Wall clock time and date at job start Wed Apr 1 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.87042 * 2 1 4 4 C 1.54316 * 109.88595 * 121.17675 * 2 1 3 5 5 H 1.08997 * 110.72381 * 259.97546 * 4 2 1 6 6 N 1.46507 * 110.72054 * 23.07237 * 4 2 1 7 7 C 1.36940 * 120.00169 * 205.00001 * 6 4 2 8 8 H 1.07998 * 119.99776 * 359.97438 * 7 6 4 9 9 C 1.38807 * 119.99736 * 179.97438 * 7 6 4 10 10 N 1.31624 * 119.99337 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00396 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.47353 * 89.99753 * 11 9 7 13 13 H 1.48504 * 109.46985 * 209.99991 * 11 9 7 14 14 H 1.48504 * 109.46738 * 329.99663 * 11 9 7 15 15 C 1.55160 * 102.94268 * 141.61289 * 4 2 1 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 4 2 17 17 N 1.47026 * 109.88236 * 238.99013 * 2 1 3 18 18 C 1.34771 * 125.65100 * 61.37105 * 17 2 1 19 19 O 1.21278 * 120.00143 * 0.02562 * 18 17 2 20 20 C 1.50706 * 119.99931 * 180.02562 * 18 17 2 21 21 C 1.53003 * 109.46951 * 180.02562 * 20 18 17 22 22 H 1.09004 * 109.33620 * 54.67830 * 21 20 18 23 23 O 1.42727 * 109.33631 * 295.00103 * 21 20 18 24 24 C 1.43221 * 113.11044 * 187.98448 * 23 21 20 25 25 C 1.52982 * 108.47169 * 70.72621 * 24 23 21 26 26 C 1.50744 * 109.76465 * 310.83440 * 25 24 23 27 27 C 1.38590 * 118.76547 * 196.78000 * 26 25 24 28 28 C 1.38078 * 120.27845 * 180.14526 * 27 26 25 29 29 C 1.38266 * 119.85977 * 0.03828 * 28 27 26 30 30 C 1.38050 * 119.89433 * 359.92192 * 29 28 27 31 31 C 1.37911 * 121.35643 * 16.83833 * 26 25 24 32 32 H 1.09007 * 109.46732 * 179.56233 * 1 2 3 33 33 H 1.08995 * 109.47241 * 299.55336 * 1 2 3 34 34 H 1.08999 * 109.47140 * 59.56544 * 1 2 3 35 35 H 0.96994 * 119.99539 * 24.99816 * 6 4 2 36 36 H 0.97002 * 119.99148 * 180.02562 * 10 9 7 37 37 H 1.08991 * 111.00600 * 82.57442 * 15 4 2 38 38 H 1.09004 * 111.00084 * 206.38888 * 15 4 2 39 39 H 1.09001 * 110.36852 * 278.17238 * 16 15 4 40 40 H 1.08998 * 110.36449 * 155.84885 * 16 15 4 41 41 H 1.09000 * 109.46686 * 299.99326 * 20 18 17 42 42 H 1.08989 * 109.47272 * 60.00000 * 20 18 17 43 43 H 1.09005 * 109.63452 * 190.41362 * 24 23 21 44 44 H 1.08994 * 109.64142 * 311.03221 * 24 23 21 45 45 H 1.08997 * 109.42008 * 70.92096 * 25 24 23 46 46 H 1.08991 * 109.42091 * 190.80135 * 25 24 23 47 47 H 1.08005 * 119.86498 * 0.16683 * 27 26 25 48 48 H 1.07994 * 120.07176 * 180.02562 * 28 27 26 49 49 H 1.08001 * 120.04818 * 179.97438 * 29 28 27 50 50 H 1.07998 * 119.84543 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7512 1.2416 5 1 2.3530 -0.0489 2.0199 6 7 1.0457 -1.6850 1.7475 7 6 1.0603 -2.0618 3.0640 8 1 1.8160 -1.6709 3.7291 9 6 0.1037 -2.9461 3.5433 10 7 0.1175 -3.3078 4.8088 11 14 -1.2029 -3.6228 2.3926 12 1 -0.7125 -4.8788 1.7708 13 1 -2.4427 -3.9020 3.1610 14 1 -1.4925 -2.6252 1.3314 15 6 3.2877 -1.5151 0.6901 16 6 2.8146 -1.8782 -0.7396 17 7 2.0300 -0.7123 -1.1850 18 6 1.8037 -0.3609 -2.4663 19 8 1.1362 0.6200 -2.7173 20 6 2.3802 -1.1871 -3.5872 21 6 1.9775 -0.5755 -4.9307 22 1 2.2790 0.4718 -4.9553 23 8 0.5613 -0.6634 -5.0844 24 6 0.1127 -0.2806 -6.3896 25 6 0.5401 -1.3607 -7.3851 26 6 2.0003 -1.6821 -7.1930 27 6 2.6720 -2.3596 -8.1982 28 6 4.0090 -2.6725 -8.0537 29 6 4.6804 -2.3091 -6.9009 30 6 4.0122 -1.6335 -5.8995 31 6 2.6703 -1.3171 -6.0441 32 1 -0.3633 -1.0277 -0.0079 33 1 -0.3633 0.5069 0.8939 34 1 -0.3633 0.5206 -0.8860 35 1 0.3672 -2.0363 1.1499 36 1 -0.5507 -3.9261 5.1437 37 1 4.1654 -0.8697 0.6590 38 1 3.4857 -2.4124 1.2765 39 1 2.1887 -2.7704 -0.7169 40 1 3.6717 -2.0317 -1.3952 41 1 3.4670 -1.2013 -3.5062 42 1 1.9974 -2.2055 -3.5220 43 1 -0.9736 -0.1899 -6.3916 44 1 0.5634 0.6722 -6.6672 45 1 -0.0535 -2.2601 -7.2211 46 1 0.3797 -1.0009 -8.4014 47 1 2.1475 -2.6438 -9.0986 48 1 4.5293 -3.2002 -8.8393 49 1 5.7261 -2.5527 -6.7845 50 1 4.5375 -1.3496 -4.9996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075054393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:09 Heat of formation + Delta-G solvation = -50.354787 kcal Electronic energy + Delta-G solvation = -30785.291594 eV Core-core repulsion = 26776.998656 eV Total energy + Delta-G solvation = -4008.292938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68746 -40.96512 -39.02090 -38.30653 -35.82533 -34.79933 -33.60852 -33.15332 -32.27469 -31.38626 -30.63455 -29.23973 -26.86554 -25.65452 -25.02565 -24.73093 -23.69979 -22.58488 -21.13670 -20.95690 -19.96014 -19.70598 -18.48520 -17.82320 -17.62184 -17.22828 -16.77748 -16.43446 -16.21614 -16.09168 -15.70807 -15.32318 -15.25035 -14.98869 -14.77191 -14.55842 -14.36965 -14.18505 -14.13747 -13.88533 -13.50992 -13.41589 -13.26273 -13.22541 -13.00366 -12.93484 -12.64343 -12.53572 -12.41822 -12.35591 -12.33709 -11.96082 -11.87727 -11.71085 -11.56815 -11.53606 -10.97912 -10.78992 -10.56198 -9.71034 -9.61819 -9.54671 -9.30663 -8.01469 -5.33344 0.35352 0.44095 1.35878 1.37416 1.43667 1.67612 2.00198 2.46824 2.72069 2.85473 3.27966 3.39411 3.56024 3.64661 3.68416 3.80802 3.81458 3.91219 4.02984 4.11977 4.18838 4.21753 4.27797 4.28702 4.30389 4.37057 4.43162 4.55389 4.58634 4.61087 4.66328 4.72819 4.76592 4.81473 4.87580 4.92955 4.96063 5.04889 5.07862 5.16231 5.22061 5.26238 5.38072 5.43861 5.51161 5.60193 5.62750 5.81060 6.07420 6.19332 6.23012 6.61530 7.08287 7.21710 7.84527 8.02323 9.19926 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.002651 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.613572 B =10557.560829 C =10788.110494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.131 3.869 3 H 0.083 0.917 4 C 0.166 3.834 5 H 0.075 0.925 6 N -0.741 5.741 7 C -0.219 4.219 8 H 0.067 0.933 9 C -0.057 4.057 10 N -0.981 5.981 11 Si 0.938 3.062 12 H -0.278 1.278 13 H -0.298 1.298 14 H -0.262 1.262 15 C -0.147 4.147 16 C 0.104 3.896 17 N -0.613 5.613 18 C 0.525 3.475 19 O -0.569 6.569 20 C -0.120 4.120 21 C 0.151 3.849 22 H 0.064 0.936 23 O -0.387 6.387 24 C 0.053 3.947 25 C -0.112 4.112 26 C -0.089 4.089 27 C -0.127 4.127 28 C -0.121 4.121 29 C -0.127 4.127 30 C -0.117 4.117 31 C -0.131 4.131 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.365 0.635 36 H 0.256 0.744 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.140 0.860 48 H 0.145 0.855 49 H 0.146 0.854 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.368 2.972 -30.211 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.101 0.899 4 C 0.057 3.943 5 H 0.093 0.907 6 N -0.385 5.385 7 C -0.350 4.350 8 H 0.085 0.915 9 C -0.248 4.248 10 N -0.632 5.632 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.225 1.225 14 H -0.187 1.187 15 C -0.187 4.187 16 C -0.018 4.018 17 N -0.347 5.347 18 C 0.315 3.685 19 O -0.448 6.448 20 C -0.159 4.159 21 C 0.093 3.907 22 H 0.082 0.918 23 O -0.306 6.306 24 C -0.023 4.023 25 C -0.148 4.148 26 C -0.089 4.089 27 C -0.144 4.144 28 C -0.139 4.139 29 C -0.144 4.144 30 C -0.135 4.135 31 C -0.131 4.131 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.124 0.876 47 H 0.158 0.842 48 H 0.163 0.837 49 H 0.164 0.836 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.928 3.445 -30.056 31.840 hybrid contribution -1.183 -0.543 -0.071 1.304 sum 8.745 2.902 -30.126 31.504 Atomic orbital electron populations 1.21875 0.96085 1.00834 1.01468 1.21809 0.93955 0.96487 0.85092 0.89856 1.21382 0.89004 0.91075 0.92833 0.90741 1.42868 1.34246 1.53985 1.07406 1.19041 1.10195 1.19693 0.86050 0.91462 1.25298 1.01385 1.01148 0.97011 1.69851 1.38720 1.39555 1.15030 0.85677 0.79619 0.78990 0.78983 1.20383 1.22541 1.18748 1.23340 0.98469 1.01922 0.94968 1.22426 0.95473 0.87449 0.96450 1.48738 1.52413 1.28927 1.04620 1.20639 0.80036 0.85114 0.82675 1.90671 1.40890 1.29640 1.83637 1.21827 1.03964 1.00300 0.89845 1.20469 0.81178 0.97539 0.91553 0.91794 1.88140 1.21158 1.88512 1.32816 1.22763 1.00900 0.96519 0.82135 1.21153 0.92171 1.00316 1.01207 1.19768 0.96261 0.98821 0.94029 1.21336 0.95301 0.98813 0.98986 1.21496 0.94526 0.99405 0.98438 1.21442 1.01132 0.98263 0.93596 1.21313 0.93111 0.98741 1.00348 1.20217 0.95606 1.01412 0.95913 0.94233 0.91948 0.92829 0.80016 0.93470 0.88650 0.90502 0.92491 0.87176 0.84260 0.87690 0.87569 0.92702 0.89741 0.87635 0.84230 0.83724 0.83602 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 8.50 71.98 0.61 -4.66 16 2 C 0.13 4.24 3.43 45.34 0.16 4.40 16 3 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 4 C 0.17 5.80 3.48 46.18 0.16 5.96 16 5 H 0.07 2.65 8.09 -2.39 -0.02 2.64 16 6 N -0.74 -32.74 4.36 -317.33 -1.38 -34.13 16 7 C -0.22 -11.85 10.44 84.03 0.88 -10.97 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 10 N -0.98 -61.76 13.97 21.65 0.30 -61.45 16 11 Si 0.94 45.69 27.74 68.60 1.90 47.59 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 14 H -0.26 -12.00 6.41 99.48 0.64 -11.37 16 15 C -0.15 -4.02 6.78 31.99 0.22 -3.80 16 16 C 0.10 2.50 6.67 86.86 0.58 3.08 16 17 N -0.61 -17.45 3.07 -788.05 -2.42 -19.86 16 18 C 0.53 15.33 7.52 87.66 0.66 15.98 16 19 O -0.57 -20.85 14.43 10.90 0.16 -20.69 16 20 C -0.12 -2.53 4.12 29.85 0.12 -2.41 16 21 C 0.15 3.45 2.27 29.84 0.07 3.52 16 22 H 0.06 1.59 7.94 -2.38 -0.02 1.57 16 23 O -0.39 -10.54 9.66 -135.06 -1.30 -11.84 16 24 C 0.05 1.05 6.85 71.98 0.49 1.54 16 25 C -0.11 -1.73 6.01 29.86 0.18 -1.55 16 26 C -0.09 -1.58 5.78 -19.84 -0.11 -1.69 16 27 C -0.13 -1.79 9.67 22.32 0.22 -1.57 16 28 C -0.12 -1.49 10.05 22.24 0.22 -1.27 16 29 C -0.13 -1.59 10.05 22.23 0.22 -1.37 16 30 C -0.12 -1.76 9.08 22.32 0.20 -1.56 16 31 C -0.13 -2.51 5.46 -19.86 -0.11 -2.61 16 32 H 0.04 1.56 6.09 -2.38 -0.01 1.54 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 2.01 6.87 -2.39 -0.02 1.99 16 35 H 0.36 16.28 3.53 -92.71 -0.33 15.95 16 36 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 1.75 7.49 -2.39 -0.02 1.73 16 41 H 0.14 1.91 6.01 -2.39 -0.01 1.90 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.11 1.82 8.14 -2.38 -0.02 1.81 16 44 H 0.05 1.04 8.07 -2.39 -0.02 1.02 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 48 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 49 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 50 H 0.14 1.53 6.45 -2.91 -0.02 1.51 16 Total: -1.00 -73.99 389.83 3.03 -70.96 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.55 Total: 31.22 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.23 Total: -1.79 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -3.50 Total: -115.44 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.15 Total: -32.53 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -73.99 3.03 -70.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075054393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.604 kcal (2) G-P(sol) polarization free energy of solvation -73.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds