Wall clock time and date at job start Wed Apr 1 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.87042 * 2 1 4 4 C 1.54316 * 109.88595 * 121.17675 * 2 1 3 5 5 H 1.08997 * 110.72381 * 259.97546 * 4 2 1 6 6 N 1.46507 * 110.72054 * 23.07237 * 4 2 1 7 7 C 1.36940 * 120.00169 * 205.00001 * 6 4 2 8 8 H 1.07998 * 119.99776 * 359.97438 * 7 6 4 9 9 C 1.38807 * 119.99736 * 179.97438 * 7 6 4 10 10 N 1.31624 * 119.99337 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00396 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47353 * 89.99753 * 11 9 7 13 13 H 1.48504 * 109.46985 * 209.99991 * 11 9 7 14 14 H 1.48504 * 109.46738 * 329.99663 * 11 9 7 15 15 C 1.55160 * 102.94268 * 141.61289 * 4 2 1 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 4 2 17 17 N 1.47026 * 109.88236 * 238.99013 * 2 1 3 18 18 C 1.34771 * 125.65100 * 61.37105 * 17 2 1 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 2 21 21 C 1.53003 * 109.46951 * 180.02562 * 20 18 17 22 22 H 1.09004 * 109.33620 * 54.67830 * 21 20 18 23 23 O 1.42727 * 109.33631 * 295.00103 * 21 20 18 24 24 C 1.43221 * 113.11044 * 187.98448 * 23 21 20 25 25 C 1.52982 * 108.47169 * 70.72621 * 24 23 21 26 26 C 1.50744 * 109.76465 * 310.83440 * 25 24 23 27 27 C 1.38590 * 118.76547 * 196.78000 * 26 25 24 28 28 C 1.38078 * 120.27845 * 180.14526 * 27 26 25 29 29 C 1.38266 * 119.85977 * 0.03828 * 28 27 26 30 30 C 1.38050 * 119.89433 * 359.92192 * 29 28 27 31 31 C 1.37911 * 121.35643 * 16.83833 * 26 25 24 32 32 H 1.09007 * 109.46732 * 179.56233 * 1 2 3 33 33 H 1.08995 * 109.47241 * 299.55336 * 1 2 3 34 34 H 1.08999 * 109.47140 * 59.56544 * 1 2 3 35 35 H 0.96994 * 119.99539 * 24.99816 * 6 4 2 36 36 H 0.97002 * 119.99148 * 180.02562 * 10 9 7 37 37 H 1.08991 * 111.00600 * 82.57442 * 15 4 2 38 38 H 1.09004 * 111.00084 * 206.38888 * 15 4 2 39 39 H 1.09001 * 110.36852 * 278.17238 * 16 15 4 40 40 H 1.08998 * 110.36449 * 155.84885 * 16 15 4 41 41 H 1.09000 * 109.46686 * 299.99326 * 20 18 17 42 42 H 1.08989 * 109.47272 * 60.00000 * 20 18 17 43 43 H 1.09005 * 109.63452 * 190.41362 * 24 23 21 44 44 H 1.08994 * 109.64142 * 311.03221 * 24 23 21 45 45 H 1.08997 * 109.42008 * 70.92096 * 25 24 23 46 46 H 1.08991 * 109.42091 * 190.80135 * 25 24 23 47 47 H 1.08005 * 119.86498 * 0.16683 * 27 26 25 48 48 H 1.07994 * 120.07176 * 180.02562 * 28 27 26 49 49 H 1.08001 * 120.04818 * 179.97438 * 29 28 27 50 50 H 1.07998 * 119.84543 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7512 1.2416 5 1 2.3530 -0.0489 2.0199 6 7 1.0457 -1.6850 1.7475 7 6 1.0603 -2.0618 3.0640 8 1 1.8160 -1.6709 3.7291 9 6 0.1037 -2.9461 3.5433 10 7 0.1175 -3.3078 4.8088 11 14 -1.2029 -3.6228 2.3926 12 1 -0.7125 -4.8788 1.7708 13 1 -2.4427 -3.9020 3.1610 14 1 -1.4925 -2.6252 1.3314 15 6 3.2877 -1.5151 0.6901 16 6 2.8146 -1.8782 -0.7396 17 7 2.0300 -0.7123 -1.1850 18 6 1.8037 -0.3609 -2.4663 19 8 1.1362 0.6200 -2.7173 20 6 2.3802 -1.1871 -3.5872 21 6 1.9775 -0.5755 -4.9307 22 1 2.2790 0.4718 -4.9553 23 8 0.5613 -0.6634 -5.0844 24 6 0.1127 -0.2806 -6.3896 25 6 0.5401 -1.3607 -7.3851 26 6 2.0003 -1.6821 -7.1930 27 6 2.6720 -2.3596 -8.1982 28 6 4.0090 -2.6725 -8.0537 29 6 4.6804 -2.3091 -6.9009 30 6 4.0122 -1.6335 -5.8995 31 6 2.6703 -1.3171 -6.0441 32 1 -0.3633 -1.0277 -0.0079 33 1 -0.3633 0.5069 0.8939 34 1 -0.3633 0.5206 -0.8860 35 1 0.3672 -2.0363 1.1499 36 1 -0.5507 -3.9261 5.1437 37 1 4.1654 -0.8697 0.6590 38 1 3.4857 -2.4124 1.2765 39 1 2.1887 -2.7704 -0.7169 40 1 3.6717 -2.0317 -1.3952 41 1 3.4670 -1.2013 -3.5062 42 1 1.9974 -2.2055 -3.5220 43 1 -0.9736 -0.1899 -6.3916 44 1 0.5634 0.6722 -6.6672 45 1 -0.0535 -2.2601 -7.2211 46 1 0.3797 -1.0009 -8.4014 47 1 2.1475 -2.6438 -9.0986 48 1 4.5293 -3.2002 -8.8393 49 1 5.7261 -2.5527 -6.7845 50 1 4.5375 -1.3496 -4.9996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075054393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:10 Heat of formation + Delta-G solvation = -31.316748 kcal Electronic energy + Delta-G solvation = -30784.466043 eV Core-core repulsion = 26776.998656 eV Total energy + Delta-G solvation = -4007.467387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82442 -39.84801 -37.93944 -37.29982 -34.11401 -33.96765 -32.52062 -31.71509 -30.91980 -30.28994 -29.49966 -28.31350 -25.41497 -24.72217 -24.05586 -23.18301 -22.68435 -21.68932 -20.33048 -19.66588 -18.57554 -17.92604 -17.59050 -16.81234 -16.42692 -16.38596 -15.85617 -15.50278 -14.97992 -14.64648 -14.58015 -14.34713 -13.98179 -13.79491 -13.70652 -13.44661 -13.34970 -13.04633 -12.85232 -12.52213 -12.49832 -12.43566 -12.29870 -12.06459 -11.78889 -11.59864 -11.53788 -11.22321 -11.12146 -11.02661 -10.84696 -10.80708 -10.68229 -10.28614 -10.10226 -9.79766 -9.59135 -9.48984 -9.08335 -8.98609 -8.90619 -8.35730 -7.33531 -5.82099 -3.18201 0.98260 1.03454 2.85089 3.16177 3.34735 3.38926 3.39313 3.43709 3.60581 4.27199 4.31837 4.47662 4.54982 4.59231 4.72412 4.78075 4.81979 4.95558 4.99181 5.04180 5.09221 5.15921 5.21848 5.23717 5.30545 5.33935 5.45326 5.51915 5.57192 5.60170 5.64346 5.66053 5.69975 5.75150 5.76744 5.81735 6.03021 6.10783 6.17687 6.23216 6.25425 6.31122 6.40223 6.53247 6.64765 6.65798 6.75597 6.85544 7.00812 7.80534 7.94134 8.37105 8.41277 9.14847 9.87330 10.06535 11.35873 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.002651 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.613572 B =10557.560829 C =10788.110494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.125 3.875 3 H 0.074 0.926 4 C 0.178 3.822 5 H 0.078 0.922 6 N -0.738 5.738 7 C -0.246 4.246 8 H 0.092 0.908 9 C 0.009 3.991 10 N -0.931 5.931 11 Si 0.878 3.122 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.275 1.275 15 C -0.158 4.158 16 C 0.102 3.898 17 N -0.613 5.613 18 C 0.529 3.471 19 O -0.533 6.533 20 C -0.129 4.129 21 C 0.149 3.851 22 H 0.079 0.921 23 O -0.354 6.354 24 C 0.060 3.940 25 C -0.117 4.117 26 C -0.070 4.070 27 C -0.119 4.119 28 C -0.118 4.118 29 C -0.122 4.122 30 C -0.110 4.110 31 C -0.113 4.113 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.365 0.635 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 3.556 -27.069 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.021 3.979 3 H 0.092 0.908 4 C 0.066 3.934 5 H 0.096 0.904 6 N -0.382 5.382 7 C -0.376 4.376 8 H 0.110 0.890 9 C -0.187 4.187 10 N -0.578 5.578 11 Si 0.708 3.292 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.201 1.201 15 C -0.199 4.199 16 C -0.021 4.021 17 N -0.348 5.348 18 C 0.317 3.683 19 O -0.410 6.410 20 C -0.169 4.169 21 C 0.091 3.909 22 H 0.097 0.903 23 O -0.272 6.272 24 C -0.017 4.017 25 C -0.155 4.155 26 C -0.070 4.070 27 C -0.137 4.137 28 C -0.136 4.136 29 C -0.140 4.140 30 C -0.128 4.128 31 C -0.113 4.113 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.200 0.800 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.046 4.009 -26.855 28.319 hybrid contribution -0.693 -0.837 -1.005 1.480 sum 7.354 3.172 -27.860 28.988 Atomic orbital electron populations 1.21978 0.94696 1.02280 1.02088 1.21998 0.95151 0.95946 0.84759 0.90804 1.21152 0.88593 0.91333 0.92313 0.90394 1.42893 1.32963 1.53236 1.09068 1.19063 1.12137 1.21731 0.84662 0.89002 1.24640 0.98718 0.99661 0.95704 1.69697 1.37357 1.37803 1.12969 0.86672 0.82549 0.79263 0.80711 1.21067 1.21624 1.20141 1.23487 0.99201 1.02603 0.94649 1.22323 0.94458 0.88723 0.96557 1.48693 1.52372 1.28709 1.04987 1.19964 0.80737 0.85353 0.82232 1.90686 1.39289 1.27846 1.83140 1.21781 1.02216 1.01297 0.91606 1.20515 0.81684 0.97979 0.90739 0.90313 1.88201 1.19958 1.88211 1.30874 1.22583 1.00434 0.95847 0.82813 1.21187 0.92610 1.01003 1.00658 1.19528 0.95659 0.98190 0.93642 1.21077 0.94778 0.99181 0.98708 1.21130 0.94618 0.99978 0.97885 1.21113 1.00020 0.98934 0.93909 1.21093 0.93641 0.98768 0.99325 1.20262 0.94809 1.00254 0.95998 0.92547 0.91338 0.92228 0.79958 0.92991 0.91616 0.89107 0.91433 0.91552 0.87594 0.88023 0.88261 0.92686 0.89591 0.89793 0.86012 0.85988 0.85816 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.50 37.16 0.32 -2.49 16 2 C 0.13 2.11 3.43 -66.96 -0.23 1.88 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.18 3.20 3.48 -66.09 -0.23 2.97 16 5 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 6 N -0.74 -16.49 4.36 -51.65 -0.23 -16.72 16 7 C -0.25 -6.60 10.44 -15.06 -0.16 -6.76 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 10 N -0.93 -28.58 13.97 55.49 0.78 -27.80 16 11 Si 0.88 21.86 27.74 -169.99 -4.71 17.14 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.56 6.41 56.52 0.36 -6.20 16 15 C -0.16 -2.38 6.78 -24.58 -0.17 -2.54 16 16 C 0.10 1.40 6.67 -2.53 -0.02 1.38 16 17 N -0.61 -9.39 3.07 -163.02 -0.50 -9.89 16 18 C 0.53 8.14 7.52 -10.98 -0.08 8.06 16 19 O -0.53 -9.86 14.43 -9.00 -0.13 -9.99 16 20 C -0.13 -1.51 4.12 -27.88 -0.11 -1.62 16 21 C 0.15 1.78 2.27 -27.90 -0.06 1.72 16 22 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 23 O -0.35 -4.85 9.66 -49.79 -0.48 -5.33 16 24 C 0.06 0.60 6.85 37.15 0.25 0.86 16 25 C -0.12 -0.99 6.01 -27.87 -0.17 -1.16 16 26 C -0.07 -0.68 5.78 -104.59 -0.60 -1.29 16 27 C -0.12 -1.00 9.67 -39.51 -0.38 -1.38 16 28 C -0.12 -0.92 10.05 -39.63 -0.40 -1.32 16 29 C -0.12 -0.97 10.05 -39.64 -0.40 -1.37 16 30 C -0.11 -0.98 9.08 -39.51 -0.36 -1.34 16 31 C -0.11 -1.18 5.46 -104.62 -0.57 -1.75 16 32 H 0.06 1.13 6.09 -51.93 -0.32 0.81 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.11 6.87 -51.93 -0.36 0.76 16 35 H 0.37 8.31 3.53 -40.82 -0.14 8.16 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.70 7.49 -51.93 -0.39 0.31 16 41 H 0.11 0.94 6.01 -51.93 -0.31 0.62 16 42 H 0.10 1.19 8.14 -51.94 -0.42 0.76 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 50 H 0.13 0.91 6.45 -52.49 -0.34 0.57 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -33.24 389.83 -10.65 -43.88 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.78 Total: 8.81 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.47 Total: -5.99 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.05 Total: -54.41 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.61 Total: -15.32 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.24 -10.65 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075054393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.565 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds