Wall clock time and date at job start Wed Apr 1 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 116.99525 * 2 1 4 4 C 1.38646 * 119.95409 * 359.97438 * 3 2 1 5 5 C 1.38115 * 119.87067 * 179.97438 * 4 3 2 6 6 C 1.38175 * 120.00014 * 359.97438 * 5 4 3 7 7 C 1.38499 * 120.33192 * 0.02562 * 6 5 4 8 8 C 1.38171 * 119.87993 * 359.97438 * 7 6 5 9 9 C 1.51361 * 109.77368 * 179.97438 * 8 7 6 10 10 H 1.09001 * 110.30726 * 101.83618 * 9 8 7 11 11 C 1.50706 * 110.30467 * 223.89150 * 9 8 7 12 12 O 1.21283 * 119.99503 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00081 * 179.72828 * 11 9 8 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 9 15 15 H 1.09004 * 110.88510 * 34.28969 * 14 13 11 16 16 C 1.54908 * 110.99923 * 270.41578 * 14 13 11 17 17 N 1.47474 * 104.80937 * 204.94594 * 16 14 13 18 18 C 1.36937 * 125.63074 * 204.07164 * 17 16 14 19 19 H 1.07998 * 119.99855 * 180.02562 * 18 17 16 20 20 C 1.38816 * 119.99987 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99736 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99985 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46794 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47015 * 120.00090 * 22 20 18 25 25 H 1.48501 * 109.46829 * 240.00257 * 22 20 18 26 26 C 1.47019 * 108.71972 * 24.07088 * 17 16 14 27 27 C 1.54324 * 107.27274 * 358.97587 * 26 17 16 28 28 H 1.09003 * 110.87471 * 96.24318 * 27 26 17 29 29 C 1.53000 * 110.71968 * 219.44259 * 27 26 17 30 30 C 1.54346 * 105.16760 * 342.81568 * 9 8 7 31 31 C 1.51381 * 130.36256 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46581 * 299.99501 * 1 2 3 33 33 H 1.08996 * 109.47298 * 60.00094 * 1 2 3 34 34 H 1.09000 * 109.46773 * 180.02562 * 1 2 3 35 35 H 1.07996 * 120.06012 * 359.97438 * 4 3 2 36 36 H 1.08002 * 120.00125 * 180.02562 * 5 4 3 37 37 H 1.07999 * 119.83542 * 180.02562 * 6 5 4 38 38 H 0.96998 * 120.00525 * 359.97438 * 13 11 9 39 39 H 1.08994 * 110.36861 * 323.75407 * 16 14 13 40 40 H 1.09001 * 110.37005 * 86.07733 * 16 14 13 41 41 H 0.97000 * 119.99362 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.88465 * 239.55719 * 26 17 16 43 43 H 1.09001 * 110.01292 * 118.46105 * 26 17 16 44 44 H 1.08995 * 109.47130 * 173.52363 * 29 27 26 45 45 H 1.09001 * 109.47246 * 293.52096 * 29 27 26 46 46 H 1.09003 * 109.47192 * 53.52139 * 29 27 26 47 47 H 1.08995 * 110.82463 * 144.56689 * 30 9 8 48 48 H 1.09003 * 110.82113 * 268.11598 * 30 9 8 49 49 H 1.08999 * 110.30242 * 316.10906 * 31 7 6 50 50 H 1.08998 * 110.29849 * 78.26295 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3731 -0.0005 5 6 1.9185 3.6028 0.0000 6 6 3.2984 3.6732 0.0016 7 6 4.0579 2.5150 0.0021 8 6 3.4335 1.2824 0.0016 9 6 4.4727 0.1820 0.0017 10 1 4.5796 -0.2373 1.0022 11 6 4.0915 -0.8974 -0.9786 12 8 3.0712 -0.7954 -1.6262 13 7 4.8875 -1.9729 -1.1399 14 6 4.5173 -3.0218 -2.0933 15 1 4.0097 -2.5978 -2.9598 16 6 3.6442 -4.1063 -1.4141 17 7 3.8571 -5.3218 -2.2216 18 6 2.9914 -6.3786 -2.3160 19 1 3.2402 -7.2266 -2.9367 20 6 1.7941 -6.3598 -1.6138 21 7 1.4907 -5.3261 -0.8577 22 14 0.6134 -7.8017 -1.7420 23 1 1.1845 -8.8299 -2.6488 24 1 0.4041 -8.3914 -0.3953 25 1 -0.6865 -7.3304 -2.2836 26 6 5.1524 -5.2113 -2.9082 27 6 5.7595 -3.8454 -2.5242 28 1 6.4591 -3.9507 -1.6949 29 6 6.4455 -3.1998 -3.7297 30 6 5.7849 0.8656 -0.4377 31 6 5.5601 2.3277 0.0033 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 0.2113 2.3167 -0.0014 36 1 1.3315 4.5094 0.0000 37 1 3.7873 4.6362 0.0024 38 1 5.7060 -2.0521 -0.6254 39 1 3.9732 -4.2704 -0.3880 40 1 2.5939 -3.8156 -1.4347 41 1 0.6542 -5.3132 -0.3668 42 1 5.0055 -5.2614 -3.9871 43 1 5.8149 -6.0149 -2.5867 44 1 6.7653 -2.1910 -3.4686 45 1 7.3139 -3.7937 -4.0149 46 1 5.7462 -3.1546 -4.5646 47 1 6.6401 0.4319 0.0804 48 1 5.9120 0.8016 -1.5184 49 1 6.0271 3.0119 -0.7050 50 1 5.9602 2.4872 1.0045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080574156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:52 Heat of formation + Delta-G solvation = -19.109383 kcal Electronic energy + Delta-G solvation = -31363.129407 eV Core-core repulsion = 27356.191371 eV Total energy + Delta-G solvation = -4006.938036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.77372 -39.09799 -38.01285 -37.22038 -35.16789 -33.75191 -32.51330 -30.72042 -30.30326 -29.38109 -28.16932 -27.00303 -26.84696 -25.55216 -23.61686 -22.45883 -21.90016 -20.81610 -20.20008 -19.92843 -19.23666 -17.47438 -16.95296 -16.78531 -16.23170 -15.77325 -15.39545 -15.30103 -14.87995 -14.66697 -14.18435 -14.14550 -13.83943 -13.68685 -13.29314 -12.93297 -12.77138 -12.66900 -12.59575 -12.43562 -12.16443 -11.88892 -11.79487 -11.71557 -11.59144 -11.28006 -11.17267 -11.10214 -11.03008 -10.77247 -10.75962 -10.72069 -10.51535 -10.26758 -9.90593 -9.71542 -9.65526 -9.18367 -8.59595 -8.57068 -8.26202 -7.94311 -6.76998 -5.56887 -3.00813 1.31339 1.55747 3.22817 3.43347 3.48255 3.51173 3.61742 3.62004 3.87287 4.32694 4.44433 4.54152 4.87916 4.91940 4.96544 5.10057 5.18121 5.23831 5.31572 5.37080 5.41934 5.45794 5.51162 5.51727 5.56272 5.59190 5.61060 5.72441 5.83053 5.84097 5.85556 5.99526 6.03171 6.05288 6.11994 6.22452 6.33716 6.41160 6.44371 6.44494 6.55378 6.58460 6.72414 6.85727 6.92971 7.08731 7.58178 7.68589 7.69200 7.96406 8.11624 8.46217 8.86368 9.27805 9.89096 10.52906 11.45180 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003572 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.205942 B = 7836.578515 C = 9771.456513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.282 6.282 3 C 0.177 3.823 4 C -0.223 4.223 5 C -0.076 4.076 6 C -0.159 4.159 7 C -0.057 4.057 8 C -0.116 4.116 9 C -0.061 4.061 10 H 0.105 0.895 11 C 0.516 3.484 12 O -0.510 6.510 13 N -0.718 5.718 14 C 0.124 3.876 15 H 0.088 0.912 16 C 0.150 3.850 17 N -0.604 5.604 18 C -0.225 4.225 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.142 3.858 27 C -0.112 4.112 28 H 0.072 0.928 29 C -0.136 4.136 30 C -0.110 4.110 31 C -0.079 4.079 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.391 0.609 39 H 0.011 0.989 40 H 0.112 0.888 41 H 0.251 0.749 42 H 0.026 0.974 43 H 0.022 0.978 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 18.297 3.327 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.193 6.193 3 C 0.130 3.870 4 C -0.241 4.241 5 C -0.095 4.095 6 C -0.177 4.177 7 C -0.058 4.058 8 C -0.117 4.117 9 C -0.082 4.082 10 H 0.123 0.877 11 C 0.301 3.699 12 O -0.383 6.383 13 N -0.369 5.369 14 C 0.018 3.982 15 H 0.106 0.894 16 C 0.024 3.976 17 N -0.330 5.330 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.563 5.563 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.015 3.985 27 C -0.131 4.131 28 H 0.091 0.909 29 C -0.194 4.194 30 C -0.148 4.148 31 C -0.115 4.115 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.224 0.776 39 H 0.029 0.971 40 H 0.129 0.871 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.141 18.070 2.907 19.646 hybrid contribution -0.568 -0.727 0.329 0.980 sum 6.573 17.343 3.236 18.827 Atomic orbital electron populations 1.23035 0.79061 1.04317 1.00155 1.86380 1.20582 1.25478 1.86836 1.18639 0.90808 0.84888 0.92682 1.21137 0.99973 0.92232 1.10801 1.20759 0.94206 0.96838 0.97652 1.20371 0.93373 0.97103 1.06881 1.20331 0.95530 0.92343 0.97559 1.19253 0.90407 0.94606 1.07472 1.20723 0.94019 0.93401 1.00064 0.87683 1.20164 0.83843 0.82218 0.83713 1.90741 1.23845 1.77729 1.46026 1.45830 1.25634 1.21518 1.43873 1.22597 0.95511 0.87698 0.92354 0.89422 1.22219 1.01214 0.82958 0.91161 1.44429 1.16649 1.18799 1.53136 1.19100 0.97197 0.95512 1.23533 0.90409 1.24812 0.98178 0.98133 0.99442 1.69849 1.24091 1.28981 1.33368 0.86031 0.81057 0.81430 0.77177 1.20544 1.21823 1.21761 1.21322 0.88281 0.93062 0.95808 1.22420 0.96424 0.96522 0.97756 0.90931 1.21732 1.00060 0.99689 0.97897 1.22316 0.95726 0.94546 1.02195 1.21045 0.91401 0.96919 1.02185 0.93484 0.93035 0.87954 0.85444 0.85961 0.86392 0.77626 0.97090 0.87058 0.93858 0.95635 0.96042 0.93129 0.93004 0.92582 0.89729 0.90343 0.90335 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.42 16 2 O -0.28 -5.14 8.10 -42.12 -0.34 -5.48 16 3 C 0.18 2.86 6.16 -39.17 -0.24 2.62 16 4 C -0.22 -2.98 9.03 -39.48 -0.36 -3.33 16 5 C -0.08 -0.87 10.04 -39.65 -0.40 -1.27 16 6 C -0.16 -1.79 10.04 -39.51 -0.40 -2.18 16 7 C -0.06 -0.71 6.14 -104.22 -0.64 -1.34 16 8 C -0.12 -1.75 5.34 -104.06 -0.56 -2.30 16 9 C -0.06 -0.83 3.24 -91.89 -0.30 -1.13 16 10 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 11 C 0.52 9.12 6.82 -10.98 -0.07 9.04 16 12 O -0.51 -11.29 13.27 -17.13 -0.23 -11.52 16 13 N -0.72 -11.80 5.18 -51.73 -0.27 -12.06 16 14 C 0.12 2.47 2.82 -65.78 -0.19 2.28 16 15 H 0.09 1.96 7.54 -51.93 -0.39 1.57 16 16 C 0.15 3.82 5.58 -2.50 -0.01 3.81 16 17 N -0.60 -15.93 3.40 -170.04 -0.58 -16.51 16 18 C -0.23 -6.44 10.27 -15.06 -0.15 -6.60 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.91 -27.63 10.09 55.49 0.56 -27.07 16 22 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C 0.14 2.99 6.84 -3.07 -0.02 2.97 16 27 C -0.11 -1.92 3.19 -88.79 -0.28 -2.20 16 28 H 0.07 1.13 7.99 -51.93 -0.42 0.72 16 29 C -0.14 -1.91 9.16 37.16 0.34 -1.57 16 30 C -0.11 -1.08 6.55 -25.31 -0.17 -1.25 16 31 C -0.08 -0.71 6.77 -26.84 -0.18 -0.89 16 32 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 33 H 0.05 0.68 7.65 -51.93 -0.40 0.28 16 34 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.13 1.46 6.29 -52.49 -0.33 1.13 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.39 5.09 8.54 -40.82 -0.35 4.74 16 39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.11 3.33 5.88 -51.93 -0.31 3.03 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.03 0.54 7.76 -51.93 -0.40 0.13 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.83 8.06 -51.93 -0.42 0.42 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 394.98 15.07 5.95 5.95 Total: -1.00 -35.31 394.98 -10.67 -45.98 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.01 Total: 5.44 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.73 Total: -2.31 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.29 Total: -55.64 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.57 Total: -17.00 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.31 -10.67 -45.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080574156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.873 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds