Wall clock time and date at job start Wed Apr 1 2020 03:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.92288 * 2 1 4 4 C 1.54921 * 111.00271 * 236.09789 * 2 1 3 5 5 N 1.47425 * 104.82877 * 204.91713 * 4 2 1 6 6 C 1.36936 * 125.64660 * 204.09067 * 5 4 2 7 7 H 1.07999 * 120.00230 * 5.83126 * 6 5 4 8 8 C 1.38807 * 120.00140 * 185.82738 * 6 5 4 9 9 N 1.31621 * 120.00240 * 353.63497 * 8 6 5 10 10 Si 1.86805 * 120.00305 * 173.63132 * 8 6 5 11 11 H 1.48505 * 109.47066 * 94.98769 * 10 8 6 12 12 H 1.48493 * 109.47421 * 214.99161 * 10 8 6 13 13 H 1.48504 * 109.46658 * 334.99253 * 10 8 6 14 14 C 1.47018 * 108.70429 * 24.13303 * 5 4 2 15 15 C 1.54320 * 107.27411 * 358.93609 * 14 5 4 16 16 H 1.09007 * 110.72024 * 96.34993 * 15 14 5 17 17 N 1.46494 * 110.72329 * 219.44533 * 15 14 5 18 18 C 1.34779 * 120.00333 * 273.54627 * 17 15 14 19 19 O 1.21289 * 119.99425 * 359.97438 * 18 17 15 20 20 C 1.50692 * 120.00558 * 179.97438 * 18 17 15 21 21 C 1.53000 * 109.47497 * 186.41245 * 20 18 17 22 22 H 1.08999 * 109.40430 * 305.87230 * 21 20 18 23 23 C 1.53077 * 109.43804 * 65.76677 * 21 20 18 24 24 C 1.53400 * 108.28928 * 168.29419 * 23 21 20 25 25 O 1.42824 * 108.39512 * 295.28360 * 24 23 21 26 26 C 1.35850 * 117.87284 * 49.09134 * 25 24 23 27 27 C 1.39146 * 118.49816 * 162.99905 * 26 25 24 28 28 C 1.37971 * 120.21337 * 179.77341 * 27 26 25 29 29 C 1.38297 * 119.95940 * 0.02802 * 28 27 26 30 30 C 1.38100 * 119.98067 * 0.05569 * 29 28 27 31 31 C 1.38367 * 121.80648 * 342.93850 * 26 25 24 32 32 H 1.08997 * 109.47396 * 296.09825 * 1 2 3 33 33 H 1.09007 * 109.46582 * 56.09879 * 1 2 3 34 34 H 1.08996 * 109.47375 * 176.09216 * 1 2 3 35 35 H 1.09003 * 110.36034 * 86.08292 * 4 2 1 36 36 H 1.08994 * 110.46160 * 323.80553 * 4 2 1 37 37 H 0.96997 * 120.00448 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.88408 * 239.51786 * 14 5 4 39 39 H 1.08999 * 110.01247 * 118.42979 * 14 5 4 40 40 H 0.96999 * 120.00380 * 93.54667 * 17 15 14 41 41 H 1.08999 * 109.47355 * 66.40961 * 20 18 17 42 42 H 1.09003 * 109.47018 * 306.40897 * 20 18 17 43 43 H 1.08996 * 109.70524 * 288.00048 * 23 21 20 44 44 H 1.09001 * 109.70026 * 48.56678 * 23 21 20 45 45 H 1.09001 * 109.68093 * 175.55341 * 24 23 21 46 46 H 1.08999 * 109.67547 * 55.00681 * 24 23 21 47 47 H 1.07997 * 119.89206 * 359.78976 * 27 26 25 48 48 H 1.07997 * 120.01936 * 180.02562 * 28 27 26 49 49 H 1.08003 * 120.00735 * 180.02562 * 29 28 27 50 50 H 1.07997 * 119.84471 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5668 -1.6072 7 1 4.3651 -1.4228 -2.6730 8 6 5.6422 -2.0800 -1.0827 9 7 5.8115 -2.1387 0.2213 10 14 6.9877 -2.6873 -2.2274 11 1 7.9757 -1.6012 -2.4501 12 1 7.6676 -3.8571 -1.6155 13 1 6.3894 -3.0863 -3.5267 14 6 3.4673 -1.2743 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4477 -1.6634 1.4239 17 7 2.2286 0.0494 2.3814 18 6 2.3021 -0.5007 3.6097 19 8 2.2498 -1.7056 3.7386 20 6 2.4492 0.3812 4.8227 21 6 2.6688 -0.4886 6.0621 22 1 1.8657 -1.2217 6.1369 23 6 4.0115 -1.2143 5.9438 24 6 4.3434 -1.8376 7.3056 25 8 4.5312 -0.7829 8.2503 26 6 3.5858 0.1907 8.3115 27 6 3.5499 1.0116 9.4345 28 6 2.6075 2.0146 9.5315 29 6 1.6946 2.2056 8.5103 30 6 1.7263 1.3917 7.3951 31 6 2.6693 0.3824 7.2928 32 1 -0.3634 0.4521 0.9228 33 1 -0.3633 0.5732 -0.8530 34 1 -0.3634 -1.0252 -0.0700 35 1 2.1560 -0.1719 -2.0837 36 1 1.4524 -1.6704 -1.4044 37 1 6.6347 -2.4977 0.5878 38 1 4.2426 -0.5999 1.0600 39 1 3.6661 -2.2885 1.0422 40 1 2.2700 1.0130 2.2784 41 1 1.5448 0.9757 4.9517 42 1 3.3038 1.0444 4.6883 43 1 3.9409 -1.9971 5.1888 44 1 4.7897 -0.5039 5.6649 45 1 5.2570 -2.4268 7.2268 46 1 3.5207 -2.4762 7.6273 47 1 4.2622 0.8632 10.2326 48 1 2.5828 2.6501 10.4043 49 1 0.9569 2.9909 8.5853 50 1 1.0126 1.5431 6.5988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080260231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:30 Heat of formation + Delta-G solvation = -32.404703 kcal Electronic energy + Delta-G solvation = -30496.928708 eV Core-core repulsion = 26489.414145 eV Total energy + Delta-G solvation = -4007.514564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.97896 -39.50718 -37.63309 -37.58885 -35.13489 -33.88116 -32.63409 -30.78368 -30.40355 -30.38929 -29.47491 -27.49480 -25.65114 -24.58424 -23.82728 -23.36460 -22.26650 -20.64199 -20.05785 -19.81112 -19.39485 -17.99818 -17.09127 -16.90191 -16.54724 -15.91442 -15.74974 -15.37913 -14.95324 -14.81628 -14.30536 -14.25426 -13.87790 -13.64313 -13.47666 -13.36078 -13.19549 -12.94865 -12.80916 -12.61892 -12.54580 -12.12389 -11.87883 -11.71289 -11.60450 -11.39416 -11.35584 -11.05467 -10.93774 -10.78346 -10.75420 -10.60846 -10.39555 -10.36864 -9.98047 -9.94055 -9.74111 -9.44590 -8.93125 -8.59104 -8.47396 -8.26457 -6.83379 -5.70872 -3.04991 1.15197 1.28643 2.96578 3.21989 3.39797 3.45398 3.47750 3.48691 3.63722 4.47060 4.49838 4.51334 4.67509 4.73766 4.91644 5.00051 5.10560 5.10862 5.17658 5.23073 5.27729 5.30554 5.36598 5.40391 5.42109 5.52932 5.63290 5.71464 5.75972 5.76495 5.84516 5.97263 5.97687 6.10277 6.13079 6.16127 6.18409 6.22690 6.33777 6.33794 6.39063 6.48350 6.61505 6.64903 6.78765 6.92865 7.36133 7.55456 7.59327 7.84003 7.92118 8.25304 8.59532 9.21127 9.82036 10.47329 11.40056 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002738 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.728265 B =10224.545093 C =11818.532191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.916 5.916 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.174 3.826 15 C 0.121 3.879 16 H 0.086 0.914 17 N -0.714 5.714 18 C 0.512 3.488 19 O -0.537 6.537 20 C -0.133 4.133 21 C -0.027 4.027 22 H 0.094 0.906 23 C -0.159 4.159 24 C 0.063 3.937 25 O -0.319 6.319 26 C 0.138 3.862 27 C -0.153 4.153 28 C -0.091 4.091 29 C -0.156 4.156 30 C -0.085 4.085 31 C -0.152 4.152 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.022 0.978 37 H 0.252 0.748 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.395 0.605 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.064 0.936 47 H 0.128 0.872 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 9.276 16.072 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.563 5.563 10 Si 0.740 3.260 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.048 3.952 15 C 0.016 3.984 16 H 0.104 0.896 17 N -0.364 5.364 18 C 0.298 3.702 19 O -0.414 6.414 20 C -0.173 4.173 21 C -0.046 4.046 22 H 0.112 0.888 23 C -0.196 4.196 24 C -0.012 4.012 25 O -0.233 6.233 26 C 0.092 3.908 27 C -0.171 4.171 28 C -0.109 4.109 29 C -0.174 4.174 30 C -0.103 4.103 31 C -0.153 4.153 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.228 0.772 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.127 0.873 46 H 0.083 0.917 47 H 0.146 0.854 48 H 0.143 0.857 49 H 0.140 0.860 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.712 8.265 16.275 20.676 hybrid contribution 0.732 0.177 -0.843 1.131 sum -8.980 8.441 15.432 19.750 Atomic orbital electron populations 1.21695 0.95067 1.01781 1.00926 1.22612 0.94793 0.99480 0.96503 0.90509 1.21584 0.87684 0.95042 0.94272 1.44409 1.07619 1.79460 1.01812 1.19034 0.91823 1.35752 0.89374 0.90374 1.24840 0.98234 1.01228 0.95998 1.69982 1.26195 1.50715 1.09413 0.86143 0.81824 0.78345 0.79705 1.21718 1.21619 1.20619 1.21463 0.90002 1.00408 0.83297 1.22473 1.00218 0.92693 0.82997 0.89629 1.45957 1.74214 1.10080 1.06129 1.20449 0.76262 0.89088 0.84404 1.90686 1.49544 1.14973 1.86224 1.21772 1.04242 0.98672 0.92578 1.19742 0.99304 0.95644 0.89875 0.88830 1.22387 0.96720 1.02302 0.98201 1.23030 1.03083 0.87503 0.87558 1.85975 1.44451 1.33876 1.59008 1.18735 0.88899 0.89864 0.93289 1.20597 1.01697 0.97866 0.96985 1.20902 0.94466 0.96812 0.98713 1.21001 1.00609 1.01021 0.94760 1.20963 0.97334 0.94146 0.97892 1.19886 0.98691 1.00300 0.96391 0.93149 0.92804 0.92602 0.94088 0.96020 0.93767 0.93653 0.93161 0.77156 0.88721 0.88826 0.87609 0.90654 0.87300 0.91726 0.85427 0.85663 0.86021 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.31 37.16 0.35 -1.42 16 2 C -0.11 -1.85 3.25 -88.46 -0.29 -2.14 16 3 H 0.08 1.19 8.00 -51.93 -0.42 0.78 16 4 C 0.14 2.84 6.70 -2.52 -0.02 2.82 16 5 N -0.61 -15.46 3.39 -170.07 -0.58 -16.04 16 6 C -0.23 -6.48 10.27 -15.06 -0.15 -6.63 16 7 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 8 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 9 N -0.92 -27.26 10.36 55.49 0.57 -26.68 16 10 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.17 4.26 5.13 -3.07 -0.02 4.25 16 15 C 0.12 2.25 2.70 -66.10 -0.18 2.07 16 16 H 0.09 1.70 7.60 -51.93 -0.39 1.31 16 17 N -0.71 -10.82 5.13 -52.03 -0.27 -11.09 16 18 C 0.51 7.91 7.50 -10.99 -0.08 7.82 16 19 O -0.54 -10.34 14.03 5.55 0.08 -10.27 16 20 C -0.13 -1.52 4.85 -27.89 -0.14 -1.65 16 21 C -0.03 -0.33 2.02 -91.70 -0.18 -0.52 16 22 H 0.09 1.22 7.83 -51.93 -0.41 0.81 16 23 C -0.16 -2.10 5.08 -26.48 -0.13 -2.23 16 24 C 0.06 0.73 7.03 37.36 0.26 1.00 16 25 O -0.32 -4.13 10.27 -19.27 -0.20 -4.33 16 26 C 0.14 1.70 6.47 -39.20 -0.25 1.44 16 27 C -0.15 -1.62 9.94 -39.34 -0.39 -2.01 16 28 C -0.09 -0.81 10.04 -39.66 -0.40 -1.21 16 29 C -0.16 -1.38 10.04 -39.61 -0.40 -1.78 16 30 C -0.09 -0.84 9.08 -39.53 -0.36 -1.20 16 31 C -0.15 -1.76 5.43 -104.44 -0.57 -2.33 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.02 0.44 7.99 -51.93 -0.41 0.03 16 37 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.05 1.22 7.43 -51.93 -0.39 0.84 16 39 H 0.05 1.44 7.37 -51.93 -0.38 1.06 16 40 H 0.39 4.83 8.52 -40.82 -0.35 4.48 16 41 H 0.09 0.84 6.25 -51.93 -0.32 0.51 16 42 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 43 H 0.11 1.64 6.57 -51.93 -0.34 1.30 16 44 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 45 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 48 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 50 H 0.13 1.00 6.37 -52.49 -0.33 0.66 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -33.32 393.57 -10.46 -43.78 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.93 Total: 5.46 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.04 Total: -3.99 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.27 Total: -53.81 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.12 Total: -14.60 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.32 -10.46 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080260231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.373 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds