Wall clock time and date at job start Wed Apr 1 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.92288 * 2 1 4 4 C 1.54921 * 111.00271 * 236.09789 * 2 1 3 5 5 N 1.47425 * 104.82877 * 204.91713 * 4 2 1 6 6 C 1.36936 * 125.64660 * 204.09067 * 5 4 2 7 7 H 1.07999 * 120.00230 * 5.83126 * 6 5 4 8 8 C 1.38807 * 120.00140 * 185.82738 * 6 5 4 9 9 N 1.31621 * 120.00240 * 353.63497 * 8 6 5 10 10 Si 1.86805 * 120.00305 * 173.63132 * 8 6 5 11 11 H 1.48505 * 109.47066 * 94.98769 * 10 8 6 12 12 H 1.48493 * 109.47421 * 214.99161 * 10 8 6 13 13 H 1.48504 * 109.46658 * 334.99253 * 10 8 6 14 14 C 1.47018 * 108.70429 * 24.13303 * 5 4 2 15 15 C 1.54320 * 107.27411 * 358.93609 * 14 5 4 16 16 H 1.09007 * 110.72024 * 96.34993 * 15 14 5 17 17 N 1.46494 * 110.72329 * 219.44533 * 15 14 5 18 18 C 1.34779 * 120.00333 * 273.54627 * 17 15 14 19 19 O 1.21289 * 119.99425 * 359.97438 * 18 17 15 20 20 C 1.50692 * 120.00558 * 179.97438 * 18 17 15 21 21 C 1.53000 * 109.47497 * 186.41245 * 20 18 17 22 22 H 1.08999 * 109.40430 * 305.87230 * 21 20 18 23 23 C 1.53077 * 109.43804 * 65.76677 * 21 20 18 24 24 C 1.53400 * 108.28928 * 168.29419 * 23 21 20 25 25 O 1.42824 * 108.39512 * 295.28360 * 24 23 21 26 26 C 1.35850 * 117.87284 * 49.09134 * 25 24 23 27 27 C 1.39146 * 118.49816 * 162.99905 * 26 25 24 28 28 C 1.37971 * 120.21337 * 179.77341 * 27 26 25 29 29 C 1.38297 * 119.95940 * 0.02802 * 28 27 26 30 30 C 1.38100 * 119.98067 * 0.05569 * 29 28 27 31 31 C 1.38367 * 121.80648 * 342.93850 * 26 25 24 32 32 H 1.08997 * 109.47396 * 296.09825 * 1 2 3 33 33 H 1.09007 * 109.46582 * 56.09879 * 1 2 3 34 34 H 1.08996 * 109.47375 * 176.09216 * 1 2 3 35 35 H 1.09003 * 110.36034 * 86.08292 * 4 2 1 36 36 H 1.08994 * 110.46160 * 323.80553 * 4 2 1 37 37 H 0.96997 * 120.00448 * 179.97438 * 9 8 6 38 38 H 1.09004 * 109.88408 * 239.51786 * 14 5 4 39 39 H 1.08999 * 110.01247 * 118.42979 * 14 5 4 40 40 H 0.96999 * 120.00380 * 93.54667 * 17 15 14 41 41 H 1.08999 * 109.47355 * 66.40961 * 20 18 17 42 42 H 1.09003 * 109.47018 * 306.40897 * 20 18 17 43 43 H 1.08996 * 109.70524 * 288.00048 * 23 21 20 44 44 H 1.09001 * 109.70026 * 48.56678 * 23 21 20 45 45 H 1.09001 * 109.68093 * 175.55341 * 24 23 21 46 46 H 1.08999 * 109.67547 * 55.00681 * 24 23 21 47 47 H 1.07997 * 119.89206 * 359.78976 * 27 26 25 48 48 H 1.07997 * 120.01936 * 180.02562 * 28 27 26 49 49 H 1.08003 * 120.00735 * 180.02562 * 29 28 27 50 50 H 1.07997 * 119.84471 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5668 -1.6072 7 1 4.3651 -1.4228 -2.6730 8 6 5.6422 -2.0800 -1.0827 9 7 5.8115 -2.1387 0.2213 10 14 6.9877 -2.6873 -2.2274 11 1 7.9757 -1.6012 -2.4501 12 1 7.6676 -3.8571 -1.6155 13 1 6.3894 -3.0863 -3.5267 14 6 3.4673 -1.2743 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4477 -1.6634 1.4239 17 7 2.2286 0.0494 2.3814 18 6 2.3021 -0.5007 3.6097 19 8 2.2498 -1.7056 3.7386 20 6 2.4492 0.3812 4.8227 21 6 2.6688 -0.4886 6.0621 22 1 1.8657 -1.2217 6.1369 23 6 4.0115 -1.2143 5.9438 24 6 4.3434 -1.8376 7.3056 25 8 4.5312 -0.7829 8.2503 26 6 3.5858 0.1907 8.3115 27 6 3.5499 1.0116 9.4345 28 6 2.6075 2.0146 9.5315 29 6 1.6946 2.2056 8.5103 30 6 1.7263 1.3917 7.3951 31 6 2.6693 0.3824 7.2928 32 1 -0.3634 0.4521 0.9228 33 1 -0.3633 0.5732 -0.8530 34 1 -0.3634 -1.0252 -0.0700 35 1 2.1560 -0.1719 -2.0837 36 1 1.4524 -1.6704 -1.4044 37 1 6.6347 -2.4977 0.5878 38 1 4.2426 -0.5999 1.0600 39 1 3.6661 -2.2885 1.0422 40 1 2.2700 1.0130 2.2784 41 1 1.5448 0.9757 4.9517 42 1 3.3038 1.0444 4.6883 43 1 3.9409 -1.9971 5.1888 44 1 4.7897 -0.5039 5.6649 45 1 5.2570 -2.4268 7.2268 46 1 3.5207 -2.4762 7.6273 47 1 4.2622 0.8632 10.2326 48 1 2.5828 2.6501 10.4043 49 1 0.9569 2.9909 8.5853 50 1 1.0126 1.5431 6.5988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080260231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:29 Heat of formation + Delta-G solvation = -53.283752 kcal Electronic energy + Delta-G solvation = -30497.834092 eV Core-core repulsion = 26489.414145 eV Total energy + Delta-G solvation = -4008.419947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90372 -40.82725 -39.18377 -38.40171 -36.18689 -35.55245 -34.26207 -32.18600 -31.66585 -31.18835 -30.59255 -29.06951 -27.36163 -25.76657 -25.02566 -24.50397 -23.22141 -22.19765 -21.52038 -20.97794 -20.61574 -18.91560 -18.85712 -18.14260 -17.50645 -17.34359 -16.94015 -16.74745 -16.33092 -15.79194 -15.68404 -15.48596 -15.14858 -14.80030 -14.73526 -14.52752 -14.37188 -14.17754 -14.03233 -13.85684 -13.70864 -13.46434 -13.33889 -13.05908 -12.92080 -12.72167 -12.59263 -12.52751 -12.27074 -12.21645 -12.00498 -11.93696 -11.85969 -11.68269 -11.62469 -11.46528 -11.27412 -10.76261 -10.73285 -9.95365 -9.70926 -9.08814 -8.93128 -7.87440 -5.24039 0.39540 0.51598 1.42279 1.44896 1.54157 1.70922 2.22845 2.36139 2.47943 2.85009 3.30913 3.48125 3.59162 3.63701 3.71079 3.77389 3.86328 4.06118 4.06685 4.11987 4.16201 4.27102 4.29592 4.33784 4.46463 4.51028 4.53252 4.61939 4.63244 4.72833 4.73930 4.81894 4.83016 4.87893 5.06668 5.08172 5.08474 5.11642 5.16522 5.26567 5.30474 5.41476 5.45908 5.50340 5.57178 5.64349 5.64980 5.79593 5.92879 6.15464 6.48913 6.65874 7.05242 7.37005 7.74604 8.38567 9.21810 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002738 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.728265 B =10224.545093 C =11818.532191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 H 0.092 0.908 4 C 0.131 3.869 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.977 3.023 11 H -0.284 1.284 12 H -0.298 1.298 13 H -0.265 1.265 14 C 0.189 3.811 15 C 0.138 3.862 16 H 0.071 0.929 17 N -0.704 5.704 18 C 0.508 3.492 19 O -0.581 6.581 20 C -0.120 4.120 21 C -0.022 4.022 22 H 0.082 0.918 23 C -0.157 4.157 24 C 0.065 3.935 25 O -0.333 6.333 26 C 0.106 3.894 27 C -0.165 4.165 28 C -0.088 4.088 29 C -0.152 4.152 30 C -0.089 4.089 31 C -0.164 4.164 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.024 0.976 37 H 0.244 0.756 38 H 0.011 0.989 39 H -0.008 1.008 40 H 0.414 0.586 41 H 0.133 0.867 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.134 0.866 48 H 0.154 0.846 49 H 0.152 0.848 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 12.310 16.293 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 H 0.110 0.890 4 C 0.006 3.994 5 N -0.356 5.356 6 C -0.372 4.372 7 H 0.105 0.895 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.805 3.195 11 H -0.211 1.211 12 H -0.225 1.225 13 H -0.190 1.190 14 C 0.063 3.937 15 C 0.032 3.968 16 H 0.089 0.911 17 N -0.355 5.355 18 C 0.296 3.704 19 O -0.460 6.460 20 C -0.159 4.159 21 C -0.041 4.041 22 H 0.100 0.900 23 C -0.194 4.194 24 C -0.009 4.009 25 O -0.247 6.247 26 C 0.062 3.938 27 C -0.183 4.183 28 C -0.105 4.105 29 C -0.170 4.170 30 C -0.106 4.106 31 C -0.165 4.165 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.029 0.971 39 H 0.010 0.990 40 H 0.250 0.750 41 H 0.151 0.849 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.087 0.913 47 H 0.152 0.848 48 H 0.172 0.828 49 H 0.170 0.830 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.028 11.353 16.476 23.346 hybrid contribution 1.413 -0.758 -0.893 1.835 sum -10.614 10.596 15.583 21.628 Atomic orbital electron populations 1.21649 0.91608 1.02196 1.03136 1.22531 0.97347 0.98844 0.92574 0.88961 1.21872 0.85255 0.95787 0.96507 1.44740 1.09264 1.79461 1.02090 1.19487 0.92545 1.34882 0.90242 0.89488 1.25732 1.00918 1.02078 0.97442 1.70242 1.26317 1.51910 1.11281 0.85081 0.78876 0.77331 0.78183 1.21123 1.22470 1.18988 1.21099 0.92780 0.96494 0.83347 1.21995 0.96137 0.93566 0.85139 0.91067 1.45799 1.73925 1.10703 1.05120 1.21233 0.74818 0.89005 0.85379 1.90680 1.51245 1.17243 1.86860 1.21769 1.06428 0.97897 0.89819 1.19632 0.97802 0.95691 0.90953 0.90005 1.22278 0.97560 1.01361 0.98227 1.23023 1.03758 0.87509 0.86653 1.85944 1.45320 1.34357 1.59123 1.19103 0.89622 0.90526 0.94583 1.20854 1.02554 0.98213 0.96710 1.21297 0.93408 0.96135 0.99706 1.21402 1.00651 1.01002 0.93900 1.21246 0.96957 0.93407 0.99020 1.19854 0.99694 1.01132 0.95798 0.91019 0.90456 0.93186 0.92809 0.95804 0.94724 0.97060 0.99020 0.74966 0.84876 0.87836 0.90689 0.91730 0.86414 0.91256 0.84804 0.82804 0.83043 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.31 71.98 0.67 -2.16 16 2 C -0.09 -2.84 3.25 -9.40 -0.03 -2.87 16 3 H 0.09 2.57 8.00 -2.39 -0.02 2.55 16 4 C 0.13 5.16 6.70 86.86 0.58 5.74 16 5 N -0.63 -32.90 3.39 -691.99 -2.35 -35.24 16 6 C -0.24 -13.84 10.27 84.03 0.86 -12.98 16 7 H 0.09 4.67 7.84 -2.91 -0.02 4.65 16 8 C -0.07 -4.04 5.48 84.86 0.47 -3.57 16 9 N -0.95 -59.63 10.36 21.65 0.22 -59.41 16 10 Si 0.98 46.95 29.56 68.60 2.03 48.98 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 C 0.19 9.78 5.13 86.73 0.44 10.23 16 15 C 0.14 5.17 2.70 46.18 0.12 5.29 16 16 H 0.07 2.91 7.60 -2.38 -0.02 2.89 16 17 N -0.70 -20.93 5.13 -436.92 -2.24 -23.17 16 18 C 0.51 15.80 7.50 87.65 0.66 16.46 16 19 O -0.58 -23.58 14.03 -3.06 -0.04 -23.62 16 20 C -0.12 -2.59 4.85 29.85 0.14 -2.44 16 21 C -0.02 -0.54 2.02 -11.49 -0.02 -0.57 16 22 H 0.08 2.19 7.83 -2.39 -0.02 2.17 16 23 C -0.16 -4.47 5.08 30.75 0.16 -4.32 16 24 C 0.07 1.63 7.03 72.12 0.51 2.14 16 25 O -0.33 -8.93 10.27 -91.86 -0.94 -9.87 16 26 C 0.11 2.60 6.47 22.52 0.15 2.75 16 27 C -0.16 -3.29 9.94 22.42 0.22 -3.06 16 28 C -0.09 -1.30 10.04 22.22 0.22 -1.08 16 29 C -0.15 -2.11 10.04 22.25 0.22 -1.89 16 30 C -0.09 -1.47 9.08 22.30 0.20 -1.27 16 31 C -0.16 -3.64 5.43 -19.75 -0.11 -3.75 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.05 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.02 0.95 7.99 -2.39 -0.02 0.93 16 37 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.01 0.64 7.43 -2.38 -0.02 0.63 16 39 H -0.01 -0.53 7.37 -2.39 -0.02 -0.55 16 40 H 0.41 9.20 8.52 -92.71 -0.79 8.41 16 41 H 0.13 1.87 6.25 -2.39 -0.01 1.85 16 42 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 43 H 0.07 2.60 6.57 -2.39 -0.02 2.58 16 44 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 45 H 0.12 2.61 8.14 -2.39 -0.02 2.60 16 46 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 48 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 49 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 50 H 0.15 1.71 6.37 -2.91 -0.02 1.69 16 Total: -1.00 -78.78 393.57 2.30 -76.48 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.15 Total: 23.21 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.47 Total: 2.65 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -4.37 Total: -117.82 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.99 Total: -33.49 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -78.78 2.30 -76.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080260231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.193 kcal (2) G-P(sol) polarization free energy of solvation -78.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds