62723 -13.39590 -13.11823 -12.86692 -12.61221 -12.53485 -12.18593 -11.98521 -11.85644 -11.80900 -11.64594 -11.54510 -11.32582 -11.17223 -11.08696 -11.00778 -10.81453 -10.50160 -10.23389 -10.00365 -9.94233 -9.78255 -9.62111 -9.18929 -9.02448 -8.93719 -8.45349 -7.05553 -5.84669 -3.14666 0.70503 1.05890 2.77971 3.05336 3.38823 3.44526 3.45491 3.46907 3.58858 4.10766 4.20148 4.40916 4.52074 4.52635 4.61138 4.70230 4.74710 4.76205 4.87259 4.95479 5.06596 5.17808 5.23747 5.27897 5.30299 5.34444 5.40301 5.46565 5.48002 5.52931 5.58041 5.59376 5.63729 5.74350 5.78056 5.98959 6.06573 6.09169 6.11930 6.18481 6.21372 6.28336 6.51649 6.51955 6.54939 6.60968 6.68409 6.79693 6.94969 7.63893 7.68392 8.26456 8.33905 9.45506 10.00266 10.35163 11.37814 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002041 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.954700 B =13715.331806 C =13900.736226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.073 0.927 4 C 0.174 3.826 5 H 0.063 0.937 6 N -0.717 5.717 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.089 3.911 17 N -0.601 5.601 18 C 0.569 3.431 19 O -0.539 6.539 20 C -0.118 4.118 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.096 4.096 24 C -0.086 4.086 25 C -0.082 4.082 26 H 0.096 0.904 27 C -0.149 4.149 28 C 0.050 3.950 29 O -0.385 6.385 30 C 0.058 3.942 31 C -0.058 4.058 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.391 0.609 36 H 0.256 0.744 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.534 -4.517 -24.827 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.092 0.908 4 C 0.062 3.938 5 H 0.081 0.919 6 N -0.361 5.361 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.196 4.196 16 C -0.034 4.034 17 N -0.334 5.334 18 C 0.358 3.642 19 O -0.418 6.418 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.142 4.142 23 C -0.114 4.114 24 C -0.086 4.086 25 C -0.101 4.101 26 H 0.114 0.886 27 C -0.187 4.187 28 C -0.027 4.027 29 O -0.304 6.304 30 C -0.019 4.019 31 C -0.076 4.076 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.160 0.840 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.175 -4.161 -24.930 26.889 hybrid contribution 0.008 -0.027 1.131 1.131 sum 9.183 -4.188 -23.799 25.851 Atomic orbital electron populations 1.22001 0.94466 1.02499 1.02700 1.21867 0.95492 0.95829 0.84294 0.90847 1.21178 0.93245 0.92019 0.87375 0.91892 1.42674 1.05112 1.85269 1.03011 1.19276 0.93029 1.41197 0.83985 0.90986 1.24768 0.95306 1.02490 0.98198 1.69669 0.99291 1.56333 1.32518 0.86099 0.77515 0.77436 0.84986 1.20510 1.21829 1.21850 1.23597 1.01808 1.01376 0.92830 1.22750 0.94184 0.88936 0.97502 1.48486 1.49669 1.30391 1.04847 1.17913 0.80071 0.84874 0.81367 1.90763 1.40879 1.26837 1.83289 1.19937 0.97655 0.99697 0.94810 1.21960 0.95432 0.94427 0.99974 1.21103 1.00359 0.99683 0.93026 1.21159 0.94551 0.98183 0.97489 1.19450 0.96289 0.98272 0.94637 1.21703 0.98284 0.97910 0.92170 0.88581 1.23411 0.99515 1.01935 0.93789 1.23403 0.97475 0.86031 0.95747 1.88414 1.85979 1.34790 1.21254 1.23283 1.01204 0.95134 0.82263 1.21097 0.99194 0.96438 0.90909 0.92435 0.90070 0.92257 0.77081 0.93404 0.90545 0.90458 0.90510 0.91317 0.83997 0.85288 0.85709 0.89469 0.89854 0.89582 0.91985 0.90713 0.90974 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.94 37.16 0.29 -2.68 16 2 C 0.13 2.26 3.47 -66.95 -0.23 2.03 16 3 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.17 3.26 3.45 -66.09 -0.23 3.04 16 5 H 0.06 1.17 8.12 -51.92 -0.42 0.75 16 6 N -0.72 -17.06 5.02 -51.64 -0.26 -17.32 16 7 C -0.24 -6.45 9.98 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 10 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 11 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 C -0.15 -2.45 6.77 -24.58 -0.17 -2.62 16 16 C 0.09 1.13 5.02 -2.52 -0.01 1.12 16 17 N -0.60 -9.27 3.08 -164.11 -0.51 -9.77 16 18 C 0.57 9.07 7.40 -12.33 -0.09 8.98 16 19 O -0.54 -10.28 15.68 5.32 0.08 -10.19 16 20 C -0.12 -1.50 5.70 -104.97 -0.60 -2.10 16 21 C -0.10 -1.02 7.94 -39.19 -0.31 -1.33 16 22 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 23 C -0.10 -0.78 8.12 -39.49 -0.32 -1.10 16 24 C -0.09 -0.78 4.93 -104.68 -0.52 -1.30 16 25 C -0.08 -0.62 3.22 -89.82 -0.29 -0.91 16 26 H 0.10 0.70 7.95 -51.93 -0.41 0.28 16 27 C -0.15 -0.92 6.54 -24.48 -0.16 -1.08 16 28 C 0.05 0.32 7.78 38.18 0.30 0.62 16 29 O -0.38 -3.57 11.36 -35.23 -0.40 -3.97 16 30 C 0.06 0.46 7.31 37.88 0.28 0.74 16 31 C -0.06 -0.66 9.23 -39.19 -0.36 -1.02 16 32 H 0.06 1.10 8.05 -51.93 -0.42 0.69 16 33 H 0.08 1.65 6.73 -51.93 -0.35 1.30 16 34 H 0.06 1.11 6.86 -51.93 -0.36 0.76 16 35 H 0.39 9.88 4.94 -40.82 -0.20 9.68 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.86 6.15 -51.93 -0.32 0.54 16 40 H 0.07 0.73 7.29 -51.93 -0.38 0.35 16 41 H 0.14 1.30 4.56 -52.49 -0.24 1.06 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.13 0.79 7.28 -52.49 -0.38 0.41 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.49 6.80 -51.93 -0.35 0.14 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.59 7.04 -51.93 -0.37 0.22 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.13 1.55 7.80 -52.48 -0.41 1.14 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -31.86 390.17 -10.10 -41.96 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.54 Total: 9.36 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.06 Total: -6.04 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.04 Total: -53.72 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.32 Total: -14.17 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.86 -10.10 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074719685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.284 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds