Wall clock time and date at job start Wed Apr 1 2020 02:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.99510 * 2 1 4 4 C 1.54333 * 109.77649 * 121.16323 * 2 1 3 5 5 H 1.09008 * 110.51487 * 215.81002 * 4 2 1 6 6 N 1.46498 * 110.85274 * 339.03032 * 4 2 1 7 7 C 1.36944 * 120.00021 * 200.14673 * 6 4 2 8 8 H 1.07999 * 119.99677 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00042 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99854 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99903 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47212 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47054 * 120.00116 * 11 9 7 14 14 H 1.48498 * 109.47146 * 239.99974 * 11 9 7 15 15 C 1.55157 * 103.02301 * 97.49894 * 4 2 1 16 16 C 1.54915 * 101.58018 * 35.30342 * 15 4 2 17 17 N 1.47016 * 109.88295 * 238.90529 * 2 1 3 18 18 C 1.34778 * 125.65119 * 59.55738 * 17 2 1 19 19 O 1.21555 * 119.99475 * 3.49560 * 18 17 2 20 20 C 1.47845 * 120.00196 * 183.49277 * 18 17 2 21 21 C 1.39596 * 120.14267 * 332.73304 * 20 18 17 22 22 C 1.37936 * 119.85259 * 180.02562 * 21 20 18 23 23 C 1.38386 * 120.14464 * 359.97438 * 22 21 20 24 24 C 1.38345 * 120.28912 * 359.72456 * 23 22 21 25 25 C 1.50696 * 119.92590 * 180.28041 * 24 23 22 26 26 H 1.09003 * 110.75346 * 182.29155 * 25 24 23 27 27 C 1.55305 * 110.84973 * 305.99087 * 25 24 23 28 28 C 1.54945 * 100.94464 * 152.32397 * 27 25 24 29 29 O 1.43646 * 105.13605 * 323.55625 * 28 27 25 30 30 C 1.43241 * 109.97209 * 24.42452 * 29 28 27 31 31 C 1.37977 * 120.14401 * 0.55511 * 24 23 22 32 32 H 1.09003 * 109.47228 * 179.64526 * 1 2 3 33 33 H 1.09001 * 109.47397 * 299.64184 * 1 2 3 34 34 H 1.08997 * 109.47013 * 59.64328 * 1 2 3 35 35 H 0.96992 * 120.00105 * 20.14838 * 6 4 2 36 36 H 0.97000 * 120.00037 * 180.02562 * 10 9 7 37 37 H 1.08994 * 111.00399 * 277.23451 * 15 4 2 38 38 H 1.08998 * 111.00699 * 153.37177 * 15 4 2 39 39 H 1.08995 * 110.37233 * 204.15607 * 16 15 4 40 40 H 1.08997 * 110.36672 * 81.82572 * 16 15 4 41 41 H 1.07998 * 120.07725 * 0.03840 * 21 20 18 42 42 H 1.07999 * 119.92973 * 179.97438 * 22 21 20 43 43 H 1.07991 * 119.85588 * 180.02562 * 23 22 21 44 44 H 1.09005 * 111.12246 * 270.24232 * 27 25 24 45 45 H 1.08999 * 111.12410 * 34.40507 * 27 25 24 46 46 H 1.08998 * 110.30878 * 204.64125 * 28 27 25 47 47 H 1.09001 * 110.30599 * 82.47080 * 28 27 25 48 48 H 1.08993 * 109.83091 * 238.77775 * 30 29 28 49 49 H 1.08998 * 109.82753 * 117.80552 * 30 29 28 50 50 H 1.08005 * 120.07071 * 179.72312 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9606 -0.2814 1.6197 6 7 1.0257 -0.8101 2.2863 7 6 1.3838 -1.0487 3.5864 8 1 2.4229 -1.1941 3.8422 9 6 0.4111 -1.1047 4.5751 10 7 -0.8553 -0.9279 4.2631 11 14 0.8995 -1.4309 6.3483 12 1 2.3731 -1.5926 6.4341 13 1 0.4773 -0.2873 7.1964 14 1 0.2363 -2.6714 6.8242 15 6 2.3562 -2.1697 0.6916 16 6 2.8613 -1.8466 -0.7368 17 7 2.0300 -0.7140 -1.1839 18 6 1.7754 -0.3845 -2.4657 19 8 1.1304 0.6140 -2.7198 20 6 2.2806 -1.2373 -3.5626 21 6 3.4321 -2.0050 -3.3802 22 6 3.8984 -2.7982 -4.4079 23 6 3.2271 -2.8344 -5.6174 24 6 2.0818 -2.0807 -5.8025 25 6 1.3536 -2.1312 -7.1209 26 1 0.5000 -1.4533 -7.1169 27 6 2.3157 -1.8085 -8.2965 28 6 1.6401 -2.5886 -9.4523 29 8 1.1284 -3.7867 -8.8473 30 6 0.9086 -3.5729 -7.4481 31 6 1.6080 -1.2787 -4.7847 32 1 -0.3634 -1.0277 -0.0064 33 1 -0.3634 0.5083 0.8932 34 1 -0.3633 0.5194 -0.8867 35 1 0.0925 -0.6798 2.0564 36 1 -1.5350 -0.9667 4.9541 37 1 1.4523 -2.7778 0.6580 38 1 3.1329 -2.6591 1.2792 39 1 2.7179 -2.7048 -1.3932 40 1 3.9123 -1.5588 -0.7114 41 1 3.9567 -1.9782 -2.4366 42 1 4.7895 -3.3923 -4.2683 43 1 3.5960 -3.4573 -6.4187 44 1 2.3370 -0.7386 -8.5044 45 1 3.3181 -2.1885 -8.0994 46 1 2.3725 -2.8358 -10.2207 47 1 0.8259 -2.0027 -9.8789 48 1 1.4989 -4.2825 -6.8684 49 1 -0.1496 -3.6947 -7.2172 50 1 0.7162 -0.6875 -4.9320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074719685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:42 Heat of formation + Delta-G solvation = -44.667013 kcal Electronic energy + Delta-G solvation = -30005.921719 eV Core-core repulsion = 25997.875421 eV Total energy + Delta-G solvation = -4008.046298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78607 -40.83880 -39.45619 -38.61484 -36.03968 -34.65458 -33.44099 -32.30269 -32.03784 -31.29360 -30.44889 -29.33878 -26.89925 -25.80798 -25.20117 -23.94972 -23.53419 -23.14315 -21.94172 -20.95251 -20.05011 -19.43173 -18.32513 -17.69093 -17.48593 -17.08355 -16.85526 -16.66132 -16.40151 -15.99947 -15.81293 -15.54087 -15.34327 -15.09380 -14.74806 -14.43975 -14.27267 -14.19903 -13.96247 -13.85105 -13.63414 -13.44479 -13.10476 -12.95905 -12.93112 -12.89675 -12.59713 -12.58799 -12.46732 -12.25741 -12.10392 -12.00957 -11.91168 -11.69017 -11.57319 -11.52982 -10.95929 -10.91577 -10.53461 -10.01403 -9.70940 -9.69133 -9.01215 -7.93609 -5.22795 -0.12128 0.33057 1.49679 1.50345 1.60145 1.69490 1.88408 2.57721 2.73119 2.92676 3.31121 3.41675 3.52424 3.65759 3.68295 3.80425 3.90484 3.93465 3.98201 4.11682 4.14556 4.17331 4.21426 4.30751 4.31016 4.35640 4.36199 4.52403 4.54101 4.60936 4.70411 4.74539 4.79918 4.83848 4.88135 4.89751 4.97225 5.00394 5.02112 5.14758 5.17262 5.21539 5.25466 5.38017 5.39605 5.48361 5.52292 5.55781 5.89590 6.01709 6.27967 6.47575 7.03866 7.35228 8.08504 8.31915 9.30322 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002041 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.954700 B =13715.331806 C =13900.736226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.134 3.866 3 H 0.067 0.933 4 C 0.166 3.834 5 H 0.071 0.929 6 N -0.733 5.733 7 C -0.235 4.235 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.261 1.261 13 H -0.299 1.299 14 H -0.297 1.297 15 C -0.146 4.146 16 C 0.096 3.904 17 N -0.602 5.602 18 C 0.564 3.436 19 O -0.583 6.583 20 C -0.141 4.141 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.087 4.087 24 C -0.082 4.082 25 C -0.082 4.082 26 H 0.092 0.908 27 C -0.143 4.143 28 C 0.045 3.955 29 O -0.406 6.406 30 C 0.058 3.942 31 C -0.074 4.074 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.380 0.620 36 H 0.250 0.750 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.068 0.932 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.008 -6.339 -26.393 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.085 0.915 4 C 0.057 3.943 5 H 0.089 0.911 6 N -0.375 5.375 7 C -0.366 4.366 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.185 1.185 13 H -0.226 1.226 14 H -0.224 1.224 15 C -0.186 4.186 16 C -0.025 4.025 17 N -0.334 5.334 18 C 0.356 3.644 19 O -0.465 6.465 20 C -0.144 4.144 21 C -0.118 4.118 22 C -0.133 4.133 23 C -0.105 4.105 24 C -0.082 4.082 25 C -0.101 4.101 26 H 0.110 0.890 27 C -0.180 4.180 28 C -0.030 4.030 29 O -0.326 6.326 30 C -0.019 4.019 31 C -0.093 4.093 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.216 0.784 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.173 0.827 42 H 0.181 0.819 43 H 0.168 0.832 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.723 -6.007 -26.529 30.029 hybrid contribution -1.034 0.541 1.462 1.870 sum 11.689 -5.467 -25.067 28.193 Atomic orbital electron populations 1.21815 0.95812 1.01350 1.01267 1.21618 0.94306 0.95872 0.85244 0.91465 1.21389 0.92135 0.94228 0.86598 0.91144 1.42861 1.05681 1.85493 1.03506 1.19697 0.93352 1.38589 0.85005 0.89826 1.25575 0.95406 1.03893 1.02169 1.69834 1.00315 1.58853 1.33265 0.85066 0.78011 0.76423 0.80198 1.18520 1.22628 1.22414 1.23408 1.01569 0.98651 0.94998 1.22947 0.95203 0.88838 0.95519 1.48497 1.49898 1.30807 1.04156 1.18531 0.79257 0.84698 0.81946 1.90729 1.42932 1.28864 1.83930 1.19757 0.99554 1.01069 0.93995 1.22103 0.94382 0.94039 1.01261 1.21481 1.00936 0.98745 0.92089 1.21505 0.93520 0.97269 0.98242 1.19551 0.96667 0.97619 0.94384 1.21694 0.98570 0.97740 0.92080 0.88970 1.23405 0.99380 1.02464 0.92757 1.23568 0.98039 0.85369 0.96066 1.88391 1.86296 1.36179 1.21741 1.23284 1.01173 0.95345 0.82062 1.21086 0.99212 0.97472 0.91537 0.93386 0.92193 0.92776 0.78421 0.94167 0.92687 0.88781 0.88135 0.87868 0.82694 0.81898 0.83230 0.88685 0.89008 0.88057 0.91580 0.90287 0.91338 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 7.94 71.98 0.57 -5.15 16 2 C 0.13 4.78 3.47 45.35 0.16 4.94 16 3 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.17 6.16 3.45 46.18 0.16 6.32 16 5 H 0.07 2.52 8.12 -2.38 -0.02 2.50 16 6 N -0.73 -35.40 5.02 -317.30 -1.59 -36.99 16 7 C -0.23 -12.39 9.98 84.03 0.84 -11.56 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 10 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 11 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 14 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 15 C -0.15 -4.34 6.77 31.99 0.22 -4.12 16 16 C 0.10 2.17 5.02 86.86 0.44 2.60 16 17 N -0.60 -18.09 3.08 -791.39 -2.44 -20.53 16 18 C 0.56 18.04 7.40 86.79 0.64 18.68 16 19 O -0.58 -23.13 15.68 -3.89 -0.06 -23.19 16 20 C -0.14 -3.42 5.70 -20.09 -0.11 -3.53 16 21 C -0.10 -1.70 7.94 22.53 0.18 -1.52 16 22 C -0.11 -1.38 10.03 22.23 0.22 -1.16 16 23 C -0.09 -1.08 8.12 22.33 0.18 -0.90 16 24 C -0.08 -1.33 4.93 -19.90 -0.10 -1.43 16 25 C -0.08 -1.12 3.22 -10.28 -0.03 -1.15 16 26 H 0.09 1.31 7.95 -2.39 -0.02 1.29 16 27 C -0.14 -1.42 6.54 32.05 0.21 -1.21 16 28 C 0.05 0.49 7.78 72.65 0.56 1.06 16 29 O -0.41 -6.85 11.36 -148.98 -1.69 -8.54 16 30 C 0.06 0.84 7.31 72.45 0.53 1.37 16 31 C -0.07 -1.67 9.23 22.52 0.21 -1.46 16 32 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 33 H 0.06 2.61 6.73 -2.39 -0.02 2.59 16 34 H 0.05 2.16 6.86 -2.39 -0.02 2.15 16 35 H 0.38 19.98 4.94 -92.71 -0.46 19.52 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.10 1.87 6.15 -2.39 -0.01 1.85 16 40 H 0.10 1.70 7.29 -2.39 -0.02 1.68 16 41 H 0.16 2.13 4.56 -2.91 -0.01 2.12 16 42 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 43 H 0.15 1.17 7.28 -2.91 -0.02 1.15 16 44 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.09 0.76 6.80 -2.39 -0.02 0.75 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 1.06 7.04 -2.39 -0.02 1.04 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.12 2.90 7.80 -2.91 -0.02 2.87 16 Total: -1.00 -71.78 390.17 2.36 -69.42 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.50 Total: 33.49 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.34 Total: -2.14 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -3.75 Total: -116.15 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.75 Total: -31.73 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -71.78 2.36 -69.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074719685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.754 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds