Wall clock time and date at job start Wed Apr 1 2020 03:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 116.99703 * 2 1 4 4 C 1.38753 * 120.05617 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94416 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05344 * 359.74254 * 5 4 3 7 7 C 1.38245 * 120.11007 * 0.51433 * 6 5 4 8 8 C 1.50703 * 119.96748 * 179.76534 * 7 6 5 9 9 H 1.09000 * 109.47104 * 179.72224 * 8 7 6 10 10 C 1.52998 * 109.47138 * 299.72273 * 8 7 6 11 11 C 1.50702 * 109.47021 * 59.72461 * 8 7 6 12 12 O 1.21278 * 120.00182 * 345.33770 * 11 8 7 13 13 N 1.34775 * 120.00041 * 165.34566 * 11 8 7 14 14 C 1.47341 * 125.52759 * 175.40350 * 13 11 8 15 15 C 1.54951 * 104.90408 * 156.74127 * 14 13 11 16 16 C 1.54786 * 101.45133 * 37.25851 * 15 14 13 17 17 H 1.08991 * 112.84564 * 86.24029 * 16 15 14 18 18 C 1.53526 * 109.68162 * 212.92531 * 16 15 14 19 19 N 1.46648 * 107.04968 * 84.82861 * 18 16 15 20 20 C 1.36936 * 125.28802 * 197.39801 * 19 18 16 21 21 H 1.07996 * 120.00134 * 7.06041 * 20 19 18 22 22 C 1.38813 * 120.00044 * 187.05953 * 20 19 18 23 23 N 1.31617 * 120.00157 * 6.67355 * 22 20 19 24 24 Si 1.86799 * 120.00046 * 186.67800 * 22 20 19 25 25 H 1.48496 * 109.47435 * 84.97286 * 24 22 20 26 26 H 1.48504 * 109.47291 * 204.97514 * 24 22 20 27 27 H 1.48502 * 109.46958 * 324.97147 * 24 22 20 28 28 C 1.46500 * 109.42559 * 17.38461 * 19 18 16 29 29 C 1.48511 * 125.37538 * 356.09656 * 13 11 8 30 30 H 1.08997 * 112.73883 * 56.89387 * 29 13 11 31 31 C 1.38165 * 120.05689 * 359.48630 * 7 6 5 32 32 H 1.09004 * 109.46577 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47295 * 299.99735 * 1 2 3 34 34 H 1.09003 * 109.47205 * 60.00317 * 1 2 3 35 35 H 1.07998 * 120.02762 * 359.95389 * 4 3 2 36 36 H 1.07994 * 119.97039 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.93907 * 180.27791 * 6 5 4 38 38 H 1.09000 * 109.47338 * 53.21018 * 10 8 7 39 39 H 1.09003 * 109.47057 * 173.21547 * 10 8 7 40 40 H 1.09003 * 109.46972 * 293.21045 * 10 8 7 41 41 H 1.09000 * 110.35039 * 37.88468 * 14 13 11 42 42 H 1.08997 * 110.44702 * 275.64577 * 14 13 11 43 43 H 1.09003 * 111.02256 * 279.21378 * 15 14 13 44 44 H 1.09003 * 111.06295 * 155.31870 * 15 14 13 45 45 H 1.08997 * 109.91618 * 204.17773 * 18 16 15 46 46 H 1.09004 * 109.91758 * 325.47836 * 18 16 15 47 47 H 0.96996 * 120.00597 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.71135 * 238.31382 * 28 19 18 49 49 H 1.08999 * 109.71784 * 117.75992 * 28 19 18 50 50 H 1.07995 * 120.02277 * 180.27758 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0064 7 6 4.0559 2.5172 0.0006 8 6 5.5607 2.5984 0.0011 9 1 5.9789 1.5918 0.0010 10 6 6.0315 3.3464 -1.2477 11 6 6.0236 3.3344 1.2320 12 8 5.2317 3.9779 1.8875 13 7 7.3176 3.2777 1.6043 14 6 7.9198 4.0224 2.7240 15 6 9.1796 3.2081 3.1125 16 6 9.6800 2.7361 1.7259 17 1 10.3261 3.4659 1.2382 18 6 10.3356 1.3539 1.8559 19 7 9.2608 0.3592 1.7778 20 6 9.3604 -0.9461 2.1794 21 1 10.2455 -1.2861 2.6963 22 6 8.3235 -1.8325 1.9222 23 7 7.3043 -1.4553 1.1797 24 14 8.3745 -3.5604 2.6299 25 1 7.8301 -3.5458 4.0114 26 1 7.5555 -4.4660 1.7847 27 1 9.7786 -4.0432 2.6562 28 6 8.0640 0.9791 1.2037 29 6 8.3683 2.4642 0.9410 30 1 8.4713 2.6930 -0.1197 31 6 3.4310 1.2849 0.0000 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 0.2127 2.3203 0.0002 36 1 1.3338 4.5113 0.0019 37 1 3.7920 4.6382 0.0114 38 1 5.5199 4.3069 -1.3105 39 1 7.1074 3.5109 -1.1887 40 1 5.8027 2.7543 -2.1338 41 1 7.2262 4.0712 3.5634 42 1 8.2006 5.0265 2.4063 43 1 8.9171 2.3590 3.7436 44 1 9.9202 3.8415 3.6009 45 1 11.0433 1.2006 1.0413 46 1 10.8466 1.2740 2.8154 47 1 6.5795 -2.0745 1.0002 48 1 7.2331 0.8922 1.9038 49 1 7.8075 0.4850 0.2666 50 1 4.0207 0.3801 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076610474.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:04 Heat of formation + Delta-G solvation = -30.573482 kcal Electronic energy + Delta-G solvation = -31583.437557 eV Core-core repulsion = 27576.002401 eV Total energy + Delta-G solvation = -4007.435156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81794 -40.99099 -39.69457 -38.31297 -36.42746 -35.03779 -33.91556 -32.39862 -31.67097 -30.36465 -29.95215 -28.32674 -28.15683 -26.41429 -25.86782 -23.86180 -23.51405 -22.42845 -21.87356 -21.12989 -20.05679 -18.97219 -18.57101 -18.01500 -17.43203 -17.11909 -16.80549 -16.65409 -16.37574 -16.22431 -15.81740 -15.43694 -15.29034 -15.17451 -14.59057 -14.47872 -14.34725 -14.20786 -13.74402 -13.61395 -13.42763 -13.32061 -13.17018 -13.08859 -12.91246 -12.87310 -12.73935 -12.61364 -12.36568 -12.29505 -12.14718 -11.91908 -11.87472 -11.80807 -11.66920 -11.47275 -11.44092 -10.76811 -10.70816 -9.82239 -9.65038 -9.12943 -8.84922 -7.83533 -5.20960 0.30367 0.50698 1.43471 1.45351 1.53199 1.59844 1.98126 2.38108 2.48714 2.79912 3.32290 3.35400 3.51137 3.59316 3.76161 3.86563 3.94079 4.00165 4.13483 4.15730 4.22286 4.30197 4.31010 4.35397 4.37473 4.42102 4.45821 4.56669 4.59996 4.66083 4.68921 4.79281 4.83724 4.84385 4.93106 4.96627 5.03401 5.11530 5.14853 5.19217 5.27928 5.31694 5.46576 5.47938 5.51434 5.55260 5.67178 5.73516 5.83238 6.21859 6.47395 6.51299 7.10070 7.14788 7.80842 8.40738 9.23208 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.004407 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.960661 B = 6352.297208 C = 8801.321357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.111 3.889 4 C -0.205 4.205 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.038 4.038 8 C -0.074 4.074 9 H 0.088 0.912 10 C -0.128 4.128 11 C 0.538 3.462 12 O -0.574 6.574 13 N -0.609 5.609 14 C 0.107 3.893 15 C -0.113 4.113 16 C -0.094 4.094 17 H 0.139 0.861 18 C 0.136 3.864 19 N -0.620 5.620 20 C -0.241 4.241 21 H 0.084 0.916 22 C -0.061 4.061 23 N -0.942 5.942 24 Si 0.969 3.031 25 H -0.293 1.293 26 H -0.297 1.297 27 H -0.264 1.264 28 C 0.188 3.812 29 C 0.112 3.888 30 H 0.113 0.887 31 C -0.170 4.170 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.120 0.880 45 H 0.030 0.970 46 H 0.045 0.955 47 H 0.243 0.757 48 H -0.011 1.011 49 H 0.027 0.973 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 13.764 -4.972 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.260 6.260 3 C 0.066 3.934 4 C -0.224 4.224 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.038 4.038 8 C -0.095 4.095 9 H 0.107 0.893 10 C -0.185 4.185 11 C 0.327 3.673 12 O -0.454 6.454 13 N -0.342 5.342 14 C -0.015 4.015 15 C -0.151 4.151 16 C -0.114 4.114 17 H 0.157 0.843 18 C 0.011 3.989 19 N -0.347 5.347 20 C -0.370 4.370 21 H 0.101 0.899 22 C -0.254 4.254 23 N -0.590 5.590 24 Si 0.798 3.202 25 H -0.220 1.220 26 H -0.224 1.224 27 H -0.189 1.189 28 C 0.061 3.939 29 C 0.008 3.992 30 H 0.131 0.869 31 C -0.189 4.189 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.138 0.862 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.007 0.993 49 H 0.046 0.954 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.388 13.729 -4.646 15.840 hybrid contribution -0.461 -1.772 0.622 1.934 sum -6.849 11.957 -4.025 14.356 Atomic orbital electron populations 1.23350 0.76291 1.05437 1.02467 1.86072 1.23768 1.27200 1.88912 1.19052 0.91781 0.85226 0.97382 1.21490 1.01099 0.91482 1.08285 1.21266 0.94036 0.98058 0.96763 1.20981 0.94267 0.97548 1.01623 1.19221 0.93812 0.92699 0.98080 1.20298 0.92811 1.01368 0.95002 0.89342 1.21742 1.02108 1.00394 0.94260 1.20278 0.80575 0.80325 0.86074 1.90621 1.53228 1.45282 1.56249 1.48923 1.07568 1.45410 1.32280 1.22336 0.94492 0.95996 0.88651 1.22727 0.96630 0.99391 0.96326 1.23036 0.94757 0.97572 0.95997 0.84327 1.21348 0.90960 0.87485 0.99109 1.44363 1.09509 1.07109 1.73718 1.19373 1.02695 0.85116 1.29808 0.89870 1.25556 0.97443 1.01722 1.00712 1.70126 1.11077 1.35594 1.42225 0.85238 0.77808 0.80104 0.77089 1.22012 1.22379 1.18904 1.21053 0.88234 0.88589 0.95993 1.23224 0.87433 0.90632 0.97899 0.86894 1.20398 0.92672 0.97926 1.07862 0.86732 0.91749 0.90965 0.82569 0.82511 0.85419 0.90731 0.90625 0.90353 0.92599 0.88600 0.93616 0.86214 0.95241 0.93648 0.94720 0.99290 0.95448 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.35 -10.93 10.50 -92.41 -0.97 -11.90 16 3 C 0.11 3.66 6.69 22.51 0.15 3.81 16 4 C -0.21 -5.35 9.04 22.37 0.20 -5.15 16 5 C -0.08 -2.13 10.04 22.26 0.22 -1.91 16 6 C -0.13 -3.85 7.75 22.28 0.17 -3.68 16 7 C -0.04 -1.33 4.55 -19.88 -0.09 -1.42 16 8 C -0.07 -2.58 2.27 -12.28 -0.03 -2.61 16 9 H 0.09 3.67 5.86 -2.39 -0.01 3.66 16 10 C -0.13 -3.33 9.05 71.98 0.65 -2.68 16 11 C 0.54 20.39 6.71 87.66 0.59 20.98 16 12 O -0.57 -24.20 14.88 -3.02 -0.05 -24.25 16 13 N -0.61 -21.01 2.85 -781.26 -2.23 -23.24 16 14 C 0.11 3.08 6.91 86.89 0.60 3.68 16 15 C -0.11 -3.07 6.35 31.87 0.20 -2.86 16 16 C -0.09 -2.65 3.92 -9.23 -0.04 -2.69 16 17 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 18 C 0.14 4.97 6.51 86.53 0.56 5.53 16 19 N -0.62 -30.59 3.37 -698.93 -2.36 -32.94 16 20 C -0.24 -13.28 10.23 84.03 0.86 -12.42 16 21 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 22 C -0.06 -3.46 5.45 84.86 0.46 -2.99 16 23 N -0.94 -56.87 10.40 21.65 0.23 -56.64 16 24 Si 0.97 46.53 29.56 68.60 2.03 48.56 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 27 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.19 8.92 3.58 86.67 0.31 9.23 16 29 C 0.11 3.80 3.39 45.67 0.15 3.95 16 30 H 0.11 3.32 6.44 -2.39 -0.02 3.30 16 31 C -0.17 -6.50 9.61 22.37 0.21 -6.29 16 32 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 34 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 35 H 0.16 2.91 6.30 -2.91 -0.02 2.89 16 36 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.13 3.70 7.11 -2.91 -0.02 3.68 16 38 H 0.07 1.72 7.19 -2.39 -0.02 1.71 16 39 H 0.07 1.77 6.22 -2.39 -0.01 1.76 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.81 8.00 -2.39 -0.02 1.79 16 42 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.04 1.61 7.93 -2.39 -0.02 1.59 16 44 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.05 1.61 7.94 -2.39 -0.02 1.59 16 47 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 48 H -0.01 -0.63 7.44 -2.39 -0.02 -0.65 16 49 H 0.03 1.48 6.55 -2.39 -0.02 1.47 16 50 H 0.10 4.54 7.94 -2.91 -0.02 4.52 16 Total: -1.00 -76.60 388.03 3.90 -72.70 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.94 Total: 23.76 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.31 Total: 3.95 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -4.36 Total: -112.82 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.01 Total: -36.14 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.60 3.90 -72.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076610474.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.123 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds