Wall clock time and date at job start Wed Apr 1 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.87440 * 2 1 4 4 C 1.54324 * 109.87985 * 121.17850 * 2 1 3 5 5 H 1.09000 * 110.71453 * 215.58177 * 4 2 1 6 6 N 1.46497 * 110.72289 * 338.85915 * 4 2 1 7 7 C 1.36939 * 119.99691 * 205.00160 * 6 4 2 8 8 H 1.07999 * 120.00359 * 0.02562 * 7 6 4 9 9 C 1.38822 * 119.99656 * 179.97438 * 7 6 4 10 10 N 1.31616 * 119.99639 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99827 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47296 * 90.00296 * 11 9 7 13 13 H 1.48504 * 109.46998 * 209.99860 * 11 9 7 14 14 H 1.48503 * 109.47386 * 329.99617 * 11 9 7 15 15 C 1.55158 * 102.94431 * 97.22321 * 4 2 1 16 16 C 1.54918 * 101.58112 * 35.49964 * 15 4 2 17 17 N 1.47018 * 109.87796 * 238.98349 * 2 1 3 18 18 C 1.34783 * 125.65139 * 59.49262 * 17 2 1 19 19 O 1.21277 * 119.99538 * 359.97438 * 18 17 2 20 20 C 1.50696 * 120.00226 * 179.97438 * 18 17 2 21 21 C 1.53000 * 109.46841 * 179.97438 * 20 18 17 22 22 H 1.08991 * 109.33752 * 304.99671 * 21 20 18 23 23 O 1.42733 * 109.34138 * 64.67820 * 21 20 18 24 24 C 1.43216 * 113.10979 * 172.01207 * 23 21 20 25 25 C 1.52969 * 108.47679 * 289.26872 * 24 23 21 26 26 C 1.50746 * 109.76260 * 49.16966 * 25 24 23 27 27 C 1.38602 * 118.76511 * 163.22246 * 26 25 24 28 28 C 1.38067 * 120.27673 * 179.85261 * 27 26 25 29 29 C 1.38270 * 119.86355 * 359.96147 * 28 27 26 30 30 C 1.38050 * 119.89359 * 0.07411 * 29 28 27 31 31 C 1.37674 * 121.29249 * 343.02231 * 26 25 24 32 32 H 1.08994 * 109.47357 * 179.56338 * 1 2 3 33 33 H 1.08998 * 109.46865 * 299.56099 * 1 2 3 34 34 H 1.08994 * 109.46919 * 59.55924 * 1 2 3 35 35 H 0.97002 * 119.99955 * 24.99805 * 6 4 2 36 36 H 0.97001 * 119.99608 * 180.02562 * 10 9 7 37 37 H 1.08993 * 111.00468 * 277.42926 * 15 4 2 38 38 H 1.08996 * 111.00515 * 153.56990 * 15 4 2 39 39 H 1.09001 * 110.36791 * 204.15608 * 16 15 4 40 40 H 1.08994 * 110.36708 * 81.82501 * 16 15 4 41 41 H 1.09005 * 109.47162 * 299.99402 * 20 18 17 42 42 H 1.08995 * 109.47465 * 59.99777 * 20 18 17 43 43 H 1.09000 * 109.63980 * 48.97120 * 24 23 21 44 44 H 1.09004 * 109.63115 * 169.37500 * 24 23 21 45 45 H 1.08992 * 109.42317 * 169.25709 * 25 24 23 46 46 H 1.09004 * 109.42297 * 289.07987 * 25 24 23 47 47 H 1.07995 * 119.86223 * 359.82984 * 27 26 25 48 48 H 1.07992 * 120.07228 * 179.97438 * 28 27 26 49 49 H 1.07996 * 120.04915 * 180.09566 * 29 28 27 50 50 H 1.07996 * 119.84549 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7513 1.2416 5 1 2.9657 -0.2855 1.6177 6 7 1.0293 -0.8059 2.2864 7 6 1.3955 -0.9439 3.5986 8 1 2.4403 -1.0122 3.8635 9 6 0.4237 -0.9951 4.5887 10 7 0.7756 -1.1273 5.8500 11 14 -1.3833 -0.8764 4.1306 12 1 -1.9209 -2.2377 3.8797 13 1 -2.1358 -0.2446 5.2442 14 1 -1.5300 -0.0523 2.9039 15 6 2.3518 -2.1705 0.6893 16 6 2.8568 -1.8488 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.7742 -0.3818 -2.4663 19 8 1.0763 0.5778 -2.7172 20 6 2.3554 -1.2045 -3.5871 21 6 1.9142 -0.6200 -4.9305 22 1 0.8266 -0.5552 -4.9561 23 8 2.4694 0.6861 -5.0829 24 6 2.2593 1.2374 -6.3879 25 6 3.1360 0.4752 -7.3831 26 6 2.9521 -1.0087 -7.1922 27 6 3.3680 -1.8672 -8.1978 28 6 3.2172 -3.2321 -8.0544 29 6 2.6497 -3.7448 -6.9025 30 6 2.2345 -2.8904 -5.9008 31 6 2.3870 -1.5174 -6.0445 32 1 -0.3634 -1.0276 -0.0078 33 1 -0.3633 0.5070 0.8939 34 1 -0.3633 0.5206 -0.8860 35 1 0.0909 -0.7442 2.0485 36 1 0.0966 -1.1634 6.5417 37 1 1.4452 -2.7746 0.6564 38 1 3.1270 -2.6637 1.2758 39 1 2.7087 -2.7061 -1.3962 40 1 3.9091 -1.5658 -0.7151 41 1 3.4435 -1.1885 -3.5233 42 1 2.0017 -2.2322 -3.5048 43 1 1.2109 1.1303 -6.6664 44 1 2.5323 2.2927 -6.3880 45 1 2.8519 0.7479 -8.3994 46 1 4.1817 0.7350 -7.2180 47 1 3.8115 -1.4668 -9.0974 48 1 3.5420 -3.8979 -8.8401 49 1 2.5317 -4.8121 -6.7865 50 1 1.7917 -3.2917 -5.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075054394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:12 Heat of formation + Delta-G solvation = -49.732128 kcal Electronic energy + Delta-G solvation = -30472.495650 eV Core-core repulsion = 26464.229712 eV Total energy + Delta-G solvation = -4008.265937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68519 -40.96358 -39.01950 -38.29548 -36.01729 -34.78411 -33.68308 -33.15944 -32.14496 -31.42591 -30.61982 -29.23176 -26.92200 -25.73782 -24.87417 -24.63146 -23.76935 -22.66200 -21.05854 -20.91720 -20.01996 -19.79630 -18.47404 -17.95479 -17.23870 -17.19061 -16.90590 -16.42242 -16.38529 -16.06296 -15.82095 -15.46382 -15.29204 -14.88772 -14.77003 -14.57508 -14.40300 -14.10895 -13.99132 -13.65690 -13.58994 -13.38859 -13.32332 -13.15760 -13.04021 -12.97040 -12.79749 -12.64806 -12.57742 -12.37525 -12.24471 -11.91868 -11.86601 -11.72201 -11.54943 -11.52867 -10.97454 -10.78407 -10.55116 -9.69457 -9.63349 -9.54485 -9.31837 -8.02390 -5.35654 0.36419 0.44924 1.36778 1.38123 1.45042 1.68944 1.94888 2.46908 2.72689 2.86366 3.26511 3.39316 3.56753 3.65695 3.67583 3.82052 3.83644 3.91858 4.00401 4.13911 4.14446 4.22936 4.29411 4.31272 4.34665 4.35838 4.42794 4.51627 4.60527 4.61624 4.62368 4.67424 4.77747 4.82419 4.84413 4.89385 4.97632 5.03295 5.08764 5.14847 5.17612 5.25846 5.32446 5.47966 5.52041 5.61349 5.63875 5.78073 6.08264 6.19730 6.21642 6.61142 7.06562 7.21983 7.82110 8.00582 9.18673 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002310 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.722253 B =12120.546695 C =12608.991752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 H 0.061 0.939 4 C 0.169 3.831 5 H 0.067 0.933 6 N -0.745 5.745 7 C -0.226 4.226 8 H 0.065 0.935 9 C -0.059 4.059 10 N -0.980 5.980 11 Si 0.941 3.059 12 H -0.277 1.277 13 H -0.297 1.297 14 H -0.256 1.256 15 C -0.145 4.145 16 C 0.104 3.896 17 N -0.612 5.612 18 C 0.525 3.475 19 O -0.571 6.571 20 C -0.118 4.118 21 C 0.150 3.850 22 H 0.059 0.941 23 O -0.385 6.385 24 C 0.053 3.947 25 C -0.111 4.111 26 C -0.087 4.087 27 C -0.126 4.126 28 C -0.120 4.120 29 C -0.127 4.127 30 C -0.118 4.118 31 C -0.130 4.130 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.369 0.631 36 H 0.257 0.743 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.136 0.864 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.141 0.859 48 H 0.145 0.855 49 H 0.145 0.855 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.466 -5.023 -33.544 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.027 3.973 3 H 0.079 0.921 4 C 0.059 3.941 5 H 0.085 0.915 6 N -0.390 5.390 7 C -0.357 4.357 8 H 0.083 0.917 9 C -0.251 4.251 10 N -0.630 5.630 11 Si 0.769 3.231 12 H -0.203 1.203 13 H -0.224 1.224 14 H -0.181 1.181 15 C -0.186 4.186 16 C -0.018 4.018 17 N -0.346 5.346 18 C 0.316 3.684 19 O -0.450 6.450 20 C -0.157 4.157 21 C 0.092 3.908 22 H 0.077 0.923 23 O -0.304 6.304 24 C -0.024 4.024 25 C -0.148 4.148 26 C -0.087 4.087 27 C -0.143 4.143 28 C -0.138 4.138 29 C -0.145 4.145 30 C -0.136 4.136 31 C -0.131 4.131 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.206 0.794 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.133 0.867 42 H 0.154 0.846 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.106 0.894 47 H 0.158 0.842 48 H 0.162 0.838 49 H 0.162 0.838 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.313 -4.400 -33.419 34.294 hybrid contribution -1.369 0.222 0.495 1.472 sum 4.944 -4.178 -32.925 33.555 Atomic orbital electron populations 1.21963 0.95737 1.01892 1.01652 1.21564 0.94440 0.95781 0.85496 0.92068 1.21344 0.91655 0.94782 0.86282 0.91468 1.42942 1.04626 1.88898 1.02543 1.19048 0.93607 1.40083 0.82912 0.91689 1.25381 1.01785 1.02929 0.95021 1.69856 1.33773 1.59314 1.00105 0.85641 0.81532 0.78358 0.77612 1.20266 1.22358 1.18075 1.23344 1.01929 0.98119 0.95173 1.22540 0.95136 0.88723 0.95426 1.48641 1.50716 1.30971 1.04320 1.20713 0.80203 0.84913 0.82617 1.90678 1.40319 1.30365 1.83643 1.21813 1.04013 1.00408 0.89458 1.20462 0.96510 0.82110 0.91727 0.92279 1.88127 1.78861 1.30612 1.32773 1.22760 0.98791 0.98610 0.82203 1.21147 1.01767 0.90732 1.01129 1.19702 0.98659 0.96433 0.93914 1.21335 1.00343 0.93678 0.98990 1.21489 0.98541 0.95433 0.98364 1.21433 0.98546 1.00844 0.93666 1.21374 1.00009 0.91909 1.00311 1.20198 1.01719 0.95167 0.95976 0.92383 0.92463 0.92109 0.79432 0.93387 0.91440 0.89634 0.87518 0.89432 0.86683 0.84609 0.93075 0.87388 0.87747 0.89400 0.84156 0.83766 0.83765 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 7.93 71.98 0.57 -4.81 16 2 C 0.13 4.41 3.48 45.34 0.16 4.57 16 3 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.17 6.08 3.48 46.18 0.16 6.24 16 5 H 0.07 2.51 8.09 -2.39 -0.02 2.49 16 6 N -0.75 -33.65 4.74 -317.32 -1.51 -35.15 16 7 C -0.23 -12.42 10.44 84.04 0.88 -11.54 16 8 H 0.07 3.87 8.06 -2.91 -0.02 3.84 16 9 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 10 N -0.98 -61.96 13.97 21.65 0.30 -61.66 16 11 Si 0.94 45.29 27.74 68.60 1.90 47.19 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 14 H -0.26 -11.33 6.48 99.48 0.64 -10.69 16 15 C -0.15 -4.10 6.77 31.99 0.22 -3.88 16 16 C 0.10 2.14 6.69 86.86 0.58 2.72 16 17 N -0.61 -16.67 3.08 -788.04 -2.43 -19.10 16 18 C 0.53 14.73 7.51 87.65 0.66 15.39 16 19 O -0.57 -20.74 14.29 11.20 0.16 -20.58 16 20 C -0.12 -2.27 4.11 29.85 0.12 -2.14 16 21 C 0.15 3.27 2.28 29.83 0.07 3.34 16 22 H 0.06 1.47 7.95 -2.39 -0.02 1.45 16 23 O -0.38 -9.78 9.64 -134.76 -1.30 -11.08 16 24 C 0.05 0.97 6.85 71.97 0.49 1.46 16 25 C -0.11 -1.55 6.00 29.85 0.18 -1.37 16 26 C -0.09 -1.43 5.77 -19.90 -0.11 -1.54 16 27 C -0.13 -1.62 9.67 22.32 0.22 -1.41 16 28 C -0.12 -1.38 10.05 22.24 0.22 -1.15 16 29 C -0.13 -1.52 10.05 22.23 0.22 -1.30 16 30 C -0.12 -1.70 9.09 22.38 0.20 -1.49 16 31 C -0.13 -2.34 5.46 -19.86 -0.11 -2.45 16 32 H 0.06 1.95 8.01 -2.39 -0.02 1.93 16 33 H 0.06 2.15 6.78 -2.39 -0.02 2.13 16 34 H 0.06 2.17 6.74 -2.39 -0.02 2.15 16 35 H 0.37 16.39 2.92 -92.71 -0.27 16.12 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.11 1.48 7.48 -2.39 -0.02 1.46 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.14 1.76 6.01 -2.39 -0.01 1.74 16 43 H 0.05 0.93 8.07 -2.39 -0.02 0.92 16 44 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 48 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 49 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 50 H 0.14 1.49 6.45 -2.91 -0.02 1.47 16 Total: -1.00 -75.08 389.46 2.94 -72.15 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.61 Total: 30.59 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 5.19 Total: -2.37 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -3.63 Total: -115.91 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.14 Total: -31.66 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.19 kcal Total: -75.08 2.94 -72.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075054394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.415 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds